genome.fa.s57.2.7.7.80.10.50.1000.96.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167882.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_15, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22478863

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   

This is table  96  of  106  ( 12717 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20284878--20284995	10	11.7	10	71	20	61	70	1	0	27	1.03
20284814--20284968	54	3.0	51	78	16	149	63	2	2	30	1.21
20298018--20298058	20	2.0	21	86	13	59	51	0	2	46	1.14
20298074--20298112	18	2.1	18	85	4	51	64	0	0	35	0.94
20298520--20298569	3	16.7	3	100	0	100	66	0	0	34	0.92
20298775--20298813	2	19.5	2	100	0	78	51	0	0	48	1.00
20299794--20299828	11	3.2	11	84	15	54	82	14	0	2	0.77
20300579--20300623	20	2.3	19	76	3	54	13	55	28	2	1.50
20301125--20301168	18	2.4	18	84	3	52	63	2	2	31	1.19
20300964--20301513	210	2.7	208	90	4	860	42	8	15	33	1.78
20301638--20302008	192	1.9	191	96	1	681	35	12	15	36	1.85
20303103--20303137	15	2.2	16	90	5	54	57	2	0	40	1.14
20310500--20310529	8	3.9	8	91	8	53	93	0	6	0	0.35
20310498--20310529	15	2.1	15	100	0	64	93	0	6	0	0.34
20311299--20312362	47	22.9	47	92	5	1697	25	13	26	34	1.93
20311299--20312362	277	3.8	283	93	5	1708	25	13	26	34	1.93
20311299--20312369	93	11.5	93	91	5	1626	25	14	26	34	1.94
20312536--20312570	11	3.2	11	84	15	54	82	14	0	2	0.77
20313322--20313366	20	2.3	19	76	3	54	13	55	28	2	1.50
20313869--20313912	18	2.4	18	84	3	52	63	2	2	31	1.19
20313691--20314260	209	2.7	208	89	5	862	42	8	15	32	1.77
20314282--20314331	21	2.3	23	77	19	63	60	0	0	40	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20314393--20314764	193	1.9	192	96	1	692	36	12	15	36	1.85
20321703--20321736	17	1.9	18	88	5	52	26	20	2	50	1.63
20323922--20323975	15	3.7	15	71	26	53	66	5	1	25	1.23
20333879--20333943	32	2.0	32	84	0	85	18	3	32	46	1.65
20333892--20333943	16	3.2	16	80	0	59	17	1	32	48	1.58
20335030--20335085	20	2.9	20	84	5	71	1	3	14	80	0.93
20335398--20335458	23	2.6	22	82	10	59	11	3	13	72	1.24
20339471--20339521	22	2.3	22	79	0	57	31	31	15	21	1.95
20339635--20339895	103	2.5	103	84	6	341	37	15	14	32	1.88
20339763--20340035	142	1.9	142	87	3	397	38	13	13	35	1.83
20340089--20340154	22	3.0	23	78	12	77	33	18	16	31	1.93
20342124--20342167	21	2.1	21	83	8	54	59	4	4	31	1.38
20342159--20342225	30	2.3	30	89	7	102	64	2	2	29	1.23
20342159--20342229	29	2.4	31	88	9	112	64	2	2	29	1.22
20343562--20343620	26	2.3	26	88	5	84	71	11	6	10	1.31
20344538--20344579	20	2.2	20	91	4	68	73	7	0	19	1.05
20346105--20346164	29	2.1	29	93	0	102	40	16	13	30	1.87
20347005--20347044	20	2.0	20	85	0	53	7	30	2	60	1.38
20358722--20358786	24	2.7	23	73	19	62	44	0	1	53	1.09
20363612--20363668	30	1.9	30	85	7	80	36	3	5	54	1.40
20365357--20365385	2	14.5	2	100	0	58	48	0	0	51	1.00
20376411--20376455	3	15.0	3	100	0	90	33	0	0	66	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20376883--20376909	14	1.9	14	100	0	54	81	14	0	3	0.82
20377389--20377429	5	8.2	5	89	10	66	17	2	0	80	0.82
20377384--20377429	20	2.3	19	88	7	65	15	4	0	80	0.86
20377578--20377626	3	16.3	3	100	0	98	67	0	0	32	0.91
20377870--20377896	11	2.5	11	100	0	54	81	0	0	18	0.69
20378801--20378829	7	4.1	7	100	0	58	55	0	0	44	0.99
20378908--20378935	2	14.0	2	100	0	56	50	0	0	50	1.00
20382830--20382884	3	18.3	3	96	0	101	67	0	1	30	1.01
20385040--20385079	18	2.2	18	86	0	53	45	12	2	40	1.56
20386001--20386044	3	15.0	3	95	4	81	68	0	0	31	0.90
20396081--20396139	30	1.9	31	82	3	75	61	1	16	20	1.44
20398922--20398966	19	2.3	18	82	14	54	71	4	4	20	1.21
20398925--20399010	21	4.2	21	79	8	61	70	2	4	22	1.16
20398954--20399019	21	3.2	21	86	2	89	74	0	4	21	1.00
20399872--20399904	16	2.1	15	94	5	57	51	15	0	33	1.43
20400128--20400312	37	5.0	37	75	5	158	48	9	19	23	1.77
20400137--20400313	74	2.4	74	82	1	212	48	8	19	24	1.76
20400261--20400463	93	2.2	93	88	0	298	44	12	20	22	1.85
20415008--20415037	1	30.0	1	93	0	51	96	0	3	0	0.21
20424668--20424715	3	16.0	3	100	0	96	66	0	0	33	0.92
20429099--20429156	31	1.9	30	86	10	82	60	0	1	37	1.07
20440332--20440372	20	2.0	20	100	0	82	29	9	34	26	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20445634--20445716	23	3.6	23	77	8	87	48	0	2	49	1.14
20445690--20445784	32	3.0	30	78	14	86	43	0	7	49	1.30
20445851--20445901	22	2.3	22	83	10	59	52	1	3	41	1.31
20445973--20446006	17	1.9	17	94	5	59	50	0	0	50	1.00
20453170--20453207	18	2.1	18	100	0	76	57	15	0	26	1.38
20456016--20456140	63	2.0	64	88	4	191	40	5	8	45	1.59
20456044--20456148	32	3.3	31	72	13	106	44	5	5	43	1.51
20456212--20456374	80	2.1	79	88	3	238	31	12	14	41	1.84
20456992--20457022	13	2.5	13	94	5	55	22	6	19	51	1.69
20457879--20458149	135	2.0	135	95	0	488	31	9	14	45	1.76
20460068--20460097	2	15.0	2	92	0	51	46	0	3	50	1.18
20461431--20461467	18	2.0	20	84	10	51	37	10	16	35	1.83
20463838--20463896	16	3.8	16	73	8	59	49	30	1	18	1.58
20472345--20472398	17	3.1	17	76	10	56	50	1	1	46	1.23
20472412--20472449	20	1.9	20	88	0	58	55	2	0	42	1.14
20472372--20472497	15	8.6	15	66	23	72	57	3	0	39	1.15
20472548--20472578	14	2.3	13	94	5	53	48	3	0	48	1.17
20472522--20472614	15	5.4	18	69	24	60	46	2	0	51	1.13
20472540--20472649	32	3.3	33	81	12	111	45	0	0	53	1.06
20472550--20472650	15	6.6	15	73	14	82	46	0	0	52	1.07
20472592--20472654	31	2.0	33	93	6	112	41	0	0	58	0.98
20472596--20472667	33	2.2	33	82	9	85	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20472580--20472685	26	3.9	26	78	17	99	46	0	0	53	1.00
20472585--20472704	58	2.1	58	81	9	138	45	0	0	55	0.99
20475347--20475393	15	3.3	15	70	11	53	40	0	21	38	1.53
20475339--20475396	28	2.1	28	96	0	107	37	0	22	39	1.54
20475332--20475383	13	3.8	13	75	12	50	44	0	21	34	1.52
20475346--20475404	28	2.1	28	87	0	82	49	0	18	32	1.48
20475963--20476038	37	2.1	37	85	5	100	19	17	30	32	1.95
20479448--20479490	19	2.3	19	100	0	86	30	11	34	23	1.90
20484036--20484071	18	1.9	19	88	5	56	30	2	61	5	1.33
20484321--20484359	3	13.0	3	100	0	78	66	0	33	0	0.92
20484892--20484951	31	1.9	31	83	6	77	41	0	5	53	1.23
20484906--20484972	28	2.3	31	87	10	97	35	0	2	61	1.12
20490740--20490837	48	2.0	48	98	0	187	40	21	10	27	1.85
20490751--20490828	24	3.2	24	63	20	63	41	21	10	26	1.85
20492897--20492925	3	9.7	3	100	0	58	68	0	0	31	0.89
20500649--20500731	21	4.0	21	98	0	157	25	24	26	24	2.00
20500742--20500784	21	2.1	21	95	4	79	25	23	25	25	2.00
20503311--20503339	6	4.8	6	100	0	58	34	48	17	0	1.47
20509043--20509118	34	2.2	33	77	6	80	34	14	15	35	1.88
20510388--20511125	161	4.6	158	80	5	628	41	14	10	33	1.80
20510388--20511127	321	2.3	319	80	5	778	41	14	10	33	1.80
20512326--20512361	13	2.8	13	86	0	54	61	5	8	25	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20514596--20514637	21	2.0	21	85	0	57	38	21	7	33	1.81
20517155--20517347	96	2.0	96	97	0	368	34	9	16	39	1.81
20517404--20517549	61	2.3	64	76	13	149	36	14	9	39	1.79
20517443--20517662	117	1.9	114	81	10	268	36	10	12	40	1.77
20517554--20517758	105	2.0	101	80	10	233	42	7	12	37	1.71
20521811--20521987	62	2.8	61	85	3	201	32	16	11	39	1.85
20522239--20522400	63	2.6	63	79	12	167	33	16	11	37	1.85
20523318--20523342	6	4.2	6	100	0	50	36	48	16	0	1.46
20527634--20527738	52	2.0	52	83	0	129	29	21	7	40	1.81
20528674--20528713	11	3.6	11	86	0	62	55	22	0	22	1.44

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106