genome.fa.s57.2.7.7.80.10.50.1000.24.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167882.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_15, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22478863

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   

This is table  24  of  106  ( 12717 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4345143--4345174	2	16.0	2	100	0	64	50	0	0	50	1.00
4345159--4345331	86	2.0	86	97	0	328	37	23	5	33	1.79
4345323--4345360	18	2.1	18	90	0	58	10	7	23	57	1.58
4345512--4345549	16	2.4	16	90	0	58	31	0	7	60	1.25
4345500--4345547	25	1.9	25	87	8	71	31	0	8	60	1.26
4346088--4346321	23	10.5	23	69	23	162	43	0	1	54	1.13
4346099--4346143	13	3.5	13	85	8	58	44	0	4	51	1.21
4346104--4346326	41	5.2	40	75	19	193	43	0	1	53	1.14
4346087--4346304	18	13.2	17	72	20	153	43	0	1	54	1.14
4346087--4346321	67	3.6	64	76	14	230	43	0	1	54	1.13
4346085--4346313	82	2.6	85	75	15	220	43	0	1	54	1.14
4346172--4346324	49	3.0	49	84	14	181	43	0	0	55	1.09
4346640--4346693	25	2.2	25	83	6	65	38	7	11	42	1.68
4346651--4346707	25	2.2	25	87	6	78	42	3	12	42	1.59
4355929--4355953	11	2.3	11	100	0	50	60	0	8	32	1.26
4363913--4364209	40	7.4	40	79	6	246	28	11	15	43	1.82
4363914--4364212	80	3.8	78	77	8	291	28	11	15	44	1.82
4363912--4364228	120	2.6	121	75	8	308	27	12	15	44	1.83
4364519--4364558	20	2.0	20	90	0	62	17	12	0	70	1.18
4366139--4366241	51	2.0	51	100	0	206	39	15	17	27	1.90
4369479--4369557	33	2.4	33	95	0	149	22	32	7	36	1.83
4372428--4372453	6	4.3	6	100	0	52	19	0	34	46	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4377066--4377108	18	2.4	18	92	0	68	48	6	23	20	1.73
4380436--4381289	462	1.9	454	81	8	1041	24	22	12	40	1.89
4383660--4383694	16	2.1	17	89	5	54	25	5	8	60	1.49
4389191--4389225	5	7.0	5	96	0	61	42	0	40	17	1.49
4389385--4389450	5	13.2	5	93	0	114	42	0	36	21	1.53
4391362--4391434	31	2.4	31	83	4	94	24	24	21	28	1.99
4391496--4391540	19	2.4	19	88	0	63	22	31	22	24	1.99
4391760--4391802	5	8.6	5	85	10	61	20	44	34	0	1.52
4391760--4391814	15	3.5	15	85	9	67	20	43	34	1	1.62
4391831--4391891	17	3.6	17	75	4	61	11	3	8	77	1.11
4391897--4392495	156	3.8	156	96	1	1063	29	14	18	38	1.89
4396172--4396210	8	4.9	8	93	0	69	74	0	15	10	1.07
4397401--4398336	40	23.0	40	90	5	1318	22	17	22	38	1.94
4397401--4398336	81	11.5	81	93	3	1410	22	17	22	38	1.94
4398346--4398443	9	10.6	9	82	11	92	84	9	0	6	0.77
4398343--4398443	41	2.6	39	81	10	125	84	9	0	5	0.78
4398344--4398436	1	93.0	1	75	0	69	86	8	0	5	0.72
4399223--4399295	31	2.4	31	86	4	103	23	26	23	27	2.00
4399621--4399648	5	5.6	5	100	0	56	17	42	39	0	1.50
4399766--4400362	156	3.8	156	95	2	1020	28	14	18	38	1.90
4403124--4403171	10	4.8	10	84	7	53	33	2	20	43	1.64
4403124--4403171	20	2.4	20	82	0	60	33	2	20	43	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4404817--4404889	37	2.0	37	94	0	128	19	16	13	50	1.77
4427946--4428002	27	2.1	27	100	0	114	42	7	21	29	1.79
4428843--4429151	153	2.0	153	91	3	496	23	17	20	38	1.93
4429890--4429919	12	2.5	12	94	0	51	6	3	0	90	0.56
4430794--4430864	26	2.8	25	81	8	90	47	0	2	49	1.16
4430828--4430867	15	2.6	16	84	4	55	50	0	2	47	1.14
4430851--4430925	17	4.1	19	71	16	68	57	0	1	41	1.07
4430892--4430937	16	2.6	18	83	10	51	65	2	2	30	1.16
4430994--4431060	11	6.4	11	76	22	63	46	0	1	52	1.09
4430955--4431083	37	3.4	38	73	13	99	42	0	3	54	1.16
4431047--4431093	22	2.1	22	84	0	58	36	4	4	55	1.39
4432772--4432826	23	2.4	23	87	0	74	45	1	3	49	1.30
4432808--4432844	18	2.1	18	89	0	56	48	2	0	48	1.15
4447112--4447158	17	2.9	16	87	3	58	31	12	4	51	1.59
4447113--4447158	16	2.8	17	86	3	58	32	13	4	50	1.61
4449226--4449255	2	15.0	2	100	0	60	50	0	0	50	1.00
4454239--4454671	216	2.0	212	79	6	462	33	10	11	43	1.76
4454461--4455207	236	3.2	234	81	4	805	32	9	11	46	1.72
4456289--4456332	23	1.9	23	100	0	88	34	11	4	50	1.59
4456541--4456628	36	2.4	36	86	0	131	10	13	11	64	1.49
4459693--4459721	13	2.3	13	94	5	51	27	0	13	58	1.36
4461766--4461809	15	3.2	14	84	12	56	34	2	0	63	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4466319--4466357	18	2.1	18	95	4	69	41	10	7	41	1.68
4467023--4467074	1	52.0	1	80	0	59	90	0	9	0	0.46
4467023--4467080	11	5.4	10	84	13	71	87	0	10	1	0.60
4467023--4467080	22	2.7	21	87	12	82	87	0	10	1	0.60
4491271--4491310	20	2.0	20	90	9	64	72	5	5	17	1.21
4491308--4491337	16	1.9	15	93	6	51	56	0	0	43	0.99
4491459--4491527	15	4.8	14	84	8	68	53	4	2	39	1.36
4499226--4499531	39	7.9	38	77	6	181	24	10	18	47	1.80
4499308--4499543	39	6.1	38	80	5	199	25	9	18	47	1.79
4499308--4499543	115	2.0	116	80	4	262	25	9	18	47	1.79
4500582--4500727	26	6.2	23	73	17	97	26	5	1	66	1.22
4500582--4500727	4	34.2	4	72	16	107	26	5	1	66	1.22
4500670--4500726	22	2.6	23	70	10	57	29	3	0	66	1.08
4512156--4512210	14	4.2	13	84	9	60	58	12	9	20	1.61
4512668--4513021	175	2.0	175	94	0	627	42	16	11	29	1.82
4523398--4523422	11	2.3	11	100	0	50	76	8	8	8	1.18
4523400--4523446	12	3.9	13	84	13	57	74	6	12	6	1.20
4531284--4531326	21	2.0	23	81	9	54	69	6	16	6	1.32
4532289--4532478	100	1.9	100	85	6	267	27	14	11	46	1.78
4532388--4532481	48	2.0	46	87	4	134	29	17	9	43	1.80
4533435--4533466	15	2.1	15	94	0	55	50	25	3	21	1.64
4538561--4538601	16	2.5	17	88	4	57	21	12	9	56	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4538667--4538700	12	2.8	12	90	0	50	41	0	17	41	1.50
4541767--4541797	2	15.5	2	100	0	62	51	0	0	48	1.00
4543468--4543667	105	1.9	105	91	0	328	39	15	12	33	1.84
4548758--4548783	13	2.0	13	100	0	52	38	0	0	61	0.96
4554499--4554538	21	1.9	21	89	0	62	7	0	15	77	0.98
4555883--4555920	18	2.1	18	85	9	51	76	0	13	10	1.02
4557458--4557500	21	2.0	21	86	0	59	39	0	0	60	0.97
4559491--4559548	27	2.1	27	81	12	66	72	3	18	5	1.18
4559621--4559662	11	3.8	11	81	12	59	21	19	2	57	1.52
4560316--4560367	26	2.0	26	88	0	77	51	13	1	32	1.52
4560572--4560700	7	19.3	7	71	13	51	45	32	0	20	1.57
4560566--4560700	20	6.8	20	71	16	84	45	32	0	20	1.57
4560577--4560694	13	8.9	13	73	11	71	45	31	0	22	1.58
4560586--4560682	27	3.6	27	79	6	99	46	29	1	22	1.59
4560678--4560743	26	2.6	25	77	11	62	42	39	0	18	1.50
4561172--4561218	9	5.8	9	80	14	50	89	0	10	0	0.49
4561183--4561215	5	6.8	5	86	6	50	87	0	12	0	0.53
4561172--4561218	10	4.6	10	80	15	60	89	0	10	0	0.49
4561172--4561231	22	2.8	22	87	7	79	85	0	13	1	0.69
4561172--4561219	15	3.0	17	79	14	66	87	0	12	0	0.54
4562904--4562999	35	2.7	35	75	0	102	35	23	5	35	1.78
4563028--4563170	72	2.0	72	81	2	171	34	21	9	33	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4563156--4563292	70	2.0	70	92	0	229	31	26	10	32	1.89
4565022--4565072	9	5.6	9	76	19	52	78	0	13	7	0.96
4565692--4565744	16	3.4	16	75	12	56	79	0	13	7	0.93
4566184--4566225	20	2.2	20	87	12	61	69	0	28	2	1.01
4566663--4566719	1	57.0	1	75	0	51	87	0	8	3	0.64
4566663--4566723	10	6.3	9	85	10	68	86	0	9	3	0.67
4571213--4571289	38	2.2	33	73	20	82	31	6	18	44	1.75
4577453--4577624	91	1.9	91	96	0	317	31	11	23	33	1.90
4582803--4583239	161	2.7	160	79	7	404	41	16	10	32	1.82
4589141--4590169	491	2.1	487	80	5	1158	36	12	12	39	1.80

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106