genome.fa.s57.2.7.7.80.10.50.1000.53.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167882.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_15, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22478863

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   

This is table  53  of  106  ( 12717 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9276507--9276563	19	2.9	19	76	23	64	71	8	5	14	1.27
9276803--9276858	25	2.1	29	83	12	75	71	0	0	28	0.86
9276797--9276854	12	4.7	12	80	6	71	68	0	0	31	0.89
9278017--9278057	11	3.2	13	80	13	50	73	0	9	17	1.09
9278011--9278066	24	2.4	23	81	3	67	78	0	7	14	0.95
9282228--9283194	487	2.0	487	98	0	1882	38	8	8	44	1.65
9286362--9286514	63	2.4	63	79	7	184	38	12	14	34	1.84
9286845--9287247	206	2.0	203	85	4	551	39	12	12	35	1.81
9287049--9287751	292	2.4	290	79	4	693	37	14	13	34	1.86
9287675--9287873	63	3.2	62	78	6	179	37	14	12	36	1.84
9287764--9287900	63	2.2	63	81	6	154	40	10	14	33	1.81
9294626--9294747	55	2.2	56	80	5	140	50	10	11	27	1.72
9296333--9296365	7	4.7	7	92	0	57	51	0	3	45	1.16
9311146--9311224	23	3.4	23	76	11	72	43	1	1	54	1.16
9311327--9311387	30	2.0	30	83	0	77	22	24	9	42	1.84
9311442--9311565	63	2.0	63	90	0	194	33	13	11	41	1.80
9317259--9317290	15	2.1	15	100	0	64	43	18	12	25	1.85
9322309--9322358	2	25.5	2	87	4	75	48	2	0	50	1.12
9326563--9326592	7	4.3	7	95	0	51	36	0	0	63	0.95
9330033--9330069	18	2.2	18	90	9	60	8	0	8	83	0.80
9330105--9330159	18	3.1	18	73	19	51	32	5	9	52	1.56
9332973--9333018	24	1.9	24	86	0	65	17	13	23	45	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9338574--9338619	22	2.2	20	84	7	56	63	6	0	30	1.20
9338735--9338818	42	2.0	42	84	11	109	42	1	10	45	1.46
9341788--9341848	27	2.2	28	85	11	81	75	3	11	9	1.16
9343227--9343287	17	3.5	16	82	14	68	80	8	0	11	0.91
9343330--9343390	28	2.2	27	82	11	70	50	0	3	45	1.17
9343622--9343719	9	10.6	9	76	10	65	65	4	1	29	1.18
9343660--9343864	9	22.3	9	68	14	80	53	3	1	41	1.28
9343622--9343701	10	8.2	10	78	14	71	67	5	1	26	1.18
9343631--9343728	10	10.4	9	71	14	65	64	3	1	31	1.16
9343622--9343728	18	5.7	18	77	8	81	64	3	0	30	1.17
9343945--9343988	10	4.6	9	86	8	52	54	11	2	31	1.48
9343974--9344021	20	2.3	21	85	7	62	50	2	0	47	1.12
9344325--9344360	18	2.0	19	89	10	58	33	0	13	52	1.41
9344435--9344660	18	12.3	18	66	16	106	33	2	6	57	1.37
9344508--9344549	10	4.4	10	86	13	54	30	0	7	61	1.22
9344381--9344661	18	15.3	18	67	12	88	34	1	7	55	1.38
9344428--9344798	9	39.2	9	68	16	92	33	2	7	56	1.39
9344692--9344735	19	2.3	19	88	7	63	34	4	6	54	1.47
9344709--9344838	29	4.5	27	71	15	91	29	3	6	60	1.41
9344707--9344812	20	5.6	18	76	11	70	32	2	6	58	1.38
9344707--9344812	19	5.5	19	70	15	67	32	2	6	58	1.38
9344759--9344850	20	4.6	19	74	14	71	27	3	6	63	1.35
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9354714--9354793	32	2.5	32	85	4	108	18	16	23	41	1.90
9354769--9354902	68	2.0	68	81	0	160	29	17	17	36	1.92
9355190--9355240	20	2.5	21	80	3	59	54	0	1	43	1.11
9357532--9357579	21	2.4	19	82	6	60	2	16	2	79	0.93
9360369--9360631	131	2.0	131	90	2	413	34	20	9	34	1.85
9369680--9369721	20	2.1	20	95	0	75	35	2	9	52	1.47
9369710--9369778	16	4.3	16	73	12	61	26	8	11	53	1.65
9369704--9369763	16	3.8	16	80	2	68	30	8	10	51	1.64
9369740--9369790	17	2.8	18	82	5	59	25	7	13	52	1.67
9369837--9369965	20	6.5	20	83	5	147	31	4	9	54	1.53
9369838--9369965	40	3.2	40	82	7	163	31	4	9	54	1.53
9369841--9369979	59	2.3	60	85	8	178	33	4	8	53	1.51
9369902--9370004	40	2.6	39	82	13	106	31	3	10	54	1.53
9370023--9370077	25	2.3	25	82	14	71	34	3	10	50	1.55
9371521--9371560	18	2.2	18	100	0	80	27	15	22	35	1.94
9376116--9376160	24	1.9	24	81	4	56	51	4	20	24	1.66
9377071--9377162	26	3.5	26	68	24	68	28	17	8	45	1.78
9378047--9378283	43	5.5	42	82	6	228	26	11	17	45	1.82
9379173--9379235	19	3.3	19	76	6	65	34	4	7	52	1.52
9379198--9379260	32	2.0	32	87	0	90	31	6	9	52	1.59
9379269--9379318	17	2.8	17	87	6	64	24	10	14	52	1.71
9379338--9379411	25	2.9	25	77	2	76	33	6	10	48	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9379382--9379462	20	4.2	20	84	3	112	34	4	9	50	1.57
9379382--9379462	40	2.1	39	93	4	137	34	4	9	50	1.57
9379619--9379657	2	19.5	2	100	0	78	48	0	0	51	1.00
9379744--9379785	20	2.0	21	86	4	59	35	7	7	50	1.57
9379744--9379790	20	2.6	18	80	10	51	36	8	8	46	1.65
9379761--9379824	17	3.6	17	73	8	56	29	7	10	51	1.65
9379812--9379904	25	3.7	25	78	2	89	30	6	11	51	1.63
9379876--9379963	18	4.7	18	80	18	99	30	4	10	54	1.54
9379879--9379963	38	2.2	36	82	15	109	31	4	9	54	1.53
9379876--9379994	58	2.1	58	82	9	145	31	5	9	53	1.54
9380921--9380971	14	3.2	16	78	13	61	47	1	0	50	1.12
9384921--9384965	17	2.6	17	89	10	74	73	4	0	22	1.01
9384923--9384977	6	9.7	6	78	5	53	78	3	0	18	0.90
9384923--9384976	16	3.2	17	82	12	58	77	3	0	18	0.91
9386295--9386337	22	1.9	23	90	4	70	60	0	0	39	0.97
9388583--9388625	3	14.3	3	100	0	86	67	0	32	0	0.91
9393900--9393959	27	2.3	26	85	2	75	63	0	5	31	1.16
9399941--9399994	20	2.7	20	80	11	65	55	1	0	42	1.10
9402466--9402657	91	2.1	91	90	0	303	35	14	19	31	1.91
9403060--9403237	84	2.1	85	82	5	209	34	17	21	25	1.96
9403308--9403442	41	3.3	41	80	1	135	39	10	21	28	1.86
9404310--9404443	32	4.2	32	78	1	99	30	11	23	33	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9404330--9404475	64	2.3	64	80	2	168	28	11	26	33	1.91
9404354--9404458	32	3.3	33	81	10	119	23	10	31	34	1.89
9408822--9409010	105	1.8	105	84	2	263	29	15	19	35	1.93
9409413--9409458	21	2.2	20	84	3	56	50	2	4	43	1.34
9411375--9411427	18	2.9	18	85	0	79	49	15	11	24	1.77
9411424--9411639	56	3.8	58	85	3	267	42	8	10	37	1.71
9411424--9411639	114	1.9	114	82	6	276	42	8	10	37	1.71
9411420--9411644	58	3.9	56	79	6	202	43	9	10	36	1.71
9411633--9411695	24	2.9	22	81	9	67	55	15	3	25	1.55
9411630--9411696	21	3.0	21	77	10	71	52	14	2	29	1.57
9411978--9412059	39	2.1	38	84	6	103	37	18	8	35	1.81
9415198--9415222	12	2.1	12	100	0	50	28	16	16	40	1.89
9415218--9415275	14	4.1	14	72	12	55	46	24	6	22	1.76
9415342--9415392	26	2.0	26	84	0	66	50	27	1	19	1.58
9415279--9415399	14	8.6	14	66	18	65	44	28	2	23	1.66
9416484--9416534	10	5.2	9	78	21	50	80	0	5	13	0.89
9419656--9419730	39	1.9	39	83	5	98	41	8	20	30	1.81
9420032--9420063	7	4.6	7	96	0	55	87	3	0	9	0.64
9420349--9420392	5	9.0	5	85	9	56	79	2	18	0	0.83
9420359--9420392	11	2.8	13	86	13	54	82	0	17	0	0.67
9420871--9420936	26	2.6	27	81	13	77	80	0	16	3	0.84
9420863--9420920	9	6.0	9	77	15	62	81	0	17	1	0.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9421699--9421740	19	2.0	22	86	13	63	83	2	7	7	0.89
9422306--9422409	33	3.1	33	76	10	120	26	18	19	35	1.95
9423160--9423437	97	2.9	96	75	5	256	33	12	11	41	1.80
9423235--9423348	49	2.3	49	78	0	120	31	17	13	37	1.88
9423211--9423389	98	1.8	97	80	3	216	33	15	11	39	1.83
9424217--9424255	21	1.9	20	84	5	51	23	2	10	64	1.37
9425853--9425951	7	14.3	7	70	14	55	43	37	1	18	1.57
9425887--9425936	19	2.6	19	87	9	66	40	38	2	20	1.64
9429788--9432929	963	3.3	964	96	0	5808	28	17	17	37	1.92
9433289--9433321	13	2.4	14	90	5	50	60	3	12	24	1.46

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106