genome.fa.s57.2.7.7.80.10.50.1000.84.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167882.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_15, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22478863

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   

This is table  84  of  106  ( 12717 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17062615--17062722	56	2.0	54	85	10	148	62	1	1	34	1.17
17062554--17062746	75	2.6	76	78	8	177	60	1	2	36	1.18
17062793--17062833	15	2.7	16	81	7	50	60	2	4	31	1.30
17062826--17062871	20	2.2	21	88	3	67	54	4	0	41	1.20
17062855--17062927	17	4.5	16	73	11	60	71	1	1	26	1.02
17062722--17062904	63	2.9	63	77	11	153	61	4	2	32	1.28
17062876--17062938	20	3.2	20	80	11	76	71	0	1	26	0.95
17063049--17063111	17	3.6	17	78	6	63	34	3	6	55	1.41
17063062--17063112	18	2.9	18	85	11	70	39	3	3	52	1.38
17063048--17063142	19	5.2	18	71	10	59	31	2	7	58	1.37
17063658--17063698	20	2.0	21	86	9	59	43	0	0	56	0.99
17067504--17067830	173	1.9	173	82	5	410	42	7	8	41	1.65
17067938--17067970	18	1.9	17	88	11	50	48	6	6	39	1.53
17067459--17069523	181	11.7	181	73	8	1255	40	7	9	42	1.67
17069436--17069470	15	2.2	16	90	5	54	37	0	5	57	1.23
17069550--17073717	181	23.5	181	73	9	2244	40	8	9	42	1.66
17069588--17071793	902	2.5	890	78	6	2064	41	8	8	41	1.66
17072745--17073152	182	2.2	181	82	5	504	38	9	7	44	1.64
17073820--17074825	180	5.6	181	73	8	642	39	8	10	42	1.68
17074702--17074969	144	1.9	144	84	3	360	45	7	8	38	1.63
17074846--17082577	181	43.2	181	73	10	4117	40	7	9	42	1.66
17074846--17086343	723	16.2	715	72	11	5530	40	7	9	42	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17078095--17078441	177	2.0	178	83	3	441	44	9	6	39	1.63
17083040--17086308	180	18.4	177	71	11	1497	40	7	9	41	1.67
17084227--17086343	181	11.9	176	75	9	1431	40	7	9	41	1.67
17083534--17084915	692	2.0	692	80	6	1582	40	7	9	42	1.67
17086414--17089174	180	15.3	179	76	8	2022	40	7	9	41	1.66
17087347--17087379	17	2.0	17	88	5	50	48	0	12	39	1.40
17088674--17089474	349	2.3	346	81	8	846	38	7	10	42	1.68
17089035--17089337	168	1.8	168	86	4	450	40	5	10	42	1.64
17089568--17090226	178	3.7	174	76	11	585	41	8	10	40	1.68
17089644--17090819	613	1.9	603	82	7	1430	40	7	9	42	1.65
17090246--17091656	180	7.8	181	75	9	1019	40	7	9	42	1.67
17090955--17091389	181	2.4	181	81	4	446	40	7	9	43	1.64
17091663--17094371	181	15.2	179	75	7	1785	39	8	9	41	1.68
17091682--17094371	355	7.5	352	74	7	1829	40	8	9	41	1.68
17093858--17094855	502	2.0	501	81	6	1189	39	9	10	41	1.70
17093857--17094869	498	2.0	500	81	6	1183	39	9	9	41	1.70
17094364--17096694	181	13.1	178	76	8	1602	40	8	9	40	1.69
17094561--17096701	542	4.0	530	77	8	1804	41	8	9	40	1.69
17094535--17096692	358	6.0	356	76	8	1607	41	8	9	40	1.69
17094592--17103574	726	12.3	705	69	14	2167	40	8	9	41	1.69
17096642--17096800	81	2.0	81	96	0	291	39	11	7	41	1.69
17097327--17099345	181	11.4	173	75	9	823	41	8	9	40	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17097613--17104075	181	35.5	181	71	11	2566	40	8	9	41	1.68
17099034--17099366	171	2.0	168	84	4	436	40	6	10	42	1.65
17097621--17109435	362	32.4	363	68	13	3112	40	8	9	41	1.68
17099718--17109434	181	53.6	181	70	10	3479	40	8	9	41	1.68
17104094--17104722	313	2.0	314	90	3	1009	40	7	10	42	1.66
17104424--17104992	177	3.2	176	77	8	460	41	6	10	41	1.66
17104951--17105058	55	1.9	56	84	1	146	50	7	10	32	1.64
17104775--17105238	232	2.0	232	96	0	856	42	6	11	39	1.66
17104616--17105416	413	1.9	410	79	8	883	41	5	10	42	1.64
17105094--17106331	536	2.3	538	80	4	1354	39	8	10	42	1.70
17106283--17106358	34	2.2	35	92	2	127	43	9	11	35	1.73
17106316--17108978	721	3.7	719	76	7	1641	39	8	9	42	1.68
17108184--17108603	179	2.3	181	82	4	492	40	7	7	44	1.61
17109462--17111314	181	10.3	181	76	6	1422	41	9	8	40	1.68
17109462--17111314	535	3.5	524	78	7	1653	41	9	8	40	1.68
17111205--17111462	132	2.0	132	82	4	315	39	13	6	39	1.71
17111337--17111723	181	2.1	181	82	5	453	41	11	7	40	1.69
17111058--17111642	313	1.9	313	84	5	797	41	11	6	40	1.68
17112031--17112997	181	5.4	179	79	6	945	42	9	7	40	1.65
17112001--17115960	363	10.8	362	69	13	1145	41	9	8	40	1.67
17113014--17115960	181	16.5	181	74	7	2031	41	9	8	40	1.68
17117642--17118121	182	2.7	180	82	6	601	41	8	7	42	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17118140--17118805	181	3.7	181	76	9	614	41	10	7	40	1.68
17119285--17119340	28	2.0	28	100	0	112	46	3	17	32	1.66
17119311--17121201	181	10.6	181	73	8	1102	40	10	8	39	1.71
17119349--17120356	535	1.9	538	79	5	1153	41	11	7	39	1.69
17119804--17121107	701	1.9	700	79	6	1483	40	10	8	39	1.70
17121233--17121596	179	2.1	176	79	4	383	41	9	8	40	1.67
17121595--17125402	181	21.3	179	75	8	2612	41	9	8	40	1.68
17122106--17122160	18	3.1	18	69	12	51	29	10	9	50	1.68
17121595--17125307	717	5.2	706	74	10	2640	41	9	8	40	1.68
17126251--17126299	4	11.8	4	82	8	62	71	0	4	24	1.03
17126239--17126294	17	3.4	16	76	16	51	67	1	5	25	1.21
17126239--17126306	25	2.7	25	75	11	66	69	2	4	23	1.21
17127133--17127496	43	8.4	43	85	4	457	44	15	14	25	1.85
17127120--17127495	174	2.2	172	85	5	517	43	16	14	26	1.86
17127845--17127885	18	2.3	18	87	4	57	31	4	17	46	1.69
17128087--17128185	17	5.8	17	82	0	99	37	5	18	39	1.72
17128093--17128192	34	2.9	34	81	0	128	39	6	17	38	1.74
17128110--17128196	17	5.1	17	82	0	93	41	8	16	34	1.77
17128313--17128522	46	4.8	46	69	16	156	36	17	9	36	1.83
17128321--17128392	23	3.2	23	67	9	58	41	13	8	36	1.75
17133726--17133752	6	4.5	6	100	0	54	85	0	0	14	0.61
17133701--17133755	17	3.9	14	78	21	60	76	0	1	21	0.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17134386--17135433	182	5.9	178	77	9	775	42	9	7	39	1.67
17134368--17135344	176	5.5	176	75	11	647	43	10	7	39	1.66
17135506--17135830	178	1.8	181	83	7	439	41	7	7	42	1.62
17135901--17136357	182	2.6	176	76	11	443	38	8	10	41	1.70
17136494--17136969	176	2.7	177	78	4	422	39	10	10	39	1.74
17135914--17137078	609	1.9	604	79	6	1293	39	9	10	40	1.71
17136468--17137556	181	6.0	177	76	7	656	40	9	9	41	1.69
17137528--17137584	28	2.0	28	96	0	105	50	3	0	45	1.18
17137559--17138056	182	2.8	178	76	7	455	40	7	10	41	1.67
17138654--17140136	180	8.2	179	77	6	1264	40	8	9	41	1.68
17138668--17140136	543	2.7	535	81	4	1642	40	8	9	41	1.68
17139863--17140449	323	1.8	321	79	4	689	40	7	9	42	1.65
17140240--17143279	181	16.9	181	75	8	1955	39	8	10	41	1.70
17143220--17143405	94	2.0	94	80	3	214	32	5	9	51	1.59
17143310--17147854	180	25.4	178	72	9	1702	40	7	9	42	1.67
17145230--17145756	172	3.0	169	75	10	454	40	7	9	43	1.64
17145588--17147696	181	11.7	180	74	7	586	39	8	9	42	1.67
17148071--17148103	18	1.9	17	88	11	50	48	3	6	42	1.43
17148408--17148455	18	2.8	16	81	9	51	50	6	6	37	1.53
17148283--17151134	181	15.9	180	75	8	1988	40	8	9	41	1.68
17145589--17151133	544	10.4	535	73	11	1671	40	8	9	41	1.68
17150024--17150063	18	2.4	17	87	8	55	45	2	7	45	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17151205--17161221	181	55.8	180	71	10	4363	39	8	9	41	1.69
17152328--17157739	357	15.2	355	72	9	1055	40	8	9	41	1.69
17152217--17166302	181	78.8	176	68	14	3084	40	8	9	41	1.69
17155221--17155253	15	2.2	15	89	10	50	36	0	9	54	1.32
17157086--17157140	28	2.0	28	85	0	74	40	10	18	30	1.85
17156951--17157300	190	1.8	189	81	7	433	40	10	9	40	1.72
17157269--17157739	177	2.6	177	78	5	389	42	9	9	37	1.71
17157714--17157765	26	2.0	26	92	0	86	40	17	5	36	1.73
17158231--17158266	16	2.1	17	90	10	56	44	5	11	38	1.63
17157740--17161537	177	21.2	179	69	12	1484	39	8	10	42	1.68

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106