genome.fa.s57.2.7.7.80.10.50.1000.62.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167882.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_15, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22478863

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   

This is table  62  of  106  ( 12717 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11253757--11253799	22	2.0	22	86	9	61	58	0	0	41	0.98
11257816--11257880	32	2.2	31	83	10	82	46	0	0	53	1.00
11257944--11257998	18	3.1	18	75	20	53	54	0	0	45	0.99
11257971--11258039	27	2.4	30	79	18	83	46	1	0	52	1.09
11258752--11258785	16	2.1	16	89	10	52	29	0	0	70	0.87
11259035--11259068	14	2.4	14	90	9	52	52	0	2	44	1.16
11260645--11260671	8	3.4	8	100	0	54	48	0	22	29	1.51
11260726--11260798	26	2.8	25	82	13	92	45	4	5	45	1.45
11260695--11260745	22	2.4	21	84	9	68	45	5	1	47	1.38
11260726--11260802	27	2.9	27	86	9	104	45	3	5	45	1.44
11260999--11261073	37	2.0	37	89	5	116	44	2	5	48	1.39
11261119--11261455	71	4.7	71	74	8	231	42	7	4	45	1.52
11261119--11261457	142	2.4	143	81	9	374	42	7	4	45	1.52
11261340--11261376	19	2.1	19	85	10	51	40	2	5	51	1.39
11261254--11261512	71	3.6	71	72	9	206	42	6	3	46	1.47
11261191--11261508	142	2.2	139	81	11	344	43	7	3	45	1.50
11261542--11261620	16	4.9	16	71	13	63	44	3	0	51	1.19
11261542--11261620	32	2.4	32	85	2	104	44	3	0	51	1.19
11265293--11265356	28	2.2	29	81	15	80	57	0	0	42	0.98
11272673--11272718	21	2.3	20	77	7	58	43	0	0	56	0.99
11274189--11276348	161	13.6	157	72	13	985	34	8	14	43	1.75
11274218--11276190	322	6.2	321	75	9	1370	34	8	14	43	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11274781--11275723	465	2.0	463	84	2	1203	32	8	15	44	1.76
11280137--11280176	19	2.1	19	90	4	62	72	0	2	25	0.97
11289547--11289621	34	2.2	33	79	11	80	36	14	14	34	1.87
11289641--11289713	34	2.1	34	84	0	92	32	15	15	36	1.88
11289727--11289809	34	2.4	34	80	6	87	46	9	4	38	1.58
11291507--11291559	17	3.1	17	83	0	70	49	0	1	49	1.12
11294436--11294756	22	15.2	22	66	16	83	47	4	10	37	1.59
11294677--11294801	43	2.9	44	79	11	125	48	8	8	35	1.64
11294590--11294910	22	14.8	22	68	12	90	49	5	8	36	1.57
11294855--11294888	11	3.0	12	83	16	54	64	0	0	35	0.94
11294902--11294965	19	3.3	19	80	8	58	45	6	10	37	1.65
11295016--11295208	22	8.8	22	71	13	101	47	8	9	34	1.67
11295470--11295544	21	4.1	19	66	22	52	49	2	8	40	1.46
11295681--11295733	21	2.5	21	87	3	70	47	3	11	37	1.58
11295725--11295816	22	4.2	22	77	9	73	42	5	10	41	1.63
11295975--11296085	33	3.4	33	71	9	100	46	7	8	37	1.61
11296047--11296111	11	5.9	11	75	7	51	46	6	10	36	1.64
11296040--11296220	22	8.3	22	76	7	104	44	8	9	37	1.68
11296040--11296193	44	3.5	44	73	14	131	43	7	11	37	1.69
11295944--11296155	66	3.3	65	78	8	184	44	7	9	38	1.65
11296071--11296249	22	8.2	22	78	3	92	44	8	9	37	1.67
11296568--11296629	21	3.0	21	82	0	61	51	9	4	33	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11296582--11296649	21	3.2	21	89	4	93	50	10	7	32	1.64
11298327--11298361	16	2.1	17	89	5	54	40	0	0	60	0.97
11305283--11305495	114	1.9	115	89	1	338	44	7	9	39	1.64
11305550--11305599	22	2.3	22	78	0	55	54	4	2	40	1.31
11305933--11306003	34	2.0	35	83	5	90	46	0	4	49	1.21
11307289--11307313	12	2.1	12	100	0	50	56	16	0	28	1.41
11308097--11308413	22	14.6	22	67	13	88	51	4	8	35	1.53
11308355--11308391	17	2.2	17	90	0	56	59	0	8	32	1.27
11308375--11308444	22	3.2	22	75	15	54	48	2	12	35	1.56
11308642--11308679	19	2.1	18	90	5	58	68	0	0	31	0.90
11308699--11308747	22	2.3	21	82	3	53	51	6	6	36	1.52
11308776--11308861	44	1.9	44	81	11	104	44	5	5	44	1.52
11309308--11309346	11	3.5	11	78	0	51	56	7	2	33	1.41
11316695--11316742	22	2.2	22	88	0	69	39	10	10	39	1.74
11316606--11316761	22	7.0	22	67	15	61	47	7	8	36	1.62
11316954--11317007	22	2.5	22	90	0	90	44	1	11	42	1.50
11317089--11317177	22	4.0	22	77	0	88	41	5	10	42	1.62
11317476--11317954	22	21.7	22	70	12	187	49	3	7	39	1.49
11317476--11317954	11	43.5	11	62	14	94	49	3	7	39	1.49
11317476--11317954	44	10.9	44	72	11	248	49	3	7	39	1.49
11317539--11317712	68	2.6	66	81	11	178	51	3	5	39	1.43
11317477--11317888	90	4.6	90	75	9	289	50	3	7	38	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11317961--11318001	21	2.0	21	90	0	64	43	2	9	43	1.50
11318020--11318090	22	3.2	21	80	9	70	47	11	5	35	1.63
11318052--11318133	33	2.5	33	75	11	78	47	4	6	41	1.50
11318030--11318178	44	3.4	44	74	5	113	46	7	7	38	1.60
11318512--11318574	22	2.9	22	76	2	65	52	14	3	30	1.57
11318510--11318603	20	4.4	20	72	10	71	48	13	4	32	1.62
11318510--11318603	41	2.2	43	85	9	122	48	13	4	32	1.62
11318510--11318614	21	5.0	21	73	5	95	48	12	4	34	1.62
11318597--11318629	16	2.1	16	88	11	50	60	6	3	30	1.36
11318780--11318811	15	2.1	15	94	0	55	56	6	12	25	1.59
11319399--11319427	13	2.1	14	93	6	51	79	0	20	0	0.74
11325454--11325482	2	14.5	2	100	0	58	48	0	0	51	1.00
11326421--11326491	8	9.2	8	72	14	60	46	0	1	52	1.09
11326419--11326481	25	2.7	23	83	11	67	44	0	1	53	1.10
11326419--11326486	28	2.6	26	78	17	77	45	0	1	52	1.09
11327494--11327560	33	2.0	33	97	0	125	41	2	13	41	1.59
11329650--11330036	196	2.0	196	87	3	555	32	19	19	28	1.96
11333304--11333359	14	3.7	15	75	20	53	33	3	0	62	1.12
11333319--11333364	24	2.0	23	86	4	65	36	4	2	56	1.31
11334377--11334418	17	2.5	17	80	7	50	54	0	11	33	1.37
11338181--11338235	24	2.3	24	81	3	58	27	1	0	70	0.97
11340502--11340543	18	2.4	19	84	11	54	66	0	2	30	1.04
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11352234--11352282	2	24.5	2	82	0	53	51	8	0	40	1.32
11358519--11358548	14	2.1	14	93	0	51	60	23	0	16	1.36
11361774--11361815	17	2.5	17	77	14	50	59	7	2	30	1.37
11363108--11363146	17	2.2	17	86	9	51	71	0	0	28	0.86
11366425--11366514	6	15.8	6	67	22	52	48	0	0	51	1.00
11366450--11366519	13	5.3	13	74	16	63	44	0	0	55	0.99
11366495--11366556	16	4.0	15	81	6	70	48	0	3	48	1.17
11366494--11366589	31	3.2	31	75	14	101	51	0	3	45	1.17
11366577--11366626	24	2.1	24	100	0	100	58	4	4	34	1.36
11366658--11366684	12	2.2	12	100	0	54	44	0	14	40	1.46
11366690--11366719	10	3.0	10	95	0	51	40	3	0	56	1.16
11368773--11368799	7	3.9	7	100	0	54	59	25	14	0	1.36
11369541--11369575	3	12.0	3	93	6	63	0	34	0	65	0.93
11383288--11383368	40	2.0	40	95	0	144	32	17	2	48	1.60
11383829--11383854	9	2.9	9	100	0	52	0	11	53	34	1.37
11385019--11385197	99	1.8	99	92	0	304	21	14	20	43	1.87
11400236--11400300	26	2.5	26	75	9	71	46	7	1	44	1.41
11406432--11406504	37	2.0	36	84	10	94	46	2	0	50	1.15
11406640--11406699	30	2.0	31	86	3	86	51	0	1	46	1.10
11406710--11406779	24	2.8	25	77	16	83	35	0	1	62	1.04
11409934--11409996	31	2.0	31	87	0	90	31	4	3	60	1.33
11410737--11410771	3	11.7	3	93	0	61	62	0	2	34	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11410737--11410792	15	3.8	14	84	13	51	64	0	1	33	1.04
11411122--11411154	11	3.1	11	91	4	50	90	9	0	0	0.44
11411122--11411165	10	4.4	10	83	8	54	88	9	2	0	0.59
11411121--11411195	18	4.3	18	77	9	75	78	16	1	4	0.96
11412242--11412302	16	3.9	15	75	14	61	67	1	1	29	1.10
11412240--11412299	31	1.9	31	93	0	102	65	1	1	31	1.13
11412479--11412513	3	11.7	3	100	0	70	68	0	0	31	0.90
11412758--11412791	17	2.0	17	94	0	59	76	0	2	20	0.92
11413824--11413865	19	2.2	19	86	0	57	85	2	4	7	0.80
11422838--11423090	50	5.2	48	74	5	204	30	11	15	42	1.82

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106