genome.fa.s57.2.7.7.80.10.50.1000.54.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167882.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_15, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22478863

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   

This is table  54  of  106  ( 12717 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9434313--9434370	29	2.0	29	100	0	116	37	10	17	34	1.84
9437468--9437679	109	1.9	110	91	0	345	50	9	8	31	1.66
9437741--9437848	14	8.0	14	70	15	84	50	16	7	25	1.70
9437729--9437789	28	2.2	27	91	2	95	49	19	8	22	1.75
9437741--9437853	40	2.8	40	81	5	120	53	15	7	23	1.67
9437729--9437846	14	8.8	13	69	9	60	50	17	7	23	1.71
9444169--9444197	15	1.9	15	100	0	58	48	0	24	27	1.51
9447383--9447538	59	2.6	61	82	3	199	34	14	7	44	1.72
9447536--9447574	20	2.0	20	94	0	69	46	2	7	43	1.46
9447736--9447765	11	2.6	11	94	5	51	80	6	0	13	0.91
9449829--9449871	21	2.1	20	83	12	52	53	9	2	34	1.46
9449916--9449969	17	3.0	18	74	15	58	48	9	5	37	1.59
9449925--9449974	18	2.9	16	75	16	55	50	12	6	32	1.64
9449907--9449998	35	2.5	35	77	8	85	51	13	3	32	1.57
9450114--9450173	19	3.3	18	80	17	70	53	11	5	30	1.58
9450172--9450209	4	9.0	4	88	11	58	71	2	2	23	1.12
9450125--9450182	19	3.2	18	80	9	64	55	12	5	27	1.58
9450254--9450415	87	1.9	88	84	2	220	54	10	5	29	1.57
9450296--9450376	20	4.3	20	66	15	55	54	11	4	29	1.56
9450305--9450349	23	2.0	23	91	4	74	62	8	4	24	1.43
9450326--9450444	32	3.7	32	89	1	175	57	10	3	29	1.48
9450390--9450485	20	5.1	20	67	25	57	53	9	5	32	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9450415--9450485	20	3.4	21	81	11	83	52	9	5	32	1.58
9451119--9451149	16	1.9	16	93	0	53	80	9	0	9	0.90
9451713--9451737	13	1.9	13	100	0	50	40	12	24	24	1.88
9453002--9453042	9	4.7	9	87	6	57	7	2	0	90	0.54
9453001--9453042	17	2.6	17	89	10	63	7	2	0	90	0.53
9458980--9459034	20	2.8	20	78	10	58	49	14	5	30	1.66
9459127--9459176	17	2.9	16	85	11	55	52	14	4	30	1.59
9459325--9459410	32	2.6	32	83	3	100	58	9	4	27	1.49
9459272--9459381	56	2.0	52	84	6	139	59	10	6	24	1.53
9460016--9460059	22	2.0	21	83	12	54	77	4	2	15	1.04
9477201--9477227	2	13.5	2	100	0	54	51	0	48	0	1.00
9480697--9480729	2	16.5	2	100	0	66	0	51	0	48	1.00
9481257--9481393	70	2.0	70	97	0	256	29	18	16	35	1.93
9488799--9488848	2	25.0	2	95	0	91	0	48	0	52	1.00
9489619--9489660	22	1.9	22	85	0	57	33	2	2	61	1.21
9489618--9489666	22	2.2	22	77	0	53	30	2	2	65	1.15
9489649--9489685	16	2.2	17	90	4	58	27	2	0	70	1.01
9489786--9489814	14	2.1	14	100	0	58	24	0	0	75	0.80
9489955--9489999	20	2.2	21	84	4	56	46	2	4	46	1.35
9490275--9490354	34	2.3	35	85	8	101	62	2	1	33	1.16
9490304--9490334	16	1.9	16	100	0	62	67	0	0	32	0.91
9490312--9490368	20	2.8	19	73	19	53	63	0	1	35	1.05
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9490480--9490521	22	2.0	22	86	9	61	59	2	4	33	1.31
9495270--9495306	19	1.9	19	88	0	56	37	10	10	40	1.75
9499512--9499572	24	2.6	24	78	21	67	36	6	14	42	1.72
9499646--9499706	31	2.0	31	96	0	113	47	6	0	45	1.28
9507447--9507555	9	11.1	10	76	16	88	27	1	1	68	1.10
9507443--9507540	3	32.3	3	82	11	96	28	1	2	68	1.07
9507440--9507532	26	3.3	28	77	14	102	26	1	2	69	1.06
9507453--9507551	45	2.2	44	84	12	130	28	2	2	67	1.12
9508472--9508720	59	4.4	56	74	15	197	50	6	10	33	1.61
9508517--9508720	53	3.5	57	75	14	143	50	6	8	34	1.59
9508699--9508733	14	2.4	15	85	9	54	60	5	5	28	1.43
9512879--9512974	9	10.1	9	81	12	97	81	0	16	2	0.79
9513195--9513224	15	1.9	16	93	6	53	30	10	6	53	1.60
9513607--9513769	70	2.3	71	77	7	163	31	6	30	31	1.83
9514169--9514324	21	6.9	21	71	14	105	37	10	12	38	1.79
9514169--9514352	46	4.0	46	85	0	233	38	9	13	38	1.77
9514173--9514349	25	7.6	25	73	14	117	39	9	12	38	1.76
9514607--9514726	3	38.3	3	82	11	111	29	1	1	67	1.10
9514612--9514726	33	3.3	34	81	14	128	29	1	1	66	1.11
9514608--9514731	36	3.5	36	86	5	164	29	2	1	66	1.13
9514600--9514673	4	19.0	4	81	15	61	25	0	1	72	0.92
9515632--9515927	59	4.9	57	72	15	161	48	5	11	34	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9518146--9518172	2	13.5	2	100	0	54	51	0	0	48	1.00
9527761--9527804	19	2.3	19	88	0	61	59	6	4	29	1.44
9528367--9528408	20	2.1	20	100	0	84	40	4	9	45	1.58
9528526--9528556	3	10.3	3	100	0	62	67	0	0	32	0.91
9529530--9529584	19	2.8	20	83	8	69	14	7	9	69	1.36
9529530--9529593	19	3.2	20	78	8	60	14	7	9	68	1.38
9529994--9530059	16	4.1	16	74	2	69	54	3	7	34	1.44
9530512--9530540	15	1.9	15	100	0	58	62	13	0	24	1.32
9539550--9539776	115	2.0	114	89	0	346	22	34	19	23	1.96
9540109--9540150	16	2.5	17	84	7	50	83	4	7	4	0.91
9542291--9542329	13	3.0	13	80	0	51	41	0	0	58	0.98
9542365--9542411	18	2.7	18	90	3	69	59	0	0	40	0.97
9542838--9542885	12	3.9	12	78	21	55	52	0	0	47	1.00
9542847--9542920	14	5.4	14	79	12	82	43	0	0	56	0.99
9542838--9542927	26	3.3	26	86	7	126	46	1	0	52	1.07
9546069--9546134	27	2.5	25	75	15	62	42	1	3	53	1.25
9546236--9546265	12	2.5	12	100	0	60	46	6	0	46	1.29
9550329--9550393	3	21.7	3	96	0	121	32	1	0	66	1.01
9552592--9552727	39	3.5	39	78	9	143	25	11	18	45	1.82
9554784--9554892	54	2.0	53	82	8	132	45	7	10	36	1.66
9566038--9566366	164	2.0	164	94	0	577	32	24	22	21	1.98
9568096--9568135	20	2.0	20	100	0	80	25	5	10	60	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9568805--9568890	45	1.9	45	85	4	120	29	1	30	39	1.64
9572885--9572909	2	12.5	2	100	0	50	48	0	0	52	1.00
9574209--9574248	20	2.0	20	100	0	80	25	5	10	60	1.49
9574918--9575003	45	1.9	45	85	4	120	29	1	30	39	1.64
9577949--9577977	13	2.1	14	93	6	51	0	10	3	86	0.69
9580323--9580362	20	2.0	20	100	0	80	25	5	10	60	1.49
9581032--9581117	45	1.9	45	85	4	120	29	1	30	39	1.64
9584067--9584095	13	2.1	14	93	6	51	0	10	3	86	0.69
9586440--9586478	20	2.0	20	95	5	71	25	5	10	58	1.51
9587159--9587244	45	1.9	45	85	4	120	29	1	30	39	1.64
9590192--9590220	13	2.1	14	93	6	51	0	10	3	86	0.69
9597554--9597704	77	2.0	77	85	2	205	35	15	11	37	1.84
9597859--9597940	43	1.9	43	87	0	119	28	17	19	35	1.94
9612523--9612691	74	2.3	74	94	3	297	42	6	8	42	1.60
9613472--9613496	1	25.0	1	100	0	50	0	0	0	100	0.00
9620981--9621013	2	16.5	2	100	0	66	51	0	48	0	1.00
9625364--9625405	19	2.3	19	87	4	59	52	0	0	47	1.00
9625393--9625443	23	2.3	22	86	3	66	41	1	3	52	1.31
9629037--9629105	35	2.0	35	94	0	120	42	15	10	31	1.81
9630805--9630917	57	2.0	57	98	0	217	32	7	23	37	1.82
9633580--9633611	13	2.5	13	100	0	64	43	34	6	15	1.72
9637645--9637697	16	3.4	16	78	5	63	47	1	3	47	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9637690--9637738	16	3.0	16	76	5	53	55	4	0	40	1.19
9637602--9638023	58	7.3	55	72	16	211	51	4	8	35	1.53
9637801--9638023	58	3.8	58	80	10	231	52	4	9	33	1.55
9642082--9642136	7	8.1	7	80	11	62	83	0	14	1	0.73
9642087--9642146	27	2.2	28	85	8	79	81	0	15	3	0.81
9642085--9642135	11	4.5	11	75	20	52	84	0	13	1	0.71
9642169--9642200	16	1.9	17	93	6	57	46	12	12	28	1.78
9642378--9642412	17	2.1	17	88	0	52	51	11	0	37	1.38
9646898--9646926	14	2.1	14	100	0	58	37	34	0	27	1.57
9648666--9648760	46	2.1	46	86	4	129	48	5	7	38	1.54

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106