genome.fa.s57.2.7.7.80.10.50.1000.90.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167882.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_15, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22478863

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   

This is table  90  of  106  ( 12717 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18539866--18539907	22	1.9	22	85	0	57	64	2	2	30	1.19
18546943--18547147	103	2.0	105	89	2	315	28	13	30	28	1.94
18550378--18550416	17	2.2	18	90	4	62	17	5	0	76	0.96
18551119--18551189	33	2.1	33	81	2	79	52	2	9	35	1.49
18552427--18552455	2	14.5	2	100	0	58	48	0	0	51	1.00
18553284--18553315	2	16.0	2	100	0	64	0	50	0	50	1.00
18553535--18553593	3	19.7	3	91	0	91	28	0	3	67	1.06
18554540--18554584	21	2.0	21	83	8	54	26	6	28	37	1.82
18555873--18555900	2	14.0	2	100	0	56	0	50	0	50	1.00
18558218--18558249	2	16.5	2	93	6	57	50	0	0	50	1.00
18559426--18559507	22	3.5	22	77	8	65	60	1	0	37	1.04
18559446--18559513	25	2.9	23	77	14	68	61	1	0	36	1.05
18559626--18559660	14	2.5	14	90	0	52	45	0	2	51	1.16
18560277--18560321	19	2.2	19	84	11	54	46	0	0	53	1.00
18560295--18560340	16	2.6	18	80	13	51	52	2	0	45	1.13
18560365--18560412	20	2.4	21	80	16	57	58	2	6	33	1.35
18569883--18569911	14	2.1	14	93	6	51	51	0	3	44	1.18
18572277--18572310	6	5.7	6	89	0	50	14	17	14	52	1.74
18583670--18583716	22	2.1	22	84	7	60	59	0	0	40	0.97
18583732--18583771	13	3.2	12	82	10	53	57	0	0	42	0.98
18583758--18583805	8	5.9	8	76	13	53	58	2	0	39	1.10
18583680--18583818	31	4.3	33	73	18	100	54	1	1	42	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18584360--18584425	27	2.5	27	85	4	64	33	10	9	46	1.70
18584369--18584425	27	2.1	27	93	0	96	33	10	10	45	1.73
18592314--18592355	21	2.0	21	100	0	84	38	0	42	19	1.51
18595021--18595056	18	1.9	18	88	5	54	72	0	0	27	0.85
18595358--18595400	13	3.6	12	81	12	52	62	2	2	32	1.20
18601402--18601528	34	3.7	34	77	4	112	41	3	6	48	1.47
18601394--18601530	68	2.0	66	80	2	148	40	3	6	49	1.46
18609202--18609241	21	2.0	20	85	5	53	5	27	0	67	1.11
18613880--18613905	1	26.0	1	100	0	52	100	0	0	0	0.00
18616136--18616196	30	2.0	30	87	0	86	44	13	14	27	1.83
18629970--18630030	24	2.6	24	80	10	63	39	0	1	59	1.08
18630027--18630091	24	2.8	24	78	17	66	56	0	0	43	0.99
18630017--18630120	50	2.0	52	82	10	126	51	0	0	46	1.13
18630017--18630091	24	3.0	24	70	18	64	53	0	0	46	1.00
18630652--18630709	13	4.8	12	83	10	73	65	0	0	34	0.93
18630660--18630709	24	2.1	23	85	14	66	68	0	0	32	0.90
18630721--18630762	10	4.2	10	77	22	52	66	0	0	33	0.92
18633136--18633178	2	21.5	2	100	0	86	48	0	0	51	1.00
18633899--18633953	23	2.2	26	82	17	73	49	1	0	49	1.11
18635110--18635152	17	2.5	18	81	11	54	46	2	2	48	1.27
18635660--18635695	12	2.8	14	80	20	51	47	0	0	52	1.00
18638752--18638799	25	1.9	25	86	0	69	39	4	2	54	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18639365--18639406	11	3.9	11	76	17	52	40	0	0	59	0.97
18639462--18639515	8	6.6	8	78	18	58	29	0	0	70	0.88
18639466--18639515	23	2.1	23	85	14	66	28	0	0	72	0.86
18639462--18639515	18	3.3	15	85	12	63	29	0	0	70	0.88
18639692--18639742	12	4.5	11	80	9	59	49	7	1	41	1.43
18641508--18641550	20	2.1	21	86	4	61	41	0	0	58	0.98
18643199--18643245	19	2.4	20	78	3	51	25	10	4	59	1.49
18645116--18645141	2	13.0	2	100	0	52	50	0	0	50	1.00
18647849--18647893	2	22.5	2	100	0	90	48	0	0	51	1.00
18648813--18648852	18	2.1	19	86	9	55	42	5	7	45	1.54
18654200--18654253	28	1.9	28	96	0	99	44	9	11	35	1.72
18654668--18655613	233	4.0	234	81	8	1039	41	10	5	42	1.61
18658308--18658368	17	3.3	18	82	11	70	34	0	1	63	1.04
18658323--18658376	20	2.7	21	83	13	62	33	0	3	62	1.12
18658308--18658380	36	1.9	36	81	8	83	34	0	4	61	1.15
18658323--18658380	19	3.0	19	80	9	64	32	0	5	62	1.18
18664725--18664772	15	3.3	14	79	5	51	60	6	0	33	1.22
18669737--18669781	18	2.5	18	100	0	90	53	0	0	46	1.00
18669737--18669789	5	9.0	6	82	17	67	50	0	0	49	1.00
18669879--18669917	13	3.2	13	79	20	57	48	0	0	51	1.00
18669874--18669941	23	3.0	23	81	10	86	42	0	0	57	0.98
18669931--18669971	18	2.3	18	95	0	73	68	0	0	31	0.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18678520--18678596	14	5.3	15	73	16	56	63	2	1	32	1.16
18678543--18678608	21	3.2	21	78	8	82	62	4	1	31	1.25
18683051--18683093	19	2.3	19	100	0	86	46	11	27	13	1.78
18687556--18687601	13	3.7	13	80	8	51	50	0	0	50	1.00
18687587--18687636	20	2.5	20	77	3	57	58	8	2	32	1.39
18689837--18689879	21	2.0	21	100	0	86	27	9	23	39	1.85
18692461--18692494	16	2.1	16	88	0	50	32	0	23	44	1.54
18694543--18694597	14	3.4	16	74	18	60	50	1	0	47	1.11
18696049--18696090	19	2.3	18	87	4	57	50	2	4	42	1.36
18708301--18708370	33	2.1	33	97	0	131	32	17	12	37	1.87
18713579--18713619	2	20.5	2	100	0	82	48	0	0	51	1.00
18716083--18716107	2	12.5	2	100	0	50	48	0	52	0	1.00
18721071--18721105	2	18.0	2	94	5	63	48	0	0	51	1.00
18721877--18721930	24	2.2	24	83	0	63	24	33	14	27	1.94
18729364--18729397	2	17.0	2	93	0	59	52	0	0	47	1.00
18734573--18734734	62	2.6	62	94	0	279	38	17	6	37	1.76
18734690--18734786	49	2.0	49	100	0	194	39	19	6	35	1.77
18735166--18735200	2	17.5	2	93	0	61	45	0	0	54	0.99
18738599--18738644	22	2.1	22	91	0	74	50	34	4	10	1.57
18743944--18743989	22	2.1	21	92	4	74	58	4	6	30	1.43
18744145--18744237	13	7.2	13	75	17	79	52	1	2	44	1.20
18744133--18744235	31	3.6	29	75	20	101	53	1	2	41	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18744161--18744205	23	2.0	23	95	0	81	55	0	2	42	1.12
18744111--18744240	54	2.4	54	87	1	181	54	1	2	41	1.22
18744121--18744188	15	4.3	15	83	9	82	57	1	1	39	1.17
18744351--18744399	25	1.9	25	87	4	71	48	2	2	46	1.25
18745378--18745410	17	2.0	17	88	5	50	57	0	0	42	0.98
18745804--18745888	26	3.4	25	80	18	97	47	2	0	50	1.14
18747477--18747596	63	1.9	63	83	5	154	38	6	5	50	1.51
18747555--18747746	62	3.1	61	77	11	212	41	8	7	42	1.64
18748037--18748299	142	1.8	142	85	6	366	44	7	7	39	1.61
18748037--18748330	142	2.0	138	79	11	295	42	8	7	41	1.63
18748330--18748471	60	2.4	59	84	7	171	47	6	7	39	1.56
18749505--18749530	3	8.7	3	100	0	52	69	0	0	30	0.89
18770529--18770574	22	2.1	21	88	8	65	54	2	4	39	1.32
18771574--18771634	29	2.1	29	90	0	95	49	1	3	45	1.28
18772487--18772540	16	3.4	16	80	12	58	46	1	5	46	1.37
18777901--18777937	2	18.5	2	100	0	74	48	0	0	51	1.00
18781618--18781645	2	14.0	2	100	0	56	50	0	0	50	1.00
18781901--18781955	22	2.5	20	80	13	56	60	3	0	36	1.15
18781920--18781985	21	2.9	23	80	15	75	66	6	0	27	1.15
18786825--18786858	14	2.4	14	90	0	50	8	14	2	73	1.19
18796513--18796560	12	4.3	11	84	12	62	37	0	8	54	1.31
18805782--18805806	3	8.3	3	100	0	50	32	0	36	32	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18809390--18809450	30	2.0	30	93	6	106	13	26	26	34	1.93
18818798--18818848	23	2.2	24	86	10	70	45	0	1	52	1.12
18819377--18819418	21	2.0	21	86	9	59	30	2	0	66	1.04
18819385--18819496	22	5.0	22	66	20	54	40	3	1	54	1.28
18829508--18829601	48	2.0	48	95	0	170	28	21	20	29	1.98
18832594--18832618	7	3.6	7	100	0	50	56	0	16	28	1.41
18839467--18839508	21	2.0	21	86	9	59	30	2	0	66	1.04
18839475--18839586	22	5.0	22	66	20	54	40	3	1	54	1.28
18841910--18841955	23	2.0	22	84	12	58	30	0	4	65	1.12
18849555--18849702	54	3.0	48	86	11	224	27	20	20	31	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106