genome.fa.s57.2.7.7.80.10.50.1000.76.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167882.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_15, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22478863

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   

This is table  76  of  106  ( 12717 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14545544--14545618	31	2.4	31	76	13	73	45	0	1	53	1.08
14545623--14545661	20	1.9	20	84	5	51	35	0	0	64	0.94
14545642--14545675	16	2.1	17	88	5	52	38	0	0	61	0.96
14555307--14555331	6	4.2	6	100	0	50	16	0	16	68	1.22
14557232--14557270	16	2.4	16	86	4	60	33	20	17	28	1.96
14561326--14561409	34	2.5	34	79	11	93	41	1	2	54	1.21
14563118--14563148	3	10.3	3	92	0	53	70	0	29	0	0.87
14567104--14567162	17	3.4	17	73	17	66	38	8	3	49	1.50
14567091--14567162	36	2.0	36	97	0	135	37	11	4	47	1.59
14567097--14567156	20	3.2	19	72	18	63	41	10	5	43	1.60
14570121--14570183	24	2.6	24	87	5	83	41	3	0	55	1.16
14575686--14575736	23	2.2	23	92	0	84	17	27	17	37	1.93
14575693--14575740	23	2.1	23	100	0	96	14	29	16	39	1.88
14579647--14579673	13	2.1	13	100	0	54	14	14	7	62	1.51
14586178--14586209	13	2.5	13	95	5	57	53	9	0	37	1.34
14597960--14598004	2	22.5	2	95	0	81	46	0	0	53	1.00
14598468--14598492	13	1.9	13	100	0	50	68	0	0	32	0.90
14601351--14601408	12	4.9	12	75	14	50	29	1	0	68	0.99
14601343--14601429	34	2.6	34	80	7	97	36	1	0	62	1.03
14602440--14602470	2	16.0	2	93	6	55	51	0	0	48	1.00
14604240--14604290	19	2.6	21	76	17	56	54	0	1	43	1.11
14606463--14606492	12	2.6	12	94	5	53	56	10	16	16	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14610884--14610944	32	1.9	32	89	0	95	27	11	14	45	1.80
14617289--14617327	14	2.9	13	85	14	53	66	0	0	33	0.92
14617286--14617324	12	3.2	12	89	10	53	69	0	0	30	0.89
14617817--14617873	30	1.9	30	85	0	78	52	1	0	45	1.11
14621059--14621093	2	17.5	2	100	0	70	0	51	0	48	1.00
14622817--14622890	15	4.9	15	77	0	58	20	64	4	10	1.41
14622802--14622890	30	3.0	30	78	3	81	19	65	5	10	1.43
14623053--14623106	21	2.6	21	87	0	72	20	59	7	12	1.58
14627262--14627309	24	2.0	24	84	8	62	62	4	0	33	1.14
14636524--14636566	21	2.1	21	84	16	56	13	4	4	76	1.10
14637778--14637829	21	2.5	21	90	6	79	50	0	0	50	1.00
14637778--14637829	22	2.5	22	93	6	90	50	0	0	50	1.00
14637814--14637856	14	2.9	14	80	12	50	58	0	0	41	0.98
14637814--14637865	16	3.4	15	76	10	52	57	0	0	42	0.98
14639436--14639495	29	2.1	29	81	6	68	51	1	3	43	1.28
14639443--14639501	28	2.1	29	84	9	77	47	1	3	47	1.29
14639773--14640307	284	1.9	283	88	2	806	28	17	23	30	1.97
14658204--14658246	19	2.3	20	84	11	56	44	0	0	55	0.99
14669245--14669291	19	2.6	18	87	9	69	51	4	0	44	1.21
14669834--14669887	27	2.0	28	85	3	74	57	7	1	33	1.37
14670339--14670386	21	2.2	22	85	3	62	39	2	4	54	1.32
14670438--14670500	29	2.3	26	84	10	74	46	3	3	47	1.34
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14670991--14671134	70	2.1	70	84	2	182	28	22	17	31	1.97
14672148--14672333	32	5.9	31	69	19	98	41	0	2	55	1.16
14672272--14672339	5	13.4	5	72	20	52	35	0	1	63	1.04
14672259--14672337	23	3.5	24	77	17	82	36	0	2	60	1.10
14672157--14672302	69	2.1	69	80	12	160	43	0	2	53	1.17
14672720--14672782	28	2.2	29	88	8	94	42	1	1	53	1.19
14673984--14674025	13	3.3	13	90	3	59	26	2	0	71	0.98
14674210--14674368	77	2.0	81	87	8	238	39	8	5	47	1.55
14676104--14676250	79	1.9	77	84	2	195	45	10	6	36	1.66
14678193--14678239	22	2.2	22	84	3	60	44	0	0	55	0.99
14678180--14678243	21	3.0	21	81	6	67	45	0	0	54	0.99
14695187--14695245	11	5.5	11	73	20	54	45	0	0	54	0.99
14695203--14695253	24	2.1	24	82	7	59	52	0	0	47	1.00
14695448--14695508	27	2.3	26	75	10	61	50	6	0	42	1.28
14695488--14695549	21	2.9	21	80	7	72	53	3	0	43	1.17
14695509--14695552	15	2.8	17	80	13	58	52	0	0	47	1.00
14695506--14695546	22	1.9	22	95	5	75	53	0	0	46	1.00
14702392--14702425	12	2.8	12	86	0	50	67	0	0	32	0.91
14704090--14704164	23	3.3	23	80	14	77	57	0	0	42	0.98
14705763--14705808	22	2.0	22	83	4	56	47	0	2	50	1.13
14706684--14706713	15	2.0	15	93	0	51	46	0	3	50	1.18
14708431--14708631	104	1.9	103	87	1	294	19	20	18	41	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14711364--14711389	10	2.6	10	100	0	52	92	0	7	0	0.39
14718247--14718272	2	13.0	2	100	0	52	50	0	0	50	1.00
14723829--14723915	43	2.0	43	95	0	156	39	21	18	20	1.93
14727747--14727804	28	2.1	28	86	0	80	56	1	8	32	1.40
14728796--14728860	28	2.2	29	82	15	89	35	0	0	64	0.94
14728881--14728932	17	3.1	16	78	8	59	44	1	1	51	1.23
14728909--14729033	30	4.2	30	75	12	107	56	3	4	35	1.36
14736504--14736560	20	2.8	21	76	10	55	43	0	3	52	1.18
14736581--14736618	20	1.9	19	89	5	58	60	2	5	31	1.33
14736732--14736757	11	2.4	11	100	0	52	15	0	0	84	0.62
14750005--14750033	1	29.0	1	100	0	58	0	0	0	100	0.00
14767377--14767457	35	2.3	35	79	14	85	45	4	3	45	1.42
14770552--14770619	31	2.2	30	87	5	100	52	4	5	36	1.46
14774918--14774953	18	1.9	19	88	5	56	30	0	0	69	0.89
14775907--14775932	2	13.0	2	100	0	52	50	0	50	0	1.00
14787891--14787915	2	12.5	2	100	0	50	48	0	0	52	1.00
14791005--14791059	26	2.3	23	79	14	65	29	3	0	67	1.08
14797322--14797374	22	2.5	21	81	6	61	49	18	16	15	1.80
14804582--14804615	18	2.0	18	88	11	54	50	0	8	41	1.34
14807319--14807368	18	2.7	20	81	9	61	58	2	0	40	1.10
14807330--14807378	17	2.9	17	77	14	57	63	0	0	36	0.95
14808229--14808295	30	2.2	31	83	8	91	55	0	8	35	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14817387--14817433	2	23.5	2	95	0	85	46	2	0	51	1.13
14825596--14825622	13	2.1	13	100	0	54	55	14	7	22	1.64
14828266--14828295	14	2.1	14	93	0	51	73	3	0	23	0.98
14828045--14828360	160	1.9	169	85	8	445	55	10	6	27	1.57
14835306--14835339	17	1.9	18	88	5	52	67	0	2	29	1.05
14835916--14835940	3	8.3	3	100	0	50	68	0	0	32	0.90
14847086--14847117	2	16.0	2	100	0	64	50	0	0	50	1.00
14849404--14849428	7	3.6	7	100	0	50	24	0	0	76	0.80
14849617--14849892	18	15.6	18	67	20	68	47	1	1	48	1.21
14849612--14849697	33	2.5	35	81	16	108	48	0	0	51	1.00
14849744--14849804	29	2.1	28	85	11	79	52	3	1	42	1.27
14849823--14849905	23	4.1	21	77	15	79	48	0	1	50	1.08
14849835--14849905	25	2.9	25	83	4	83	50	0	1	47	1.09
14850121--14850305	99	1.9	99	83	2	246	46	1	6	45	1.36
14861748--14861798	26	2.0	26	100	0	102	19	31	17	31	1.95
14869447--14869484	13	2.8	14	88	4	51	47	5	0	47	1.24
14881878--14881920	23	2.0	22	86	9	61	46	4	0	48	1.22
14885062--14885099	13	2.8	14	88	4	51	47	5	0	47	1.24
14896199--14896321	62	2.0	62	85	1	165	47	4	4	43	1.43
14930061--14930102	22	2.0	21	90	4	66	42	2	0	54	1.13
14930104--14930142	11	3.6	11	89	6	62	28	2	0	69	1.02
14940955--14940996	22	2.0	21	90	4	66	42	2	0	54	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14940998--14941036	11	3.6	11	89	6	62	28	2	0	69	1.02
14949366--14949400	2	17.5	2	87	0	52	2	0	48	48	1.16
14949400--14949441	2	21.0	2	100	0	84	50	0	50	0	1.00
14952074--14952098	3	8.3	3	100	0	50	0	0	36	64	0.94
14952765--14952802	17	2.3	17	86	4	51	63	0	5	31	1.17
14954479--14954522	20	2.3	19	84	7	54	59	2	2	36	1.23
14963948--14963989	11	3.6	11	84	12	57	30	0	0	69	0.89
14963953--14963993	13	3.3	13	83	13	59	29	0	0	70	0.87
14963948--14963990	6	7.3	6	82	12	54	30	0	0	69	0.88
14963940--14963993	24	2.3	24	90	3	83	33	0	0	66	0.92

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106