genome.fa.s57.2.7.7.80.10.50.1000.75.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167882.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_15, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22478863

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   

This is table  75  of  106  ( 12717 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14325682--14325847	61	2.7	61	85	5	228	33	12	5	48	1.64
14325851--14325884	15	2.2	15	89	5	50	32	0	2	64	1.08
14325785--14325927	72	2.0	73	88	4	218	37	8	4	49	1.52
14327159--14327356	55	3.6	55	93	2	301	31	5	30	31	1.81
14327976--14328151	41	4.2	41	76	5	131	42	19	17	21	1.90
14327975--14328130	84	1.9	82	85	2	213	41	18	17	22	1.90
14327976--14328150	84	2.1	83	82	2	208	42	19	17	21	1.89
14328582--14329018	21	20.0	21	76	11	122	38	13	7	41	1.72
14328680--14329043	89	4.1	88	86	7	431	37	13	7	40	1.73
14328595--14329017	196	2.2	198	84	6	540	38	13	7	41	1.73
14328682--14329054	68	5.6	65	77	13	209	38	13	7	41	1.73
14332575--14332673	9	10.7	9	78	19	98	10	13	0	76	1.01
14332555--14332673	28	4.3	27	73	18	93	9	14	0	76	1.01
14332553--14332652	20	5.3	19	75	21	86	9	13	0	78	0.97
14332575--14332655	36	2.2	36	85	12	121	11	12	0	76	1.02
14332559--14332655	44	2.2	45	85	14	132	10	14	0	75	1.05
14332618--14332652	11	3.4	11	92	7	56	8	8	0	82	0.83
14332580--14332678	20	5.2	19	76	20	91	12	14	0	73	1.09
14332553--14332642	9	10.6	8	76	13	58	8	13	0	77	0.98
14332618--14332679	23	2.8	23	81	11	60	11	14	0	74	1.08
14333060--14333089	13	2.3	13	94	0	51	3	23	0	73	0.98
14334965--14334998	17	2.0	17	88	11	52	35	5	17	41	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14336619--14336888	59	4.6	59	84	6	336	39	10	4	45	1.58
14336618--14336890	119	2.3	119	86	4	383	39	10	4	45	1.59
14336824--14336864	16	2.4	17	84	15	50	51	2	2	43	1.28
14336892--14336928	15	2.4	15	90	4	56	35	0	2	62	1.10
14336840--14336984	72	2.0	74	85	8	199	38	8	3	49	1.50
14337058--14337110	3	17.7	3	84	7	72	62	0	3	33	1.13
14339010--14339045	19	1.9	18	88	5	54	38	11	16	33	1.84
14339469--14339517	16	3.2	16	91	5	75	22	0	8	69	1.14
14339460--14339517	16	3.9	16	82	8	70	20	0	10	68	1.18
14339559--14339601	21	2.0	22	90	4	70	67	0	0	32	0.91
14339937--14339969	5	6.6	5	86	13	50	81	0	0	18	0.68
14341571--14341627	28	2.0	29	96	3	107	57	17	3	21	1.54
14343990--14344014	12	2.1	12	100	0	50	44	32	8	16	1.76
14344193--14344217	2	12.5	2	100	0	50	48	0	0	52	1.00
14347115--14347187	36	2.0	36	92	5	121	35	15	28	20	1.93
14347449--14347477	13	2.1	14	93	6	51	86	0	0	13	0.58
14347511--14347633	61	2.0	61	98	0	237	41	3	19	35	1.68
14348247--14348290	12	3.7	12	81	0	61	18	0	4	77	0.94
14348356--14348406	25	2.0	26	88	7	79	50	3	5	39	1.45
14348356--14348419	25	2.5	25	82	7	76	46	3	9	40	1.52
14355046--14355083	13	2.8	13	88	4	58	81	0	10	7	0.87
14356482--14356563	43	1.9	42	90	7	130	37	10	15	35	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14356860--14357090	83	2.8	82	83	5	261	25	12	19	41	1.87
14356872--14357306	41	10.6	41	77	9	327	23	16	17	41	1.89
14358232--14358270	12	3.2	12	81	0	51	17	0	5	76	0.96
14359532--14359658	57	2.2	57	84	6	175	34	11	12	41	1.78
14365184--14365288	55	1.9	55	82	3	131	33	20	18	27	1.96
14368640--14368703	8	7.8	8	91	3	92	35	1	0	62	1.05
14368782--14368807	9	2.9	9	100	0	52	65	0	0	34	0.93
14368918--14368958	16	2.6	16	88	3	57	51	0	0	48	1.00
14374263--14374374	54	2.1	54	96	0	206	31	23	14	31	1.94
14377640--14377683	11	3.8	11	82	11	52	38	6	0	54	1.27
14377654--14377678	13	1.9	13	100	0	50	36	8	0	56	1.29
14377784--14377837	28	1.9	27	82	14	65	31	1	1	64	1.14
14384989--14385027	20	2.0	20	84	0	51	56	0	5	38	1.22
14385110--14385148	20	2.0	20	89	0	60	51	12	7	28	1.67
14386372--14386413	15	2.8	15	88	0	66	57	0	0	42	0.99
14387521--14387545	12	2.1	12	100	0	50	72	0	0	28	0.86
14395582--14395646	28	2.3	28	81	5	69	61	0	3	35	1.12
14395631--14395664	17	1.9	18	88	5	52	79	0	11	8	0.94
14395632--14395683	25	2.0	25	85	3	68	78	1	13	5	1.01
14396406--14396440	16	2.2	16	89	0	52	71	5	2	20	1.19
14396780--14396811	16	2.1	16	94	5	57	78	0	9	12	0.97
14398409--14398459	19	2.7	18	84	6	57	76	3	19	0	0.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14398411--14398459	26	1.9	25	87	4	71	77	4	18	0	0.92
14401088--14401115	2	14.0	2	100	0	56	50	0	0	50	1.00
14403457--14403491	7	5.0	7	89	0	52	28	0	28	42	1.56
14405606--14405795	95	2.0	95	98	0	371	36	5	25	32	1.78
14409284--14409317	2	17.0	2	100	0	68	50	0	0	50	1.00
14411387--14411424	8	5.0	8	93	6	62	34	39	0	26	1.57
14411387--14411424	15	2.5	16	91	8	62	34	39	0	26	1.57
14415681--14415730	24	2.1	24	100	0	100	38	12	28	22	1.89
14425202--14425262	31	2.0	31	100	0	122	40	3	22	32	1.70
14433848--14433881	17	1.9	18	94	5	61	47	17	0	35	1.48
14433928--14433992	34	1.9	34	90	0	103	41	7	4	46	1.53
14435763--14435802	2	20.0	2	100	0	80	50	0	50	0	1.00
14441734--14441794	23	2.8	20	74	18	50	8	4	16	70	1.29
14443253--14443668	183	2.3	183	94	0	724	29	13	19	37	1.90
14447873--14447908	2	18.0	2	94	0	54	44	0	5	50	1.25
14450511--14450536	8	3.2	8	100	0	52	50	0	11	38	1.39
14453740--14453825	43	2.0	43	97	0	163	38	20	10	30	1.87
14459480--14459509	10	3.1	10	95	4	53	0	6	0	93	0.35
14459479--14459507	14	2.0	15	93	6	51	0	10	0	89	0.48
14461242--14461282	17	2.4	18	80	12	50	58	2	2	36	1.24
14461611--14461668	17	3.1	18	74	20	57	41	3	5	50	1.42
14461842--14461900	2	29.5	2	100	0	118	0	49	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14464568--14464718	45	3.4	45	90	0	230	35	8	24	31	1.86
14468236--14468285	21	2.3	23	79	10	59	40	0	0	60	0.97
14478443--14478553	56	1.9	58	89	3	172	50	9	8	32	1.63
14480741--14480810	17	3.9	17	75	14	52	38	4	0	57	1.19
14480688--14480853	79	2.1	77	84	5	210	36	8	1	53	1.42
14482648--14482700	15	3.5	15	82	14	65	77	0	9	13	0.99
14482659--14482720	29	2.1	29	87	3	88	79	1	8	11	1.01
14482597--14482699	14	7.2	14	71	16	52	70	1	11	15	1.24
14482993--14483032	19	2.0	21	85	9	57	27	5	0	67	1.11
14483060--14483179	58	2.1	56	89	6	181	27	2	15	55	1.53
14483275--14483326	25	2.1	25	85	7	70	46	5	1	46	1.38
14483279--14483343	25	2.6	25	81	11	64	52	4	1	41	1.31
14483585--14483769	95	1.9	95	90	0	289	49	10	11	28	1.72
14487047--14487098	18	2.8	18	94	2	86	26	5	13	53	1.62
14499093--14499131	2	19.5	2	100	0	78	51	0	0	48	1.00
14499768--14499851	36	2.4	35	84	9	102	15	20	46	17	1.84
14499965--14500040	27	3.0	25	73	7	64	19	2	59	18	1.50
14500411--14500435	1	25.0	1	100	0	50	0	0	100	0	0.00
14503037--14503077	21	2.0	21	85	0	55	48	4	2	43	1.37
14509644--14509720	30	2.6	29	87	4	118	50	0	3	45	1.20
14509984--14510180	82	2.4	82	85	7	251	45	4	8	42	1.52
14510025--14510202	82	2.2	82	84	2	232	49	3	7	38	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14511066--14511099	16	2.1	16	88	5	50	58	5	0	35	1.22
14519551--14519713	79	2.1	79	81	2	184	46	3	9	41	1.53
14519575--14519744	79	2.2	79	92	0	277	44	3	8	44	1.51
14522182--14522208	4	6.8	4	100	0	54	48	25	25	0	1.52
14525062--14525097	2	18.0	2	100	0	72	50	0	0	50	1.00
14538274--14538314	2	20.5	2	89	0	64	53	2	0	43	1.13
14540735--14540763	13	2.3	13	94	5	51	65	0	3	31	1.09
14540693--14540759	32	2.1	32	81	15	77	61	1	4	32	1.25
14544250--14544300	24	2.1	24	85	0	66	37	0	9	52	1.34
14545553--14545598	18	2.6	18	85	0	56	39	0	0	60	0.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106