genome.fa.s57.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167882.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_15, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22478863

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   

This is table  2  of  106  ( 12717 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
104529--105144	124	5.0	124	92	3	917	22	17	23	37	1.94
105153--105273	1	121.0	1	79	0	107	87	7	0	4	0.66
105153--105273	14	8.7	14	83	4	122	87	7	0	4	0.66
105154--105273	18	6.3	19	81	11	131	87	7	0	5	0.66
106166--106211	20	2.3	20	88	3	67	21	28	21	28	1.99
106524--106565	12	3.7	11	81	12	50	9	2	2	85	0.77
106631--106996	60	6.1	59	85	7	463	46	9	12	31	1.73
108914--108999	29	2.9	29	74	19	79	70	5	2	20	1.19
108938--108972	10	3.2	11	88	12	54	74	2	0	22	0.95
108949--109005	21	2.8	20	76	10	53	73	5	3	17	1.16
109878--110042	3	59.7	3	69	17	108	58	3	2	35	1.28
109878--110040	10	15.1	10	77	14	98	58	3	2	34	1.29
113012--113113	19	5.3	18	72	19	73	78	5	11	3	1.06
113012--113127	40	3.0	37	70	21	96	75	6	11	6	1.20
113274--113334	31	2.0	31	87	6	88	32	19	14	32	1.92
113446--113543	51	1.9	51	85	6	135	31	21	16	30	1.95
113396--113609	74	2.9	74	78	1	178	35	22	11	29	1.90
113615--113713	23	4.0	23	76	14	99	28	19	18	34	1.95
113638--113723	29	3.2	28	84	11	110	29	18	17	34	1.94
113670--113734	29	2.2	29	88	0	94	30	15	16	36	1.90
113752--113809	22	2.6	21	78	10	62	29	29	17	24	1.97
114363--114587	102	2.2	102	82	5	267	32	12	17	36	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
114414--114610	102	1.9	102	82	4	245	32	14	16	36	1.90
114713--114828	45	2.6	45	88	2	171	32	10	14	42	1.80
114850--114895	21	2.3	19	82	10	56	76	10	4	8	1.15
114858--114912	18	2.9	20	79	17	64	76	5	5	12	1.13
114858--114913	17	3.0	18	84	10	60	75	5	5	14	1.16
116746--116835	15	5.9	14	81	10	54	67	1	1	30	1.05
116741--116774	17	1.9	18	88	5	52	67	0	5	26	1.13
116767--116833	3	22.7	3	88	8	102	67	1	0	31	1.00
116995--117040	3	15.3	3	100	0	92	67	0	0	32	0.91
119189--119248	25	2.5	24	75	8	59	43	1	1	53	1.20
119376--119408	15	2.3	15	89	5	50	30	0	0	69	0.88
119141--119440	164	1.8	160	82	9	381	44	4	3	48	1.39
119693--119760	21	3.1	21	78	13	75	51	1	1	45	1.19
119701--119775	20	3.5	20	77	12	69	49	2	1	46	1.24
119874--119928	24	2.3	24	78	9	58	49	3	1	45	1.30
134477--134514	19	2.0	20	84	5	51	47	7	0	44	1.32
137182--137807	158	4.0	158	83	5	802	41	18	6	33	1.76
137174--137795	316	2.0	316	87	3	912	41	18	6	33	1.76
141942--141981	19	2.1	19	85	4	53	55	0	0	45	0.99
141995--142057	31	2.0	31	87	0	90	42	1	3	52	1.27
148508--148539	15	2.1	15	100	0	64	37	12	6	43	1.68
153494--153542	23	2.1	23	88	7	73	46	2	0	51	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
154298--154442	62	2.3	62	81	9	163	49	7	6	36	1.56
154325--154442	62	1.9	62	86	6	168	50	7	5	36	1.53
154399--154633	63	3.8	63	77	7	228	41	9	8	40	1.69
156717--156750	18	1.9	18	88	5	52	73	0	0	26	0.83
157858--157896	14	2.8	14	76	0	51	56	0	0	43	0.99
161334--161372	15	2.5	16	87	4	53	41	0	0	58	0.98
166318--166346	14	2.1	14	93	6	51	51	0	0	48	1.00
166952--167010	26	2.4	24	77	8	64	52	0	0	47	1.00
173921--173956	19	1.9	18	88	5	54	30	0	22	47	1.52
174146--174189	24	2.0	22	86	13	63	40	22	4	31	1.74
175003--175062	18	3.3	18	73	17	70	26	33	3	36	1.73
175002--175074	36	2.0	36	97	0	137	26	30	5	38	1.79
175055--175126	22	3.1	22	83	11	90	27	23	4	44	1.72
175064--175115	25	2.1	25	100	0	104	26	19	3	50	1.65
181978--182031	26	2.0	27	82	10	67	33	5	53	7	1.52
182599--182644	21	2.2	21	84	7	58	39	0	2	58	1.10
182669--182711	19	2.3	18	81	18	52	65	0	0	34	0.93
184086--184137	21	2.5	21	90	6	79	50	0	0	50	1.00
184086--184137	22	2.5	22	93	6	90	50	0	0	50	1.00
184122--184161	16	2.7	14	88	7	53	55	0	0	45	0.99
184127--184163	8	4.6	8	86	0	56	56	0	0	43	0.99
184124--184171	14	3.3	14	80	11	51	60	0	0	39	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
188649--188678	2	15.0	2	100	0	60	50	0	0	50	1.00
196554--196597	2	22.0	2	85	0	61	43	0	6	50	1.29
203173--203202	15	2.0	15	100	0	60	26	13	6	53	1.64
203508--203556	23	2.1	23	88	7	73	79	4	10	6	1.03
206767--206805	18	2.2	18	90	0	60	61	0	7	30	1.24
206777--206815	18	2.1	19	90	4	62	48	0	5	46	1.24
206842--207113	112	2.4	112	80	10	290	33	9	7	49	1.64
206794--207114	56	5.8	53	73	11	227	33	9	7	50	1.61
206932--207134	112	1.8	110	82	8	259	32	8	9	49	1.66
206931--207158	112	2.1	111	79	10	245	32	9	8	49	1.66
208851--208893	22	2.0	23	86	9	63	34	4	25	34	1.77
209048--209122	18	4.2	18	77	0	69	48	12	16	24	1.79
210007--210057	6	9.0	6	80	18	56	66	0	0	33	0.92
210013--210069	14	4.1	14	93	0	96	68	0	0	31	0.90
210019--210069	8	7.1	8	77	22	60	68	0	0	31	0.90
210013--210069	28	2.0	28	100	0	114	68	0	0	31	0.90
217054--217116	27	2.3	27	79	12	76	20	11	6	61	1.50
217198--217243	23	2.0	23	86	0	65	30	17	13	39	1.87
217392--217417	4	6.5	4	100	0	52	76	0	0	23	0.78
217413--217439	3	9.0	3	100	0	54	66	0	0	33	0.92
223644--223670	2	13.5	2	100	0	54	51	0	0	48	1.00
225942--225994	14	3.7	14	73	12	54	45	3	0	50	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
226048--226087	21	1.9	21	84	0	53	80	0	5	15	0.88
229521--229565	22	2.0	23	83	12	58	40	15	15	28	1.88
236937--236966	2	15.0	2	100	0	60	50	0	50	0	1.00
239700--239759	30	2.0	31	83	9	79	33	16	3	46	1.64
240906--240938	15	2.3	15	89	5	50	66	3	0	30	1.06
240935--240970	16	2.2	16	95	0	63	52	2	5	38	1.39
242332--242379	24	2.0	24	91	0	78	56	2	0	41	1.11
242346--242392	24	2.0	24	83	8	60	57	2	0	40	1.11
242383--242425	15	2.6	17	82	10	54	51	0	4	44	1.22
251478--251510	16	2.0	16	94	5	57	51	0	0	48	1.00
257463--257500	19	2.0	19	85	10	51	65	0	2	31	1.06
258858--258978	58	2.1	58	95	1	217	37	10	4	47	1.60
259026--259093	8	7.8	8	75	23	57	77	1	7	13	1.03
260103--260205	6	16.8	6	72	16	79	77	0	2	18	0.95
260103--260215	28	4.3	26	74	19	92	78	0	3	16	0.93
260050--260198	75	2.0	77	81	10	182	71	2	4	21	1.15
260103--260205	11	9.5	11	75	12	97	77	0	2	18	0.95
260368--260393	7	3.7	7	100	0	52	11	0	0	88	0.52
260401--260766	41	8.8	42	85	5	255	36	21	17	24	1.94
260438--260775	41	8.2	41	88	3	482	36	21	17	24	1.94
270465--270695	58	4.0	58	85	7	333	38	11	4	45	1.60
270508--270542	16	2.2	16	90	5	54	48	0	5	45	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
270742--270809	8	7.8	8	75	23	57	77	1	7	13	1.03
271380--271432	26	2.1	26	89	3	81	58	18	0	22	1.39
271839--271942	17	5.9	18	69	12	74	75	3	1	18	1.04
271908--271956	12	4.2	12	89	7	50	79	4	4	12	1.01
271839--271942	6	17.8	6	72	13	74	75	3	1	18	1.04
275203--275261	23	2.6	22	76	7	64	67	0	13	18	1.22
275889--275997	56	1.9	58	85	7	152	39	11	6	43	1.66
275976--276021	24	1.9	24	95	0	83	43	17	4	34	1.69
275922--276078	80	2.0	81	94	1	280	40	12	6	40	1.69
276000--276215	57	3.7	56	80	10	231	41	11	5	42	1.62

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106