genome.fa.s57.2.7.7.80.10.50.1000.74.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167882.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_15, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22478863

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   

This is table  74  of  106  ( 12717 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14062280--14062332	23	2.3	23	77	6	54	49	0	0	50	1.00
14062467--14062508	19	2.2	20	86	4	59	47	0	0	52	1.00
14063860--14063889	5	6.0	5	100	0	60	60	0	0	40	0.97
14063928--14064002	29	2.7	28	83	6	89	52	0	0	48	1.00
14064081--14064124	22	2.0	22	86	0	61	54	4	0	40	1.21
14064033--14064114	40	2.1	38	80	13	87	52	3	0	43	1.18
14065064--14065105	11	3.8	11	81	9	50	71	0	0	28	0.86
14065917--14065961	18	2.7	16	83	16	56	75	2	0	22	0.91
14065902--14065961	27	2.2	26	80	11	68	73	1	1	23	1.01
14067933--14067986	11	5.1	11	76	15	51	68	0	0	31	0.90
14067934--14067986	15	3.7	16	80	14	55	69	0	0	30	0.88
14068766--14068816	14	3.6	14	77	15	52	72	1	1	23	1.05
14070923--14070996	26	2.9	26	78	13	82	41	1	9	47	1.44
14070923--14070993	25	2.8	25	80	8	81	43	1	9	45	1.46
14071305--14071409	48	2.2	49	81	8	128	59	7	8	24	1.53
14071394--14071420	13	2.1	13	100	0	54	85	0	0	14	0.61
14072414--14072485	33	2.2	33	85	5	101	30	2	29	37	1.72
14072664--14072722	31	2.0	29	86	6	82	38	23	11	25	1.89
14075259--14075308	16	3.1	16	77	11	57	34	4	0	62	1.14
14075286--14075449	81	2.0	81	91	4	269	40	3	4	51	1.39
14076161--14076201	16	2.4	18	80	8	50	53	0	2	43	1.13
14076174--14076236	26	2.5	27	80	12	71	53	0	3	42	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14076200--14076248	23	2.1	23	82	14	57	57	0	2	40	1.10
14083780--14083812	13	2.5	13	100	0	66	21	12	9	57	1.62
14085995--14086070	23	3.0	23	73	24	73	52	2	0	44	1.14
14090097--14090135	16	2.5	16	83	4	53	30	2	0	66	1.05
14105424--14105483	18	3.5	19	70	22	53	45	0	1	53	1.10
14105447--14105491	22	2.0	22	84	16	58	40	0	2	57	1.11
14107744--14107783	18	2.2	18	86	0	53	42	0	0	57	0.98
14108378--14108403	11	2.4	11	100	0	52	69	0	0	30	0.89
14123338--14123447	50	2.2	50	93	0	184	50	5	9	35	1.57
14124125--14124166	21	2.0	21	85	0	57	23	0	4	71	1.05
14124170--14124212	23	1.9	23	85	4	61	46	9	2	41	1.48
14125213--14125279	26	2.5	26	80	9	73	40	1	0	58	1.07
14126574--14126617	11	4.1	11	88	2	63	72	0	22	4	1.02
14126600--14126647	19	2.5	19	80	6	53	66	0	25	8	1.19
14127426--14127463	11	3.4	11	92	3	58	36	2	7	52	1.45
14127607--14127648	18	2.2	20	83	8	52	64	0	0	35	0.94
14127643--14127688	21	2.1	22	88	11	69	52	6	0	41	1.27
14128038--14128078	17	2.5	17	77	18	50	58	0	0	41	0.98
14131253--14131336	28	3.0	28	100	0	168	35	7	10	46	1.66
14131257--14131331	14	5.4	14	71	23	68	38	8	9	44	1.66
14139048--14139107	27	2.4	23	83	13	66	43	16	8	31	1.78
14141243--14141291	21	2.4	20	78	15	55	53	0	2	44	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14145503--14145546	20	2.2	20	84	8	54	4	6	6	81	0.97
14146315--14146343	14	2.0	15	93	6	51	68	0	0	31	0.89
14146798--14146863	22	2.8	24	88	9	91	31	0	0	68	0.90
14146802--14146860	16	3.8	16	77	8	59	30	0	0	69	0.89
14151667--14151698	16	2.0	16	100	0	64	50	18	6	25	1.70
14157426--14157473	23	2.0	24	84	4	62	47	0	2	50	1.12
14158510--14158549	6	7.2	6	83	11	50	45	0	2	52	1.14
14158492--14158548	11	5.1	11	73	10	53	47	3	3	45	1.37
14159069--14159107	6	6.5	6	96	0	60	53	0	35	10	1.35
14159073--14159111	6	6.5	6	96	0	51	58	0	33	7	1.26
14159073--14159111	12	3.2	12	92	0	60	58	0	33	7	1.26
14168805--14168861	25	2.4	25	85	5	73	42	17	26	14	1.87
14169085--14169128	22	2.0	22	90	0	70	40	9	13	36	1.76
14172454--14172486	15	2.2	15	94	0	57	18	12	39	30	1.87
14173230--14173278	25	2.0	24	88	4	71	28	34	8	28	1.86
14175208--14175842	316	2.0	313	89	1	966	36	13	9	40	1.76
14176116--14176165	20	2.4	21	83	6	66	60	14	2	24	1.45
14176241--14176271	11	2.8	11	100	0	62	54	0	0	45	0.99
14180244--14180276	15	2.3	15	89	5	50	39	3	0	57	1.14
14181399--14181595	61	3.3	60	73	11	154	32	14	8	44	1.74
14182064--14182192	66	2.0	66	79	3	143	39	13	4	42	1.64
14182027--14182578	238	2.3	241	79	8	563	36	14	8	40	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14183750--14183808	31	1.9	31	86	13	86	45	8	0	45	1.33
14185221--14185263	17	2.6	16	85	7	50	6	11	13	67	1.41
14187236--14187323	43	2.0	43	97	0	167	32	14	22	29	1.94
14206556--14206615	14	4.5	13	78	14	68	58	1	0	40	1.08
14214325--14214374	15	3.5	15	74	23	54	38	0	2	60	1.09
14214335--14214387	26	2.1	26	82	10	65	43	0	0	56	0.99
14219048--14219077	14	2.1	14	100	0	60	26	16	6	50	1.70
14226985--14227025	22	1.9	21	85	5	55	58	2	4	34	1.32
14227820--14227844	12	2.1	12	100	0	50	48	0	0	52	1.00
14228057--14228112	26	2.2	26	87	6	78	50	3	0	46	1.19
14228178--14228261	44	1.9	44	92	0	141	29	9	14	46	1.76
14231815--14231850	17	2.1	18	89	5	56	38	5	0	55	1.23
14234290--14234327	19	2.0	19	89	0	58	68	10	5	15	1.36
14234407--14234465	27	2.1	27	84	3	73	55	0	3	40	1.16
14239742--14239785	21	2.1	21	91	0	70	11	13	4	70	1.31
14240608--14240643	18	2.0	19	89	10	58	52	11	8	27	1.65
14240657--14240742	19	4.6	19	71	10	70	41	9	18	30	1.82
14240657--14240738	28	2.9	29	78	12	100	41	8	18	31	1.80
14240741--14240780	18	2.2	18	86	0	53	52	7	7	32	1.58
14240793--14240826	17	2.0	17	94	0	59	29	14	17	38	1.90
14240847--14240883	18	2.1	18	95	5	67	40	5	21	32	1.76
14240965--14241019	18	3.0	18	94	2	92	50	16	10	21	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14241033--14241103	8	8.1	8	76	14	61	45	12	12	29	1.79
14241028--14241103	28	2.8	28	82	8	93	44	11	11	31	1.77
14241028--14241122	26	3.5	28	81	8	99	43	11	12	32	1.79
14241349--14241594	43	5.7	43	72	11	180	45	13	11	29	1.79
14241346--14241594	86	2.9	84	74	8	223	45	14	11	29	1.79
14243351--14243390	17	2.5	16	88	8	55	10	15	0	75	1.05
14245963--14246098	61	2.2	60	87	3	193	39	10	18	31	1.84
14248404--14248438	2	17.5	2	93	0	61	48	2	0	48	1.16
14260154--14260184	2	16.0	2	93	6	55	51	0	0	48	1.00
14260156--14260184	15	1.9	15	100	0	58	51	0	0	48	1.00
14262033--14262173	71	2.0	71	88	0	210	34	21	4	38	1.76
14263767--14263805	2	21.5	2	80	19	50	48	0	0	51	1.00
14263769--14263805	14	2.6	14	91	4	56	48	0	0	51	1.00
14264001--14264154	82	1.9	82	85	5	204	42	21	12	24	1.87
14264333--14264374	22	1.9	22	95	0	75	33	14	9	42	1.78
14264504--14264539	15	2.3	17	81	18	51	72	2	0	25	0.98
14267133--14267178	20	2.2	21	84	3	58	47	0	0	52	1.00
14280964--14281015	21	2.4	21	96	3	95	44	9	3	42	1.55
14297755--14297830	30	2.5	30	84	0	89	47	3	3	44	1.40
14305051--14305098	14	3.2	14	80	13	51	35	2	2	60	1.20
14305152--14305196	20	2.2	20	88	7	65	66	0	2	31	1.04
14310970--14310999	2	15.0	2	100	0	60	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14311007--14311051	21	2.1	21	91	0	72	33	24	11	31	1.90
14317007--14317041	2	17.5	2	100	0	70	48	0	0	51	1.00
14317126--14317168	21	2.0	21	82	8	52	25	0	2	72	0.97
14318024--14318074	14	3.6	14	80	15	61	27	0	3	68	1.07
14318110--14318134	9	2.8	9	100	0	50	68	0	12	20	1.21
14323698--14323842	24	6.2	24	80	4	152	42	4	15	37	1.66
14323717--14323848	69	1.9	69	90	0	210	42	4	15	37	1.68
14324407--14324492	30	2.8	31	82	3	111	41	10	10	37	1.74
14324515--14324548	17	1.9	18	94	5	61	41	5	11	41	1.66
14324515--14324558	17	2.5	17	81	3	52	45	6	11	36	1.67

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106