genome.fa.s57.2.7.7.80.10.50.1000.42.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167882.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_15, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22478863

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   

This is table  42  of  106  ( 12717 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7526576--7526649	31	2.3	34	81	11	93	48	2	1	47	1.24
7526604--7526648	17	2.7	18	83	10	60	44	4	0	51	1.21
7526748--7526887	17	8.1	18	65	28	56	47	2	2	47	1.32
7526838--7526917	22	3.7	21	72	16	65	52	1	1	45	1.16
7527010--7527044	18	1.9	18	88	0	52	42	2	2	51	1.31
7527327--7527370	19	2.2	20	84	11	56	54	4	4	36	1.41
7527757--7528282	180	2.9	179	80	6	576	38	11	9	41	1.73
7528330--7528676	181	1.9	181	84	2	464	42	10	7	38	1.69
7528703--7528748	25	2.0	24	83	12	60	43	0	4	52	1.21
7530720--7530773	8	7.1	8	74	19	53	33	0	1	64	1.04
7530717--7530773	15	3.8	15	81	6	53	33	0	1	64	1.04
7530716--7530773	19	3.1	19	75	25	61	32	0	1	65	1.03
7531244--7531282	19	2.1	18	90	4	60	43	0	0	56	0.99
7531247--7531300	19	2.7	19	77	13	56	46	0	1	51	1.11
7532141--7532186	24	1.9	24	82	8	58	43	2	2	52	1.25
7532128--7532208	41	2.0	40	83	7	101	43	2	1	53	1.22
7532440--7532481	19	2.4	17	88	8	57	47	2	2	47	1.28
7532548--7532578	15	2.0	16	93	6	55	38	0	0	61	0.96
7532849--7532894	19	2.4	20	79	17	53	58	2	2	36	1.22
7533018--7533058	19	2.2	19	86	0	55	48	4	0	46	1.23
7533491--7534064	183	3.2	181	80	7	648	44	9	6	39	1.65
7534635--7535203	180	3.1	178	75	9	474	40	7	9	42	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7536141--7536176	18	2.0	18	88	0	54	55	0	0	44	0.99
7536580--7536647	26	2.7	24	75	6	64	48	0	5	45	1.26
7536677--7536725	22	2.3	21	82	3	62	48	2	0	48	1.12
7536790--7536832	22	2.0	22	86	9	61	39	0	6	53	1.28
7536973--7537093	39	3.3	37	79	14	110	52	0	0	45	1.12
7536979--7537113	31	4.3	30	71	14	94	50	0	0	48	1.11
7537083--7537135	24	2.2	25	86	10	74	45	0	0	54	0.99
7537256--7537299	13	3.5	13	82	11	56	52	0	2	45	1.13
7537226--7537298	32	2.3	30	80	13	76	49	0	4	46	1.21
7537307--7537355	16	2.9	16	84	6	62	44	0	0	55	0.99
7537261--7537362	22	4.4	23	73	15	70	47	0	1	50	1.12
7537316--7537373	23	2.4	24	76	23	68	43	0	0	56	0.99
7539127--7539182	7	7.9	7	78	15	53	78	0	19	1	0.84
7539127--7539182	8	6.8	8	76	15	51	78	0	19	1	0.84
7539118--7539184	27	2.5	28	78	14	86	76	0	20	2	0.92
7539130--7539176	13	3.5	13	81	16	60	80	0	19	0	0.70
7539964--7540189	63	3.6	63	85	1	283	34	11	26	26	1.91
7539964--7540239	63	4.4	63	83	0	255	33	11	26	27	1.92
7539964--7540261	126	2.4	126	80	1	328	34	11	26	27	1.91
7540658--7540839	46	4.0	46	88	4	208	44	8	12	34	1.73
7540658--7540839	92	2.0	92	84	2	240	44	8	12	34	1.73
7540752--7540828	21	3.5	21	76	13	91	45	5	14	35	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7541363--7541435	17	4.2	19	71	15	68	50	0	2	46	1.15
7541341--7541485	9	16.6	9	68	19	60	45	0	3	51	1.18
7541363--7541471	36	3.0	36	76	16	100	47	0	3	48	1.19
7541344--7541480	23	5.7	23	69	20	70	45	0	3	50	1.19
7541421--7541498	26	3.0	25	80	9	68	43	1	2	52	1.23
7541614--7541659	22	2.1	21	88	4	65	50	2	0	47	1.13
7542496--7542522	14	1.9	14	100	0	54	37	0	3	59	1.15
7543063--7543117	25	2.2	26	83	6	69	45	0	1	52	1.11
7543123--7543343	17	13.2	17	68	26	86	51	0	1	46	1.15
7543138--7543236	48	2.0	49	83	9	123	48	0	2	49	1.12
7543138--7543254	49	2.4	48	79	12	116	50	0	1	47	1.11
7543154--7543369	108	1.9	111	80	11	249	50	0	0	47	1.10
7543273--7543356	24	3.4	25	76	15	79	52	1	0	46	1.08
7543427--7543463	16	2.5	14	91	8	56	56	0	0	43	0.99
7543570--7543612	23	1.9	22	81	13	52	46	2	6	44	1.43
7543692--7543737	14	2.9	16	81	18	53	47	0	2	50	1.13
7543652--7543797	12	12.2	12	69	21	60	50	0	2	47	1.15
7543834--7544733	180	5.0	177	76	9	684	39	8	9	42	1.67
7545329--7545427	41	2.4	42	77	13	105	46	2	3	48	1.29
7545453--7545486	10	3.3	10	88	8	50	52	0	0	47	1.00
7545447--7545497	21	2.5	20	76	17	50	50	0	0	49	1.00
7546562--7546648	32	2.6	33	75	15	90	48	3	1	47	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7546693--7546789	30	3.0	34	75	14	98	48	2	1	48	1.20
7546721--7546796	22	3.4	21	76	18	64	48	1	0	50	1.09
7546725--7546787	25	2.5	25	78	14	67	52	1	0	46	1.10
7547513--7547556	13	3.2	13	83	6	52	47	0	6	45	1.29
7547604--7547649	6	7.8	6	80	20	53	52	0	0	47	1.00
7547604--7547649	14	3.9	12	78	21	53	52	0	0	47	1.00
7547604--7547649	20	2.2	22	88	11	71	52	0	0	47	1.00
7547712--7547768	19	3.1	17	78	16	51	47	1	1	49	1.22
7548196--7548232	19	2.0	19	89	5	58	35	5	0	59	1.20
7547960--7548946	180	5.5	177	76	10	820	40	8	9	41	1.68
7548950--7550126	180	6.5	181	77	7	1122	39	8	10	41	1.69
7548326--7549643	675	1.9	670	81	5	1541	39	8	9	41	1.68
7548950--7550128	360	3.3	359	80	4	1236	39	8	10	41	1.69
7548977--7550168	540	2.2	539	81	4	1334	39	8	9	42	1.68
7550364--7550409	17	2.6	18	80	16	60	41	0	2	56	1.11
7550893--7550937	19	2.4	19	85	10	58	55	0	2	42	1.12
7551031--7551089	31	1.9	31	82	6	75	47	3	3	45	1.36
7551072--7551103	13	2.5	13	89	0	55	50	0	6	43	1.27
7551190--7551241	23	2.3	23	83	6	61	36	5	3	53	1.43
7551475--7551508	16	2.1	17	88	5	52	52	0	2	44	1.16
7551512--7551552	20	2.1	20	86	4	57	53	2	2	41	1.27
7552828--7552867	21	1.9	21	100	0	80	15	25	30	30	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7552829--7552878	21	2.4	21	90	3	75	18	30	24	28	1.97
7553912--7553956	17	2.6	17	86	10	56	48	0	2	48	1.13
7553921--7553963	14	3.1	14	90	6	61	46	0	0	53	1.00
7554297--7554355	29	2.1	27	84	6	73	54	5	0	40	1.23
7554605--7554636	14	2.4	14	94	5	57	50	0	0	50	1.00
7554626--7554682	24	2.4	24	80	16	64	45	7	0	47	1.30
7554710--7554759	16	3.1	16	80	8	57	48	2	0	50	1.12
7554792--7554845	25	2.2	24	80	6	65	55	1	1	40	1.21
7554941--7555001	10	5.7	12	78	18	55	45	0	0	54	1.00
7555081--7555141	26	2.3	27	83	13	83	47	0	3	49	1.18
7555180--7555221	14	2.9	14	80	13	50	50	2	0	47	1.14
7555365--7555427	27	2.3	27	83	5	74	44	4	3	47	1.40
7555715--7555779	19	3.8	18	80	11	57	46	0	1	52	1.10
7555741--7555779	15	2.4	17	83	12	55	48	0	0	51	1.00
7555927--7556689	180	4.2	177	74	8	551	39	8	9	42	1.67
7556752--7556850	15	7.2	14	69	23	59	47	2	2	48	1.24
7557152--7557211	24	2.5	24	82	15	63	51	6	1	40	1.38
7557999--7558336	182	1.9	181	82	3	430	42	12	8	36	1.73
7557994--7558364	181	2.1	182	80	6	414	43	12	8	36	1.72
7558199--7558521	156	2.1	155	79	5	339	41	11	6	40	1.67
7558386--7558706	177	1.8	176	83	2	428	39	7	8	44	1.64
7559649--7559714	21	3.1	21	82	2	87	53	1	0	45	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7559664--7559741	22	3.6	22	75	11	56	55	2	1	41	1.22
7560079--7560133	26	2.1	26	90	6	85	47	3	3	45	1.38
7560087--7560159	25	2.8	26	79	8	69	49	2	2	45	1.31
7560827--7560873	21	2.2	20	82	10	58	42	2	4	51	1.33
7561003--7561052	16	2.9	17	82	14	59	50	2	2	46	1.24
7561246--7561288	22	2.0	22	85	0	59	41	2	0	55	1.12
7561646--7561702	20	2.7	23	70	25	54	54	0	5	40	1.23
7562024--7562080	28	2.1	28	81	9	66	43	0	1	54	1.10
7562962--7563008	10	4.7	10	81	7	60	46	0	2	51	1.13
7563620--7563648	13	2.2	13	100	0	58	37	6	6	48	1.57

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106