genome.fa.s57.2.7.7.80.10.50.1000.26.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167882.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_15, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22478863

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   

This is table  26  of  106  ( 12717 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4757304--4757349	6	8.2	6	81	13	53	82	0	17	0	0.67
4757301--4757346	18	2.9	15	84	15	65	84	0	15	0	0.62
4757432--4757473	23	1.9	23	90	9	70	59	16	16	7	1.58
4757474--4757500	5	5.4	5	100	0	54	81	0	18	0	0.69
4759298--4759367	32	2.2	32	84	5	88	37	17	14	31	1.89
4759330--4759483	65	2.4	65	76	16	158	33	18	16	31	1.93
4760215--4760256	19	2.3	18	83	4	57	66	0	0	33	0.92
4760213--4760254	22	2.0	20	86	9	57	64	0	0	35	0.94
4760323--4760347	3	8.3	3	100	0	50	68	0	0	32	0.90
4761209--4761252	13	3.5	13	76	17	56	68	6	18	6	1.35
4761203--4761264	25	2.5	25	97	2	117	70	6	14	8	1.30
4761222--4761266	12	3.7	12	77	16	56	73	6	13	6	1.24
4767413--4767439	3	9.0	3	100	0	54	33	0	0	66	0.92
4768928--4769020	35	2.5	37	79	11	102	33	11	19	35	1.88
4768938--4769045	38	2.9	37	80	4	121	31	10	21	37	1.87
4769444--4769486	19	2.3	19	92	4	70	9	13	0	76	1.01
4770115--4770155	18	2.3	18	91	4	66	14	4	2	78	1.03
4771175--4771224	26	1.9	26	88	8	75	8	0	44	48	1.32
4771185--4771221	19	2.0	19	94	5	67	8	0	43	48	1.32
4771184--4771330	7	22.7	7	69	18	79	17	1	39	42	1.57
4771180--4771231	25	2.1	25	82	7	61	9	0	44	46	1.36
4771264--4771327	26	2.4	27	82	12	80	17	0	37	45	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4771277--4771324	12	3.8	12	76	10	51	14	0	37	47	1.44
4772367--4772400	13	2.7	12	86	13	50	0	11	0	88	0.52
4772584--4772643	29	2.1	29	90	6	95	31	20	15	33	1.93
4773460--4773505	20	2.3	20	88	7	67	17	8	19	54	1.68
4773471--4773505	10	3.5	10	92	0	61	14	8	20	57	1.63
4776800--4776867	33	2.1	33	97	0	127	35	19	10	35	1.85
4780498--4780653	75	2.1	74	79	10	165	34	13	14	37	1.86
4781175--4781240	21	3.1	21	82	0	87	19	27	10	42	1.84
4781833--4783408	160	9.9	160	79	5	1432	43	16	8	31	1.79
4782150--4783089	162	6.0	149	74	9	565	42	16	9	31	1.81
4782459--4783408	162	5.9	161	82	2	1007	42	16	8	32	1.78
4781837--4783408	318	4.9	319	81	6	1289	43	16	8	31	1.79
4784455--4784491	13	2.8	13	87	0	56	59	5	5	29	1.42
4796269--4796295	6	4.5	6	100	0	54	70	0	0	29	0.88
4798122--4798146	7	3.6	7	100	0	50	12	0	0	88	0.53
4801623--4801651	2	14.5	2	100	0	58	51	0	48	0	1.00
4802630--4802659	8	3.8	8	95	0	51	43	0	56	0	0.99
4804330--4804359	2	15.0	2	100	0	60	50	0	0	50	1.00
4806222--4806246	13	1.9	13	100	0	50	44	0	8	48	1.32
4806630--4806669	20	2.0	20	85	0	53	57	2	2	37	1.26
4806711--4806771	27	2.3	27	83	11	72	40	0	3	55	1.16
4806768--4806800	17	2.0	17	88	5	50	63	0	0	36	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4806784--4806832	26	1.9	25	95	4	89	48	0	2	48	1.12
4818063--4818199	54	2.6	53	84	4	168	28	15	9	46	1.77
4818082--4818205	54	2.3	54	87	2	169	28	12	11	47	1.76
4819101--4819169	33	2.1	31	89	7	102	11	14	5	68	1.38
4822667--4822715	24	2.0	24	88	0	71	38	24	6	30	1.80
4832938--4833540	299	2.0	299	99	0	1197	28	11	12	47	1.75
4838871--4838926	28	2.1	26	83	12	69	37	5	3	53	1.41
4839540--4839586	8	5.8	8	78	11	51	40	2	0	57	1.11
4839572--4839623	21	2.5	21	93	6	88	50	0	0	50	1.00
4842160--4842211	24	2.2	23	83	13	61	71	5	1	21	1.17
4842555--4842620	33	2.0	33	91	5	107	48	3	10	37	1.53
4846184--4846246	32	2.0	30	82	11	74	4	41	0	53	1.22
4850266--4850327	27	2.4	25	80	15	72	19	11	12	56	1.66
4852698--4852741	18	2.6	17	86	10	63	47	22	2	27	1.63
4852650--4852765	59	2.0	59	91	0	187	49	18	6	25	1.71
4853310--4853356	17	2.8	17	83	3	60	57	6	10	25	1.56
4854578--4854616	18	2.1	19	85	4	53	82	2	15	0	0.79
4860498--4860530	16	2.0	17	88	5	50	42	0	0	57	0.98
4862553--4862599	25	1.9	24	95	4	85	25	2	8	63	1.34
4864037--4864076	20	2.0	20	85	0	53	40	7	37	15	1.75
4867572--4867599	5	5.6	5	100	0	56	60	21	17	0	1.36
4868260--4868298	14	2.8	13	85	11	51	56	0	0	43	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4869129--4869188	24	2.5	24	72	2	57	40	1	1	56	1.19
4873240--4873273	15	2.3	15	89	0	50	61	8	0	29	1.26
4873641--4873688	3	16.0	3	100	0	96	33	0	0	66	0.92
4885811--4885872	25	2.4	26	81	5	72	17	24	17	40	1.91
4885889--4885960	9	8.0	9	76	11	58	23	2	1	72	1.06
4885889--4885960	6	12.0	6	77	11	58	23	2	1	72	1.06
4885896--4885960	32	2.1	31	88	8	96	23	3	0	73	0.97
4885890--4885960	26	2.8	25	81	6	81	22	2	1	73	1.05
4885884--4885963	38	2.1	37	81	6	90	21	3	1	73	1.06
4885912--4885962	15	3.3	15	76	17	59	19	1	0	78	0.85
4885890--4885960	29	2.3	32	88	9	105	22	2	1	73	1.05
4886792--4886848	5	11.0	5	83	7	69	19	1	1	77	0.95
4889169--4889226	12	4.7	13	72	25	54	1	22	0	75	0.89
4890749--4890779	14	2.2	14	94	0	53	77	0	3	19	0.90
4893386--4894715	665	2.0	665	99	0	2651	36	19	18	25	1.95
4898027--4898070	22	2.0	22	90	0	70	43	9	9	38	1.68
4901838--4901881	22	2.0	22	90	0	70	43	11	11	34	1.77
4918531--4918612	16	5.2	16	72	19	55	30	6	2	60	1.33
4918537--4918618	31	2.6	31	88	1	119	31	4	2	60	1.30
4919227--4919263	12	3.2	12	85	11	51	43	0	0	56	0.99
4919234--4919316	34	2.5	34	79	11	93	36	1	0	62	1.03
4925481--4925510	5	5.8	5	96	4	51	63	36	0	0	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4934609--4934835	122	1.9	123	80	8	275	40	10	11	38	1.75
4940852--4940897	8	5.8	8	86	0	65	39	0	0	60	0.97
4940849--4940897	24	2.0	24	92	0	80	40	0	0	59	0.98
4940860--4940902	16	2.8	16	89	6	63	44	0	0	55	0.99
4964835--4964875	8	5.2	8	85	2	57	41	0	0	58	0.98
4964860--4964912	21	2.4	22	81	6	72	49	0	1	49	1.12
4968063--4968094	14	2.4	14	94	5	57	37	9	6	46	1.61
4968101--4968143	22	2.0	22	85	0	59	44	6	4	44	1.52
4968406--4968463	25	2.3	25	84	0	80	22	22	15	39	1.91
4982502--4982552	20	2.6	19	82	11	68	47	0	1	50	1.12
4982502--4982551	21	2.5	21	87	6	77	48	0	2	50	1.12
4985599--4985626	14	2.0	14	100	0	56	28	7	14	50	1.69
4990567--4990817	63	4.0	63	70	15	180	34	13	12	39	1.83
4997805--4998029	116	1.9	116	98	0	432	38	18	20	22	1.93
4998949--4998988	20	2.0	20	90	4	64	32	0	7	60	1.25
4999212--4999260	25	1.9	26	91	4	82	46	2	10	40	1.49
5003044--5003168	18	6.9	18	73	13	105	31	35	5	28	1.80
5003048--5003090	21	2.0	21	95	0	77	25	44	2	27	1.66
5013569--5013606	16	2.5	15	84	16	51	0	7	5	86	0.69
5018002--5018071	12	5.7	12	72	16	54	2	7	7	82	0.92
5018010--5018080	30	2.6	27	79	16	83	2	7	7	83	0.91
5018016--5018080	26	2.7	23	80	13	69	3	7	6	83	0.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5018023--5018080	25	2.3	26	87	3	82	3	6	6	82	0.93
5018042--5018080	18	2.2	18	90	0	60	0	7	7	84	0.77
5019067--5019591	264	2.0	264	94	0	924	18	32	24	24	1.97
5022122--5022164	17	2.5	17	92	0	68	27	11	41	18	1.85
5022133--5022173	17	2.4	17	87	0	55	36	14	36	12	1.84
5022590--5022626	19	2.0	18	89	5	56	0	24	2	72	0.97
5026247--5026312	25	2.7	25	81	9	66	9	10	1	78	1.02
5026253--5026306	21	2.5	20	80	11	54	7	9	1	81	0.94
5028223--5028253	16	1.9	16	93	0	53	38	19	6	35	1.77
5030288--5030325	3	12.3	3	84	15	51	31	0	0	68	0.90

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106