genome.fa.s57.2.7.7.80.10.50.1000.32.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167882.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_15, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22478863

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   

This is table  32  of  106  ( 12717 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5973903--5973960	12	5.1	12	75	21	54	74	5	3	17	1.15
5973903--5973963	24	2.7	22	85	14	81	73	4	3	18	1.14
5973916--5973973	6	11.0	5	81	17	57	75	3	3	17	1.07
5976982--5977053	35	2.1	35	94	0	126	34	16	12	36	1.87
5978911--5978968	24	2.3	26	79	8	66	48	1	12	37	1.51
5987184--5987211	3	9.3	3	100	0	56	32	0	0	67	0.91
5987860--5987900	12	3.6	12	83	12	50	65	2	4	26	1.25
5988339--5988379	17	2.3	18	84	12	50	4	9	4	80	1.00
5989881--5989923	3	14.0	3	95	4	77	32	0	0	67	0.91
5993954--5994003	19	2.6	19	80	0	55	24	12	30	34	1.91
5994128--5994187	30	1.9	32	83	6	79	36	11	1	50	1.49
5995932--5995961	2	15.0	2	92	0	51	53	0	0	46	1.00
5995982--5996054	33	2.2	33	78	7	78	28	1	1	68	1.06
5995967--5996102	17	8.0	17	68	18	52	33	3	0	61	1.19
5997000--5997033	17	2.0	17	100	0	68	35	17	17	29	1.93
5997430--5997468	21	1.9	21	84	5	53	7	5	10	76	1.13
6001140--6001179	14	2.9	14	82	14	55	72	0	0	27	0.85
6002678--6002718	21	2.0	21	95	0	73	41	0	14	43	1.45
6003063--6003109	24	1.9	25	83	12	62	40	4	4	51	1.41
6003333--6003358	12	2.2	12	100	0	52	34	30	7	26	1.85
6007086--6007495	144	2.8	142	78	6	412	33	11	11	42	1.79
6008075--6008198	64	1.9	64	85	3	169	20	25	10	44	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6008143--6008239	42	2.3	42	90	0	149	18	22	10	48	1.78
6011349--6011485	70	2.0	70	98	0	265	34	19	18	27	1.96
6012168--6012226	30	2.0	30	96	0	109	33	27	13	25	1.93
6012070--6012290	120	1.8	120	97	1	417	30	19	18	31	1.96
6016896--6016955	6	10.0	6	80	7	59	80	6	3	10	1.01
6016896--6016955	17	3.3	18	88	6	86	80	6	3	10	1.01
6017745--6017806	10	6.1	10	74	14	56	80	1	1	16	0.87
6017757--6017803	8	6.0	8	78	12	53	82	0	2	14	0.75
6017833--6017881	24	2.0	24	100	0	98	57	0	24	18	1.41
6019224--6019418	84	2.3	84	93	0	329	39	20	12	28	1.88
6019354--6019579	99	2.2	99	82	4	272	32	22	11	33	1.91
6019521--6019622	40	2.5	40	85	4	123	37	19	9	33	1.85
6019626--6019874	132	1.9	126	82	4	300	37	17	12	32	1.87
6019999--6020129	41	3.2	41	85	0	154	32	24	12	30	1.92
6020367--6020405	14	2.7	15	84	4	53	76	0	20	2	0.90
6020586--6021103	105	4.9	104	80	4	558	35	17	13	33	1.89
6020607--6021084	209	2.3	209	81	4	550	35	17	13	33	1.88
6021027--6021186	83	1.9	83	83	5	207	35	10	15	38	1.82
6021838--6022241	146	2.8	140	75	10	352	34	14	10	40	1.80
6022647--6022685	18	2.2	18	86	13	55	71	0	23	5	1.05
6022955--6023001	22	2.2	21	81	7	58	21	19	14	44	1.86
6022960--6023002	22	2.0	22	90	0	68	23	20	11	44	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6033184--6033288	34	3.0	34	78	8	113	37	5	13	43	1.68
6034206--6034268	29	2.1	29	82	2	72	44	14	3	38	1.61
6034666--6034690	6	4.2	6	100	0	50	52	0	0	48	1.00
6036427--6036455	9	3.3	9	95	4	51	37	0	0	62	0.96
6036976--6037066	35	2.6	34	75	14	96	49	1	2	47	1.21
6037623--6037648	1	26.0	1	100	0	52	0	0	0	100	0.00
6040802--6040867	26	2.6	25	78	7	78	48	1	3	46	1.26
6040800--6040872	25	2.9	26	81	4	87	47	1	2	47	1.24
6040844--6040885	15	2.7	16	78	14	52	47	0	0	52	1.00
6040853--6040886	15	2.4	15	90	9	54	52	0	0	47	1.00
6040856--6041018	44	3.7	45	78	16	139	46	2	0	50	1.14
6040984--6041012	15	1.9	15	100	0	58	41	0	0	58	0.98
6040966--6041011	8	6.0	8	77	7	51	43	2	0	54	1.12
6040919--6041023	23	4.3	24	77	11	99	43	2	0	53	1.15
6040987--6041038	15	3.3	15	84	13	52	46	0	1	51	1.12
6040968--6041038	25	2.9	23	74	14	61	45	1	1	52	1.18
6041528--6041561	15	2.3	15	94	0	59	35	0	14	50	1.44
6041848--6041881	2	17.0	2	93	0	59	47	0	0	52	1.00
6047356--6047414	10	6.6	9	77	16	52	1	16	0	81	0.78
6048695--6048739	21	2.2	21	88	4	65	68	2	0	28	1.01
6050140--6050179	21	2.0	20	85	14	55	80	12	2	5	0.98
6060771--6061205	150	2.9	145	78	11	461	28	12	16	42	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6060766--6061205	101	4.4	100	80	5	423	28	12	16	41	1.85
6060766--6061206	49	8.9	49	78	9	385	28	12	16	41	1.85
6061179--6061305	52	2.4	52	82	2	166	30	14	14	40	1.86
6061459--6061500	14	3.0	15	80	16	54	0	28	0	71	0.86
6063811--6064428	160	3.8	159	79	6	618	32	9	14	43	1.78
6072715--6073250	279	1.9	279	82	3	668	30	19	17	31	1.95
6076459--6076496	19	2.0	19	100	0	76	42	42	0	15	1.47
6077605--6077709	52	2.0	52	87	3	149	26	19	7	46	1.76
6078320--6078372	27	2.0	27	88	0	79	43	3	1	50	1.30
6078709--6078743	18	2.0	18	94	5	63	42	0	5	51	1.25
6079932--6079995	28	2.3	28	81	5	76	43	1	1	53	1.19
6079967--6080000	16	2.2	16	89	5	52	52	0	0	47	1.00
6080220--6080269	26	1.9	26	83	0	64	52	0	4	44	1.20
6081696--6081721	1	26.0	1	100	0	52	0	0	100	0	0.00
6094822--6094916	49	2.0	49	85	2	129	49	9	15	25	1.75
6107085--6107124	10	4.1	10	84	15	57	82	7	2	7	0.92
6107093--6107129	18	2.0	19	94	5	67	86	5	2	5	0.78
6112651--6112701	25	2.0	25	84	0	66	35	13	13	37	1.85
6119227--6119264	6	6.0	6	90	9	58	47	21	0	31	1.51
6125386--6125417	4	8.0	4	92	0	55	71	0	3	25	1.00
6126414--6126473	16	3.7	16	74	17	61	75	1	8	15	1.12
6126724--6126978	49	5.2	48	71	5	129	43	15	12	28	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6128191--6128249	26	2.3	26	100	0	118	20	8	10	61	1.54
6139603--6140026	210	2.0	210	99	0	830	47	9	16	25	1.78
6142916--6142968	21	2.5	20	82	17	63	33	5	13	47	1.66
6143699--6143746	18	2.6	18	80	3	51	43	4	12	39	1.62
6144356--6144703	174	2.0	174	100	0	696	32	13	18	35	1.90
6145111--6145158	20	2.4	20	85	0	69	54	20	8	16	1.68
6145447--6145506	31	2.0	31	87	9	88	53	6	16	23	1.66
6147072--6147445	146	2.6	144	81	7	418	31	13	13	42	1.82
6147869--6147899	7	4.4	7	100	0	62	87	12	0	0	0.55
6149675--6149701	7	3.9	7	100	0	54	70	0	0	29	0.88
6151333--6151363	3	10.3	3	100	0	62	67	0	0	32	0.91
6158959--6158996	18	2.1	18	90	0	58	39	21	10	28	1.86
6163084--6163167	37	2.3	37	82	0	96	39	13	10	36	1.79
6163095--6163373	89	3.1	89	83	1	344	37	14	12	35	1.84
6163212--6163540	142	2.3	141	84	6	416	37	14	13	34	1.86
6163501--6163577	37	2.1	37	90	0	118	37	16	14	31	1.89
6163123--6163609	231	2.1	229	83	7	612	36	14	13	35	1.85
6163585--6163680	37	2.6	37	81	0	111	35	17	13	33	1.89
6163353--6163666	89	3.5	89	83	3	389	36	14	14	34	1.87
6163501--6163787	126	2.3	124	81	5	353	34	15	15	34	1.89
6163616--6163703	37	2.4	37	88	3	124	32	17	18	31	1.94
6164395--6164734	146	2.3	145	82	3	407	35	14	9	40	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6166675--6167019	171	2.0	171	88	2	514	39	9	12	38	1.76
6171828--6171898	17	4.2	17	70	13	56	5	19	2	71	1.18
6172684--6172723	21	1.9	21	84	0	53	22	10	17	50	1.76
6172785--6172860	40	1.9	40	84	10	102	60	11	13	14	1.59
6176565--6176623	28	2.1	28	87	0	82	54	8	11	25	1.65
6181918--6181943	2	13.0	2	100	0	52	0	50	0	50	1.00
6183188--6183227	21	1.9	21	84	0	53	52	22	0	25	1.47
6185273--6185345	21	3.4	21	71	19	62	65	1	32	0	1.01
6185271--6185346	14	5.6	13	75	21	59	64	1	34	0	1.02
6185277--6185336	18	3.2	18	79	18	52	66	1	31	0	1.01

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106