genome.fa.s57.2.7.7.80.10.50.1000.19.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167882.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_15, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22478863

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   

This is table  19  of  106  ( 12717 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3282214--3282275	20	3.1	20	70	13	56	46	0	0	53	1.00
3282219--3282279	21	3.0	21	76	13	74	50	0	0	49	1.00
3282491--3282556	22	3.0	22	82	8	82	27	21	25	25	1.99
3282621--3282665	22	2.0	22	86	4	63	26	26	24	22	2.00
3282518--3283074	109	5.1	109	82	7	544	39	17	19	22	1.92
3282519--3283074	219	2.5	218	82	4	654	39	17	19	22	1.92
3282854--3283272	198	2.1	197	82	4	488	40	17	19	23	1.91
3283051--3283608	110	5.1	109	81	5	590	39	17	19	24	1.92
3283251--3283294	22	2.0	22	90	0	70	27	18	27	27	1.98
3282759--3283601	329	2.7	307	80	7	802	39	16	19	23	1.91
3283052--3283556	219	2.3	221	84	4	655	40	16	19	23	1.91
3283492--3283685	88	2.2	88	85	1	255	40	16	20	22	1.91
3283382--3283915	198	2.7	197	87	2	723	38	16	21	23	1.93
3283581--3283803	110	2.0	111	89	4	344	38	15	21	24	1.93
3283691--3283889	87	2.3	88	85	3	260	37	14	23	24	1.92
3283865--3283922	22	2.6	22	83	2	71	27	18	25	27	1.98
3284047--3284093	22	2.1	22	92	0	76	25	14	27	31	1.95
3284247--3284271	12	2.1	12	100	0	50	36	8	16	40	1.77
3290366--3290413	20	2.5	19	83	12	62	62	10	0	27	1.27
3290406--3290430	5	5.0	5	100	0	50	80	0	0	20	0.72
3292163--3292193	16	1.9	16	93	0	53	19	0	35	45	1.51
3292192--3292344	15	10.0	15	80	11	141	17	0	33	49	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3292179--3292275	44	2.2	46	83	10	130	15	0	38	46	1.46
3292150--3292223	37	2.1	37	84	5	98	16	0	37	45	1.47
3292211--3292343	7	17.3	7	71	17	86	17	0	31	51	1.46
3292268--3292328	8	8.1	7	75	13	59	21	0	24	54	1.45
3292214--3292355	47	3.0	46	82	10	164	19	0	30	50	1.48
3292216--3292343	62	2.0	63	86	4	179	17	0	31	51	1.45
3301929--3301972	21	2.1	21	83	8	54	15	4	2	77	1.04
3302037--3302314	152	1.8	150	84	7	384	43	9	12	34	1.75
3303453--3303558	51	2.1	50	94	1	185	38	6	16	37	1.75
3304251--3304329	22	3.3	22	80	15	79	25	2	1	70	1.07
3304252--3304328	3	27.7	3	75	19	78	25	2	1	70	1.08
3312989--3313028	14	2.7	15	88	11	64	32	7	12	47	1.69
3318222--3318277	21	2.6	21	78	10	69	32	21	14	32	1.93
3318944--3318974	9	3.4	9	95	0	53	54	19	12	12	1.70
3320306--3320427	4	28.8	4	69	18	61	31	1	3	63	1.20
3320955--3320992	11	3.5	11	88	0	58	23	44	13	18	1.85
3321353--3321451	10	9.8	10	75	17	64	16	6	1	76	1.03
3321364--3321416	15	3.5	15	77	12	63	16	3	0	79	0.88
3321368--3321436	36	1.9	36	85	11	97	15	7	0	76	0.99
3321353--3321416	15	4.2	14	76	13	56	20	3	0	76	0.92
3321448--3321630	60	3.1	59	88	4	260	44	6	13	34	1.70
3341839--3341888	16	3.1	16	88	8	75	30	0	2	68	1.01
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3341853--3341907	22	2.7	20	78	13	58	30	3	5	60	1.37
3341814--3341889	3	25.0	3	84	7	82	27	1	2	68	1.11
3341902--3342015	5	22.2	5	75	7	77	34	6	5	54	1.48
3341901--3341974	29	2.4	30	82	6	87	35	5	5	54	1.47
3341901--3342001	29	3.5	28	74	20	75	33	5	5	54	1.49
3342156--3342207	3	17.3	3	100	0	104	67	0	0	32	0.91
3343368--3343511	65	2.2	65	82	2	164	44	10	20	24	1.83
3348434--3348488	3	18.7	3	75	17	53	70	0	3	25	1.03
3351515--3351553	20	2.0	20	85	10	53	30	5	5	58	1.41
3355468--3355530	16	3.9	16	73	8	56	17	4	33	44	1.70
3356981--3357022	9	4.8	9	91	5	68	0	0	16	83	0.65
3356973--3357022	17	2.9	16	85	11	64	2	0	14	84	0.72
3356973--3357022	26	1.9	26	95	0	91	2	0	14	84	0.72
3357185--3357959	49	15.9	49	83	7	931	35	25	11	27	1.90
3362182--3362705	263	2.0	261	90	2	818	29	8	23	39	1.83
3372104--3372159	21	2.6	21	78	10	69	32	21	14	32	1.93
3372823--3372854	9	3.6	9	95	0	55	56	18	12	12	1.67
3383424--3383474	20	2.5	20	78	9	59	27	13	17	41	1.87
3384619--3384658	20	2.0	20	95	0	71	57	0	5	37	1.21
3386874--3386927	25	2.2	25	86	0	72	29	11	22	37	1.89
3387023--3387064	20	2.0	21	95	4	77	52	9	4	33	1.55
3389135--3389169	18	1.9	18	88	0	52	42	8	2	45	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3389584--3389730	59	2.5	60	78	5	156	57	21	2	19	1.50
3389676--3389726	22	2.3	22	80	6	59	54	23	1	19	1.54
3400497--3400528	12	2.7	12	95	0	55	87	0	12	0	0.54
3408428--3408472	21	2.1	21	83	0	54	51	8	17	22	1.73
3408895--3408981	18	4.6	19	73	12	56	14	4	3	77	1.07
3408901--3408947	24	1.9	24	86	4	67	14	2	4	78	0.99
3408917--3408967	18	2.8	18	80	14	59	17	1	3	76	1.03
3419407--3419601	98	2.0	98	94	0	345	27	15	13	43	1.85
3425200--3425261	30	2.1	29	91	5	99	27	0	3	69	1.04
3425255--3425306	21	2.4	23	78	15	65	30	0	5	63	1.18
3425426--3425474	21	2.3	21	82	0	53	12	4	4	79	1.01
3425515--3425571	3	19.7	3	76	16	50	28	1	3	66	1.18
3426857--3426917	23	2.6	22	75	10	59	32	0	0	67	0.91
3428844--3428928	43	2.0	43	90	0	134	24	14	11	49	1.76
3432271--3432305	17	2.1	17	94	0	61	34	5	14	45	1.68
3442372--3442422	24	2.1	24	85	7	68	25	3	7	62	1.40
3447500--3447541	21	2.0	22	85	4	59	78	0	9	11	0.96
3449001--3449156	46	3.4	46	80	6	147	36	8	14	41	1.76
3449052--3449148	47	2.1	46	86	5	133	39	7	14	39	1.74
3449635--3449672	18	2.2	17	86	9	51	26	18	15	39	1.91
3449556--3449741	85	2.2	85	80	5	198	35	16	12	35	1.87
3449649--3449700	17	3.1	17	78	8	54	36	13	17	32	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3449681--3449718	17	2.2	18	86	13	53	44	7	13	34	1.72
3450207--3450257	24	2.1	24	85	7	68	25	3	9	60	1.45
3450812--3450859	25	1.9	25	87	8	71	14	2	12	70	1.25
3453298--3453385	22	4.0	22	71	4	79	46	20	9	23	1.79
3454301--3454333	16	2.1	16	100	0	66	9	30	6	54	1.56
3454303--3454341	16	2.4	16	91	4	60	10	35	5	48	1.59
3457618--3457754	61	2.2	61	83	2	168	42	12	3	41	1.60
3458682--3458732	25	2.2	23	78	18	61	39	23	5	31	1.79
3459420--3459597	88	2.0	88	93	0	302	34	20	7	37	1.80
3460837--3460885	19	2.5	20	87	12	75	73	8	4	14	1.21
3460820--3460876	19	3.1	19	85	14	75	73	8	3	14	1.20
3460815--3460882	19	3.8	18	78	14	70	75	7	2	14	1.14
3461807--3461832	3	8.7	3	100	0	52	34	0	30	34	1.58
3463124--3463275	81	1.9	83	88	5	238	40	15	12	31	1.84
3463208--3463406	110	1.8	109	84	1	272	40	11	15	32	1.83
3464276--3464310	15	2.2	16	90	5	54	77	14	5	2	1.07
3465426--3465542	16	7.5	15	76	11	101	45	35	2	17	1.62
3465445--3465542	32	3.1	32	80	8	112	44	36	1	17	1.56
3465442--3465542	47	2.1	47	83	7	125	46	35	0	16	1.54
3472238--3472295	18	2.9	21	72	17	68	81	5	8	5	0.99
3472650--3472694	19	2.4	19	85	7	65	82	6	11	0	0.84
3473988--3474076	41	2.2	41	87	4	126	37	17	11	33	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3473999--3474084	41	2.1	41	89	8	131	36	20	12	30	1.90
3474238--3474317	22	3.6	22	77	8	74	23	26	21	28	1.99
3474384--3474434	22	2.3	23	79	6	59	27	17	19	35	1.94
3474274--3474644	110	3.4	110	79	1	332	23	19	18	39	1.93
3474604--3474664	23	2.7	23	87	2	79	27	24	16	31	1.96
3474493--3476318	243	7.0	266	75	9	945	24	21	17	37	1.94
3474868--3474935	23	3.0	23	86	2	84	23	23	22	30	1.99
3474493--3475027	133	4.0	132	83	2	597	24	20	17	37	1.94
3474891--3475148	110	2.3	110	80	3	268	25	20	15	37	1.93
3475112--3475172	23	2.7	23	87	2	88	29	22	14	32	1.94

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106