genome.fa.s57.2.7.7.80.10.50.1000.20.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167882.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_15, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22478863

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   

This is table  20  of  106  ( 12717 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3475021--3475280	133	2.0	132	86	2	369	25	20	16	37	1.93
3475134--3475393	110	2.4	110	85	1	351	24	22	16	35	1.95
3475354--3475415	23	2.7	22	87	7	88	27	25	17	29	1.98
3475244--3475952	133	5.3	133	82	4	736	24	21	17	37	1.94
3475361--3475426	22	3.0	22	81	2	69	28	22	18	30	1.97
3475508--3475554	22	2.1	23	84	4	60	25	21	21	31	1.98
3475244--3476318	266	4.0	266	77	9	1087	23	21	17	37	1.94
3475760--3475826	22	3.0	22	77	2	62	29	28	13	28	1.94
3475905--3475980	22	3.4	22	83	5	82	28	22	15	32	1.95
3475778--3476096	154	2.1	155	83	2	399	23	19	18	38	1.93
3476040--3476090	23	2.2	23	92	0	84	21	19	25	33	1.97
3476047--3476113	22	3.0	22	86	2	80	25	20	20	32	1.97
3475908--3476318	133	3.1	131	86	4	533	23	21	18	37	1.94
3475787--3476113	155	2.1	154	82	2	370	23	20	18	37	1.94
3476173--3476240	23	3.0	23	82	2	84	26	25	20	27	1.99
3476180--3476245	22	3.0	21	80	10	69	28	24	18	28	1.98
3475508--3476297	420	1.9	421	82	5	1017	23	21	17	37	1.94
3476323--3476523	110	1.8	110	83	4	271	26	21	14	37	1.92
3476669--3476719	9	5.8	9	83	4	59	58	0	0	41	0.98
3476669--3476709	3	13.7	3	84	0	55	58	0	0	41	0.98
3478221--3478319	16	6.1	16	76	10	76	47	32	2	18	1.60
3478221--3478319	33	3.0	32	83	5	119	47	32	2	18	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3478221--3478304	32	2.6	33	86	1	116	47	33	1	17	1.56
3478344--3478429	37	2.3	38	96	2	133	50	30	1	18	1.55
3478351--3478446	16	5.8	16	65	19	54	46	31	0	21	1.52
3495230--3495269	20	2.0	21	90	9	66	50	5	7	37	1.53
3496245--3496278	16	2.2	16	89	5	52	47	0	0	52	1.00
3497525--3497572	22	2.2	22	88	0	69	22	4	8	64	1.38
3499232--3499257	10	2.6	10	100	0	52	80	0	0	19	0.71
3500572--3500600	7	4.1	7	100	0	58	27	0	13	58	1.36
3500678--3500734	25	2.3	24	84	3	78	40	14	1	43	1.55
3502860--3502905	4	11.5	4	95	0	83	28	0	21	50	1.49
3505067--3505106	17	2.3	17	86	4	53	70	15	2	12	1.28
3505078--3505113	17	2.1	17	89	0	54	75	11	8	5	1.19
3505093--3505137	23	2.0	23	81	0	54	71	15	6	6	1.29
3509309--3509359	26	2.0	25	85	7	68	70	9	1	17	1.24
3515829--3515866	3	12.7	3	88	0	58	36	2	31	28	1.71
3518693--3518748	21	2.7	21	71	0	58	32	19	7	41	1.79
3519366--3519415	26	1.9	26	91	0	82	40	14	0	46	1.44
3520309--3520366	24	2.6	22	80	17	66	67	3	8	20	1.33
3526932--3526984	24	2.3	23	74	6	54	3	5	20	69	1.25
3528286--3528321	16	2.3	15	95	4	63	22	0	8	69	1.15
3528632--3528726	6	15.0	6	83	14	95	1	2	17	78	0.90
3528633--3528730	7	14.1	7	80	10	87	1	2	17	79	0.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3528629--3528730	13	7.9	13	75	14	95	0	1	18	78	0.90
3528611--3528708	44	2.3	42	81	8	108	3	3	16	77	1.02
3528886--3529415	126	4.2	125	79	4	512	33	14	17	33	1.90
3529712--3529739	9	3.1	9	100	0	56	0	10	0	89	0.49
3531377--3531410	17	1.9	18	94	5	61	0	17	2	79	0.86
3531375--3531410	10	4.0	9	86	13	56	0	19	2	77	0.88
3534168--3534482	171	1.8	171	85	4	438	25	24	10	39	1.87
3534472--3534498	14	1.9	14	100	0	54	29	22	3	44	1.70
3540949--3540992	20	2.3	19	88	4	61	25	0	2	72	0.96
3540960--3541003	19	2.3	20	84	7	56	31	0	4	63	1.14
3540973--3541005	13	2.4	14	90	10	50	27	0	6	66	1.15
3541564--3541664	20	4.9	20	71	4	69	44	38	1	14	1.57
3541651--3541701	20	2.8	18	83	13	68	45	35	0	19	1.51
3541653--3541722	32	2.2	30	82	9	86	44	31	1	22	1.62
3541570--3541706	7	20.9	7	65	24	50	43	37	1	17	1.58
3542885--3542929	18	2.5	18	85	7	56	28	4	0	66	1.11
3542869--3542925	24	2.4	24	87	0	87	29	10	0	59	1.31
3543385--3543422	18	2.1	19	85	5	51	47	2	0	50	1.15
3544297--3544334	17	2.2	17	90	9	60	15	13	0	71	1.16
3546731--3547123	195	2.0	197	89	4	607	36	11	14	37	1.82
3548449--3548507	29	2.0	29	100	0	118	32	16	20	30	1.95
3550960--3550993	2	17.0	2	100	0	68	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3550975--3551201	111	2.0	112	93	0	393	36	10	14	38	1.80
3556378--3556424	23	2.0	23	83	0	58	34	2	29	34	1.70
3556438--3556481	19	2.4	19	84	3	54	77	0	9	13	0.99
3556974--3557222	129	1.9	128	82	4	313	46	7	6	39	1.58
3563383--3563425	22	2.0	22	85	0	59	39	4	16	39	1.69
3564675--3564719	19	2.4	19	84	0	63	55	13	4	26	1.57
3564735--3564785	2	26.5	2	80	7	52	50	1	1	45	1.24
3564735--3564785	17	3.1	17	80	2	59	50	1	1	45	1.24
3566191--3566263	6	11.8	6	73	5	56	63	9	1	26	1.33
3566184--3566261	19	4.2	18	77	8	68	66	8	1	23	1.27
3572280--3572329	16	3.1	16	85	2	55	22	14	10	54	1.69
3572291--3572329	16	2.4	16	91	0	60	20	12	10	56	1.65
3575708--3575755	26	1.9	24	87	8	69	10	4	14	70	1.29
3578315--3578844	263	2.0	263	93	0	900	19	12	17	49	1.78
3583336--3583360	13	1.9	13	100	0	50	60	0	0	40	0.97
3583610--3583849	96	2.5	95	80	5	254	38	10	12	38	1.78
3583867--3583904	19	2.1	19	85	5	51	42	5	5	47	1.48
3596097--3596122	9	2.9	9	100	0	52	0	34	30	34	1.58
3603315--3603365	26	2.0	26	92	0	84	33	5	29	31	1.81
3605611--3605715	52	2.0	52	86	0	147	27	15	7	49	1.71
3606940--3606986	20	2.4	20	85	3	60	57	10	4	27	1.51
3619324--3619357	18	2.0	16	88	11	50	8	14	11	64	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3630607--3630913	43	6.7	42	75	17	236	27	10	14	47	1.77
3630605--3630851	51	5.1	50	78	16	286	26	8	14	50	1.72
3630605--3630895	94	3.1	94	89	3	422	27	9	14	48	1.74
3631937--3631983	9	4.9	9	76	23	51	19	0	4	76	0.95
3631930--3631982	26	2.0	26	88	0	79	18	0	5	75	0.99
3634120--3634157	19	2.0	19	94	0	67	44	5	2	47	1.39
3634922--3634966	21	2.1	21	84	8	56	57	22	13	6	1.59
3635675--3635699	13	1.9	13	100	0	50	32	8	0	60	1.26
3636159--3636319	21	7.5	21	64	29	65	54	13	5	27	1.61
3636152--3636361	59	3.4	59	71	18	199	53	13	4	27	1.60
3636192--3636278	36	2.4	36	84	5	113	54	11	5	28	1.59
3636152--3636431	129	2.2	129	96	1	519	53	13	5	28	1.60
3636369--3636410	21	2.0	21	85	0	57	52	7	7	33	1.56
3636323--3636445	35	3.5	34	81	9	149	54	12	4	28	1.58
3636425--3636461	14	2.6	14	91	4	56	56	8	5	29	1.51
3636447--3636503	24	2.4	24	79	5	71	56	8	5	29	1.52
3636479--3636556	19	3.9	19	77	11	68	51	10	6	32	1.61
3636782--3636831	9	5.6	9	75	17	50	78	0	6	16	0.95
3636774--3636831	20	3.2	18	76	11	55	77	0	8	13	0.98
3637834--3637899	6	11.0	6	77	6	62	63	7	1	27	1.30
3641684--3641779	3	32.7	3	74	8	81	34	7	1	57	1.33
3642172--3642205	10	3.4	10	83	0	50	11	2	23	61	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3642625--3642713	14	6.1	14	70	15	56	16	3	3	76	1.06
3642625--3642714	13	6.3	13	68	22	56	17	3	3	75	1.08
3642777--3642828	27	1.9	27	92	0	86	59	11	0	28	1.32
3643155--3643191	18	2.1	18	94	0	65	27	21	10	40	1.86
3651988--3652263	115	2.4	116	83	0	338	18	19	15	45	1.85
3653147--3653192	10	4.6	10	84	10	67	17	2	17	63	1.42
3653666--3653703	18	2.1	18	90	9	60	21	0	2	76	0.91
3653760--3653812	27	2.0	27	96	0	97	62	9	0	28	1.26
3653842--3653872	15	2.1	15	100	0	62	87	0	6	6	0.68
3654425--3654519	32	3.0	32	93	0	163	28	31	7	32	1.85

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106