genome.fa.s57.2.7.7.80.10.50.1000.57.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167882.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_15, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22478863

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   

This is table  57  of  106  ( 12717 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10107588--10107614	6	4.5	6	100	0	54	85	14	0	0	0.61
10110417--10110457	20	2.1	19	86	4	55	70	9	19	0	1.14
10110458--10110558	52	1.9	53	92	4	170	41	6	12	38	1.70
10110515--10110714	58	3.4	59	81	11	214	40	5	14	40	1.68
10113597--10113636	17	2.3	17	91	4	62	72	2	2	22	1.09
10114383--10115432	236	4.4	236	77	8	902	51	5	11	31	1.60
10114390--10115404	476	2.1	474	80	6	1101	51	5	11	31	1.60
10114383--10115424	235	4.4	233	77	8	824	51	5	11	31	1.60
10127362--10127387	2	13.0	2	100	0	52	50	0	0	50	1.00
10127565--10127609	22	2.0	23	82	8	56	42	2	11	44	1.52
10137279--10137307	15	1.9	15	100	0	58	58	13	0	27	1.36
10137383--10137475	30	3.1	30	81	10	118	48	4	10	36	1.58
10137806--10137901	50	1.9	50	91	4	158	40	12	14	32	1.83
10141735--10141783	2	24.5	2	82	0	62	40	0	8	51	1.32
10145526--10145562	19	2.0	19	94	5	67	70	0	10	18	1.16
10145702--10145751	18	2.7	18	81	3	55	36	2	6	56	1.36
10158393--10158422	15	2.0	15	93	0	51	53	0	10	36	1.35
10166726--10166807	40	2.0	40	100	0	164	36	10	9	42	1.73
10169887--10169923	18	2.0	19	89	5	58	81	0	8	10	0.89
10169888--10169920	14	2.3	15	89	5	50	81	0	6	12	0.85
10171446--10171494	25	2.0	25	84	8	64	18	32	22	26	1.97
10171523--10171601	3	26.7	3	94	2	115	26	0	5	68	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10171652--10171685	3	11.3	3	87	0	50	35	0	2	61	1.11
10171684--10171743	8	6.7	9	81	14	63	0	15	0	85	0.61
10171684--10171748	14	4.6	14	83	11	71	0	13	1	84	0.69
10172218--10172254	19	1.9	19	88	0	56	27	8	21	43	1.80
10183195--10183252	1	58.0	1	75	0	53	87	5	0	6	0.65
10183198--10183252	8	6.6	8	82	15	67	87	5	0	7	0.68
10183192--10183252	17	3.8	17	83	14	69	86	6	0	6	0.69
10183192--10183252	26	2.4	25	84	12	81	86	6	0	6	0.69
10183810--10183918	41	2.7	41	82	0	146	26	10	23	39	1.86
10184070--10184631	114	4.9	114	80	4	517	26	26	13	33	1.93
10184070--10184664	228	2.6	228	82	1	692	26	26	13	33	1.93
10185044--10185642	114	5.3	114	80	5	577	27	26	12	33	1.93
10185046--10185642	228	2.6	228	79	4	650	27	26	12	33	1.93
10185984--10186022	15	2.7	15	88	11	55	0	15	0	84	0.62
10187001--10187059	26	2.4	24	88	5	82	72	5	8	13	1.24
10187064--10187120	26	2.1	28	83	6	73	68	7	0	24	1.14
10190933--10190965	3	11.0	3	100	0	66	66	0	0	33	0.92
10192995--10193113	20	6.2	20	75	16	65	31	4	10	53	1.53
10193038--10193213	21	7.9	21	71	18	97	33	2	9	53	1.48
10193038--10193184	47	3.2	45	79	12	149	34	2	8	55	1.43
10193043--10193198	24	6.6	24	74	17	139	32	2	9	55	1.46
10192995--10193218	21	10.7	20	70	24	83	32	3	9	54	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10193182--10193244	32	2.0	32	90	0	99	30	4	11	53	1.56
10193057--10193224	24	7.3	24	74	14	113	33	2	8	55	1.43
10207366--10207394	6	4.8	6	100	0	58	34	0	17	48	1.47
10208138--10208237	38	2.6	39	81	9	107	26	11	20	43	1.84
10208228--10208440	85	2.5	84	79	11	243	30	15	16	37	1.89
10208202--10208498	128	2.3	129	82	7	340	30	13	16	39	1.88
10208204--10208498	86	3.5	83	76	10	258	30	13	15	39	1.87
10208204--10208512	43	7.2	43	75	13	212	31	13	15	39	1.86
10209470--10209644	21	7.9	21	67	20	79	34	3	9	52	1.51
10209489--10209630	24	6.1	24	73	16	120	34	2	9	53	1.47
10209427--10209644	21	10.4	20	65	24	62	33	5	10	51	1.57
10209489--10209616	47	2.8	45	79	12	138	35	2	8	53	1.44
10209717--10209781	12	5.5	12	71	10	53	20	7	15	56	1.63
10209848--10209884	19	1.9	19	88	0	56	32	5	8	54	1.53
10209854--10209892	19	2.1	19	85	0	51	30	5	10	53	1.56
10209995--10210081	35	2.5	34	72	16	81	31	5	6	56	1.49
10210013--10210061	20	2.6	19	75	9	55	28	4	10	57	1.50
10210013--10210103	35	2.4	37	80	10	105	30	6	9	52	1.60
10220355--10220511	52	3.0	51	84	5	190	26	25	8	39	1.85
10220792--10220887	50	1.9	51	80	6	115	19	30	10	39	1.85
10221430--10221574	52	2.8	52	84	2	184	28	21	6	42	1.78
10221624--10221653	11	2.7	11	89	0	51	46	26	0	26	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10221857--10221923	25	2.9	22	79	12	80	23	35	7	32	1.83
10221875--10221957	25	3.3	24	77	3	85	21	33	8	36	1.84
10222524--10222669	52	2.8	52	86	2	195	26	24	8	40	1.84
10222694--10222735	11	3.8	11	87	0	66	52	26	0	21	1.47
10222694--10222736	22	2.0	22	95	0	77	51	25	0	23	1.49
10223968--10224281	155	2.0	155	100	0	628	25	14	37	22	1.92
10224872--10224906	15	2.2	16	90	5	54	37	8	5	48	1.58
10236670--10236763	4	24.2	4	82	6	77	51	9	1	38	1.42
10236670--10236763	6	16.2	6	80	6	77	51	9	1	38	1.42
10236672--10236763	12	7.8	12	86	3	98	51	9	1	38	1.42
10241496--10241537	20	2.0	22	86	9	61	40	0	0	59	0.97
10242530--10242595	27	2.4	28	82	7	73	53	1	1	43	1.19
10248954--10249031	39	2.0	39	97	0	147	39	19	7	33	1.80
10254828--10254852	2	12.5	2	100	0	50	52	0	0	48	1.00
10258013--10258066	22	2.5	22	82	14	60	50	0	1	48	1.11
10258072--10258106	18	1.9	18	88	0	52	51	2	0	45	1.16
10262851--10262972	39	3.1	39	85	3	156	35	35	7	22	1.82
10264199--10264395	98	2.0	98	98	0	385	34	21	17	26	1.96
10268738--10268770	12	2.8	12	100	0	66	57	0	0	42	0.98
10268829--10268921	37	2.6	35	79	12	100	62	4	2	31	1.26
10268947--10268999	18	2.8	19	88	5	65	60	7	5	26	1.46
10268967--10269027	18	3.4	18	84	10	72	65	3	3	27	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10269077--10269139	20	3.2	20	86	2	83	60	3	1	34	1.22
10269229--10269296	8	7.6	9	78	16	70	30	1	4	63	1.23
10269225--10269299	9	8.4	9	73	19	50	37	1	4	57	1.26
10269290--10269338	21	2.4	21	77	16	57	42	4	2	51	1.32
10269448--10269505	10	5.8	10	78	8	55	25	3	3	67	1.22
10269536--10269610	10	7.6	10	79	5	64	41	1	4	53	1.28
10269539--10269610	19	3.7	19	79	5	72	40	1	4	54	1.28
10270342--10270380	11	3.5	11	78	0	51	48	0	0	51	1.00
10270469--10270523	24	2.3	25	81	9	69	47	0	0	52	1.00
10270928--10270971	23	1.9	23	86	9	63	43	43	11	2	1.53
10273786--10273849	26	2.4	27	81	5	76	73	0	7	18	1.07
10274735--10274853	3	40.3	3	79	12	106	65	0	7	26	1.24
10275196--10275783	117	5.0	116	76	7	465	43	14	23	19	1.87
10275196--10275783	235	2.5	232	79	6	589	43	14	23	19	1.87
10287145--10287193	25	2.0	25	87	0	71	69	16	2	12	1.28
10289523--10289547	13	1.9	13	100	0	50	32	4	8	56	1.47
10289756--10290150	126	3.2	122	76	10	325	41	10	10	38	1.74
10289883--10290625	62	11.8	63	65	12	170	39	11	11	37	1.77
10289883--10290089	63	3.3	63	70	13	165	40	12	10	36	1.77
10290157--10290608	126	3.6	123	77	7	419	38	10	11	40	1.76
10290131--10290634	126	4.0	125	75	6	401	38	11	10	39	1.77
10290651--10290983	127	2.6	125	80	10	324	44	10	7	37	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10291180--10291220	2	20.5	2	100	0	82	51	0	0	48	1.00
10294385--10294557	86	2.0	86	95	0	310	33	17	17	30	1.94
10295654--10295696	22	2.0	22	85	0	59	34	9	6	48	1.62
10297129--10297163	18	1.9	18	88	0	52	25	5	20	48	1.71
10297363--10297393	12	2.6	12	94	0	53	35	9	6	48	1.62
10300115--10300169	22	2.5	22	96	0	101	34	7	7	50	1.58
10300115--10300180	22	3.0	22	90	0	96	37	9	6	46	1.60
10314829--10314883	25	2.3	25	75	6	60	49	0	0	50	1.00
10319109--10319507	202	2.0	203	85	4	538	41	14	10	33	1.80
10320332--10320372	18	2.2	19	86	4	57	65	2	0	31	1.05

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106