genome.fa.s57.2.7.7.80.10.50.1000.66.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167882.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_15, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22478863

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   

This is table  66  of  106  ( 12717 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11957038--11957147	21	5.2	21	81	4	123	37	4	7	50	1.50
11957038--11957158	42	2.9	42	85	3	154	37	4	7	50	1.52
11957096--11957184	21	4.1	22	78	4	83	38	5	6	49	1.53
11957517--11957746	22	10.5	22	73	4	160	39	7	7	46	1.60
11957463--11957645	88	2.1	88	81	2	206	40	6	6	45	1.56
11957484--11957711	44	5.2	45	76	4	162	38	7	7	47	1.58
11957466--11957746	66	4.3	66	76	5	196	39	6	7	46	1.58
11957782--11957839	22	2.6	22	83	5	64	39	6	3	50	1.46
11957745--11957845	44	2.3	44	79	3	105	37	9	3	48	1.55
11957625--11957839	118	1.8	118	80	4	263	38	8	6	46	1.60
11957825--11957909	44	1.9	44	81	9	102	32	9	4	52	1.54
11957955--11958259	22	13.8	21	69	15	90	39	6	4	49	1.49
11957991--11958156	46	3.7	47	73	15	116	38	5	6	50	1.50
11957949--11958244	44	6.7	44	69	12	140	39	6	4	49	1.48
11958495--11958585	22	4.2	22	75	1	76	39	6	8	45	1.61
11958667--11958796	66	2.0	65	83	4	163	32	5	7	54	1.51
11958672--11958797	22	5.8	22	74	5	85	31	4	7	55	1.50
11958735--11958833	43	2.3	43	80	5	119	35	6	4	54	1.44
11958896--11958937	22	1.9	22	85	0	57	35	4	9	50	1.56
11958993--11959063	22	3.2	21	80	7	70	38	8	2	50	1.47
11959029--11959155	57	2.2	57	98	0	245	39	8	6	45	1.60
11959145--11959207	22	2.9	22	83	4	74	33	9	7	49	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11959415--11959488	21	3.6	19	70	18	51	36	9	8	45	1.66
11963281--11963320	3	13.3	3	94	0	71	30	0	2	67	1.04
11966132--11966196	29	2.2	29	97	0	121	12	23	3	61	1.45
11967542--11967941	50	8.0	50	76	6	254	40	14	11	33	1.82
11967649--11967933	100	2.8	100	77	6	290	44	15	9	30	1.78
11969856--11969895	15	2.7	15	96	0	71	32	20	10	37	1.85
11972458--11972487	10	3.0	10	90	0	51	76	0	23	0	0.78
11979599--11979666	3	22.7	3	87	0	100	1	4	30	63	1.23
11979665--11979691	3	9.0	3	100	0	54	33	0	0	66	0.92
11980423--11980471	13	3.6	13	75	20	55	24	2	0	73	0.94
11980412--11980493	33	2.5	33	77	15	80	29	3	2	64	1.23
11981859--11981959	51	2.0	50	86	7	141	29	9	7	52	1.63
11982288--11982342	25	2.2	25	80	9	58	40	7	5	47	1.54
11982364--11982388	7	3.6	7	100	0	50	24	0	0	76	0.80
11982406--11982457	10	4.5	11	75	17	52	73	11	0	15	1.11
11982837--11982875	19	2.0	20	85	5	53	56	20	0	23	1.42
11983411--11983589	43	3.9	43	72	18	119	43	18	11	26	1.84
11984048--11984316	21	11.9	21	73	15	198	37	14	9	37	1.79
11984016--11984081	32	2.1	32	91	2	107	43	15	9	31	1.77
11984048--11984317	46	6.0	46	85	4	354	37	14	10	37	1.80
11985487--11985555	9	7.4	9	78	12	59	0	14	0	85	0.60
11985502--11985560	12	5.1	12	83	6	77	0	11	0	88	0.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11985494--11985562	10	6.8	11	81	17	71	0	14	0	85	0.60
11985482--11985562	29	2.8	29	85	9	87	1	16	0	82	0.73
11985495--11985591	20	4.7	21	75	8	83	4	13	0	82	0.81
11985495--11985570	40	1.9	40	89	5	118	1	13	0	85	0.66
11985496--11985589	28	3.4	28	82	7	93	4	13	0	81	0.82
11985544--11985593	13	3.5	15	77	17	54	10	16	0	74	1.08
11985481--11985577	29	3.4	27	74	17	81	3	15	0	81	0.81
11985495--11985560	1	66.0	1	75	0	60	0	12	0	87	0.53
11985505--11985589	23	3.4	26	80	18	76	4	14	0	81	0.85
11985544--11985593	21	2.4	22	90	6	77	10	16	0	74	1.08
11988826--11988871	23	2.0	24	82	4	58	67	6	2	23	1.25
11989498--11989606	50	2.2	50	88	5	157	24	10	8	56	1.59
11989801--11989825	7	3.6	7	100	0	50	24	0	0	76	0.80
11990042--11990092	11	4.4	11	79	13	57	72	11	0	15	1.12
11990608--11990644	19	1.9	19	88	0	56	43	10	8	37	1.69
11992402--11992442	22	1.9	21	85	5	55	9	12	9	68	1.40
11993389--11993426	11	3.5	11	82	7	51	7	7	42	42	1.63
11994901--11994968	21	3.1	21	77	10	57	52	2	2	41	1.31
11994927--11994960	17	2.1	16	88	5	50	67	0	0	32	0.91
11994915--11994977	21	3.0	20	77	9	63	61	3	0	34	1.12
11995270--11995308	20	1.9	21	85	15	55	46	2	5	46	1.38
11996337--11996395	22	2.8	21	79	5	57	49	3	1	45	1.28
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11997345--11997408	18	3.7	17	75	10	58	25	1	3	70	1.11
11998386--11998418	16	1.9	18	88	11	52	54	6	3	36	1.41
11998509--11998539	14	2.3	13	94	5	53	70	0	0	29	0.87
12000750--12000775	2	13.0	2	100	0	52	50	0	50	0	1.00
12016027--12016076	2	26.5	2	80	11	61	48	2	2	48	1.24
12016036--12016095	21	2.9	21	83	14	63	48	3	1	46	1.28
12018346--12018395	2	25.5	2	91	4	57	50	8	0	42	1.32
12019626--12019668	21	2.0	22	86	13	63	32	0	2	65	1.06
12022745--12022782	16	2.6	15	88	12	53	13	0	5	81	0.85
12026077--12026114	17	2.2	17	95	0	67	28	23	13	34	1.92
12026678--12026732	11	5.2	11	78	8	51	61	3	1	32	1.24
12026688--12026803	9	12.6	9	69	8	56	57	5	2	34	1.34
12026792--12026831	17	2.4	16	84	8	53	67	0	5	27	1.11
12026873--12026921	24	2.0	24	84	8	62	61	0	0	38	0.96
12026966--12027070	55	1.9	56	82	9	135	32	1	6	59	1.34
12027049--12027095	17	2.6	18	76	6	51	31	0	10	57	1.33
12027085--12027133	19	2.6	19	81	15	66	46	2	4	46	1.33
12027321--12027372	8	6.1	8	80	12	50	38	3	1	55	1.29
12027328--12027372	18	2.6	17	86	6	63	40	4	0	55	1.20
12027338--12027401	10	6.4	10	70	13	51	31	4	0	64	1.14
12027351--12027437	30	2.8	31	85	3	113	39	2	1	57	1.19
12027330--12027442	9	11.7	9	66	20	50	38	3	0	57	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12032666--12032706	13	3.2	13	100	0	82	14	21	14	48	1.80
12034827--12034863	2	18.5	2	100	0	74	48	0	0	51	1.00
12038698--12038740	21	2.0	21	82	8	52	58	0	2	39	1.11
12039894--12039955	24	2.6	24	97	0	115	22	32	19	25	1.97
12044756--12044791	18	2.0	18	88	0	54	47	8	16	27	1.75
12044795--12044840	16	2.9	16	75	12	58	56	10	10	21	1.64
12069568--12069629	24	2.6	24	97	0	115	25	19	32	22	1.97
12073059--12073094	17	2.1	17	89	0	54	50	5	0	44	1.25
12073731--12073759	12	2.3	13	94	5	51	20	0	0	79	0.74
12074333--12074369	12	3.0	12	92	4	56	59	2	0	37	1.12
12073495--12074549	400	2.7	394	80	6	1118	41	8	5	44	1.59
12081697--12081789	28	3.4	27	74	15	68	53	3	1	41	1.24
12081740--12081801	28	2.2	28	85	0	79	58	3	0	38	1.15
12082242--12082294	22	2.5	21	76	11	54	41	0	1	56	1.10
12082312--12082344	10	3.4	10	83	8	50	66	0	0	33	0.92
12088726--12088762	2	18.5	2	88	0	56	51	5	0	43	1.24
12089753--12089819	33	2.0	33	97	0	125	40	4	14	40	1.67
12092870--12092908	2	19.5	2	83	0	51	58	0	0	41	0.98
12092865--12092908	10	4.2	10	83	11	52	59	0	2	38	1.10
12092870--12092908	12	3.2	12	88	0	60	58	0	0	41	0.98
12094457--12094501	12	3.5	13	82	14	58	31	15	2	51	1.56
12103597--12103639	23	1.9	22	85	4	59	32	2	0	65	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12103780--12103830	21	2.4	21	77	6	50	33	1	11	52	1.49
12104184--12104212	15	2.0	15	93	6	51	27	0	17	55	1.42
12105954--12106006	26	2.0	26	85	7	72	52	0	0	47	1.00
12105996--12106025	6	5.0	6	100	0	60	50	0	0	50	1.00
12112655--12112688	4	8.2	4	93	6	59	76	0	23	0	0.79
12112655--12112688	13	2.8	12	95	4	59	76	0	23	0	0.79
12114910--12114973	27	2.4	27	92	5	103	37	14	7	40	1.74
12123178--12123216	15	2.5	16	91	4	62	43	20	0	35	1.52
12128453--12128479	10	2.7	10	100	0	54	18	18	11	51	1.74
12142435--12142487	26	2.0	26	96	0	97	58	9	15	16	1.62

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106