genome.fa.s57.2.7.7.80.10.50.1000.41.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167882.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_15, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22478863

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   

This is table  41  of  106  ( 12717 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7485545--7485586	22	2.0	20	82	17	50	54	2	2	40	1.26
7485644--7485723	23	3.4	23	72	10	72	57	2	2	37	1.26
7486477--7488702	181	12.4	181	78	7	1903	40	8	10	41	1.69
7486479--7488698	361	6.2	359	77	8	1712	40	8	10	41	1.69
7486477--7489700	714	4.5	713	75	10	2000	39	8	9	41	1.69
7489066--7489106	19	2.2	19	86	4	57	39	4	0	56	1.21
7488782--7489705	177	5.2	179	74	8	616	39	8	9	42	1.68
7488782--7489727	357	2.6	355	77	6	876	39	8	9	42	1.68
7490264--7490331	21	3.4	21	74	15	63	55	0	1	42	1.08
7490914--7490980	6	10.8	6	74	17	57	47	0	2	49	1.16
7490914--7490985	19	3.8	19	80	8	76	47	0	2	50	1.15
7490914--7490985	13	5.6	13	75	8	58	47	0	2	50	1.15
7490974--7491023	16	3.2	16	80	8	50	48	4	0	48	1.20
7491792--7491858	23	3.1	22	82	14	70	47	0	0	52	1.00
7492064--7492121	19	3.1	18	82	9	62	48	0	1	50	1.11
7492078--7492135	19	3.1	19	80	14	57	53	1	0	44	1.10
7492774--7493422	176	3.6	176	78	9	559	38	8	11	42	1.70
7494359--7494412	18	3.1	16	80	20	56	51	0	0	48	1.00
7494326--7494385	15	3.8	16	77	18	63	48	0	3	48	1.18
7494327--7494412	14	5.5	15	76	13	59	47	0	2	50	1.14
7494384--7494427	19	2.4	18	81	7	52	52	2	0	45	1.13
7494644--7494698	23	2.5	22	83	13	69	49	0	1	49	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7494741--7494803	27	2.3	26	83	5	72	49	3	3	44	1.34
7494778--7494812	16	2.3	15	90	5	52	54	2	5	37	1.39
7494963--7495015	24	2.2	24	83	9	65	50	1	0	47	1.12
7495397--7495454	29	2.1	26	81	15	64	50	1	1	46	1.22
7495579--7495635	18	3.2	17	78	14	62	52	1	0	45	1.11
7495553--7495665	35	3.3	34	78	14	85	51	3	0	44	1.25
7496124--7496179	23	2.4	24	80	17	64	44	1	1	51	1.22
7496577--7496609	18	1.9	17	88	11	50	42	6	3	48	1.43
7496576--7496627	17	3.0	17	75	13	52	40	7	1	50	1.42
7497478--7497523	22	2.1	23	92	8	78	45	4	0	50	1.21
7497588--7497616	11	2.6	11	100	0	58	51	0	0	48	1.00
7497987--7498049	21	3.0	21	77	15	60	42	6	3	47	1.44
7498075--7498099	13	1.9	13	100	0	50	52	0	8	40	1.31
7498235--7498287	17	3.1	17	76	7	54	43	0	1	54	1.11
7498230--7498285	22	2.6	23	86	8	73	42	0	1	55	1.10
7498297--7498375	31	2.6	29	78	15	79	49	0	2	48	1.14
7498290--7498464	85	2.1	84	79	11	189	49	0	2	46	1.20
7499503--7499541	19	2.1	19	85	9	53	61	0	0	38	0.96
7499719--7499803	15	6.0	14	66	14	50	44	1	1	52	1.16
7499741--7499802	21	2.9	23	79	18	71	45	1	0	53	1.10
7499751--7499831	32	2.5	33	80	13	96	48	2	1	48	1.23
7499959--7500066	17	6.1	17	68	16	58	49	1	1	47	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7500875--7500922	16	3.0	16	80	14	55	39	4	0	56	1.19
7501046--7501086	12	3.2	12	86	10	55	43	0	0	56	0.99
7502437--7502503	16	4.3	16	73	19	61	52	2	0	44	1.16
7502489--7502554	14	4.7	15	73	19	54	50	1	1	46	1.20
7503106--7503181	37	2.1	37	83	9	95	53	1	0	44	1.08
7503328--7503360	14	2.4	14	90	5	50	45	0	0	54	0.99
7503538--7503562	13	1.9	13	100	0	50	52	0	8	40	1.31
7503642--7503694	17	3.1	17	76	7	54	43	0	1	54	1.11
7503639--7503692	22	2.5	22	85	8	67	42	0	1	55	1.10
7504330--7504499	92	1.8	92	81	2	207	43	10	11	34	1.75
7505864--7505894	7	4.3	7	95	4	53	45	0	0	54	0.99
7506325--7506393	36	2.0	34	88	5	102	52	1	5	40	1.34
7506841--7506903	25	2.5	24	80	14	65	46	1	0	52	1.10
7507344--7507393	17	2.9	17	80	13	57	48	0	2	50	1.12
7507348--7507400	18	3.0	18	78	8	56	49	0	1	49	1.12
7507472--7507533	27	2.3	28	86	10	85	51	3	3	41	1.34
7507733--7507777	22	2.1	22	91	4	74	51	2	4	42	1.34
7508660--7508707	23	2.1	23	84	7	62	47	4	0	47	1.21
7509310--7509352	18	2.3	18	84	4	50	44	13	6	34	1.72
7509910--7509974	31	2.2	31	83	8	82	56	0	3	40	1.15
7509930--7509958	11	2.7	11	94	5	51	65	0	0	34	0.93
7510214--7510279	19	3.5	20	76	13	52	50	3	1	45	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7510868--7510896	10	2.7	11	89	10	51	62	0	0	37	0.96
7511243--7511298	26	2.1	27	83	9	71	44	1	0	53	1.11
7511284--7511351	27	2.4	28	73	11	68	36	1	4	57	1.28
7511290--7511349	26	2.3	26	80	8	77	38	1	5	55	1.32
7511304--7511345	13	3.2	13	77	16	50	35	0	4	59	1.19
7511998--7512030	18	1.9	17	88	11	50	48	6	9	36	1.60
7512203--7512267	22	3.0	21	75	14	62	52	3	0	44	1.16
7512439--7512526	23	3.8	23	72	13	65	47	1	4	46	1.30
7512607--7512647	21	1.9	22	85	5	57	39	0	2	58	1.11
7513100--7513169	34	2.1	35	84	12	94	47	4	0	48	1.21
7513420--7513452	18	1.9	17	88	11	50	48	3	6	42	1.43
7513121--7513877	181	4.2	179	75	7	511	42	7	8	40	1.65
7513965--7514001	19	1.9	19	89	10	58	45	0	0	54	1.00
7515402--7516066	181	3.7	178	78	6	583	40	9	8	42	1.66
7516362--7516426	25	2.4	28	75	19	75	56	0	1	41	1.08
7516403--7516437	17	2.1	17	89	10	54	42	2	0	54	1.15
7516662--7516693	14	2.4	14	94	5	57	50	0	0	50	1.00
7516766--7516811	16	2.8	16	93	6	74	50	0	0	50	1.00
7516848--7516901	25	2.2	24	80	6	65	55	1	1	40	1.21
7517451--7517501	15	3.2	15	73	21	50	47	0	3	49	1.20
7519540--7519581	13	3.4	13	77	12	52	50	0	2	47	1.14
7519533--7519583	24	2.1	24	92	0	84	47	1	1	49	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7519656--7519718	26	2.2	29	78	13	69	47	4	1	46	1.33
7519761--7519801	11	3.8	11	83	6	57	43	0	0	56	0.99
7520213--7520281	20	3.6	18	73	21	59	56	5	0	37	1.23
7520316--7520390	29	2.5	30	74	20	77	45	1	1	52	1.17
7520917--7520965	24	2.0	24	85	14	66	46	0	2	51	1.12
7521010--7521051	16	2.5	17	85	14	52	52	2	0	45	1.13
7521137--7521189	19	2.8	18	83	13	63	66	1	0	32	1.03
7521137--7521195	9	6.2	9	76	9	55	64	3	0	32	1.10
7521147--7521204	28	2.0	31	86	10	86	63	1	0	34	1.04
7521207--7521283	25	3.0	25	79	9	84	51	0	1	46	1.09
7521171--7521254	35	2.4	35	77	18	93	53	1	1	44	1.16
7521208--7521268	20	3.1	19	77	13	61	52	0	1	45	1.10
7521195--7521289	12	8.5	11	71	24	58	51	0	3	45	1.17
7521256--7521292	18	2.0	19	89	5	58	51	0	2	45	1.15
7521957--7522049	18	4.9	18	71	16	64	49	1	1	48	1.15
7521957--7522042	17	4.8	18	73	21	67	48	1	1	48	1.16
7521956--7522049	20	4.9	19	72	21	65	48	1	1	48	1.15
7522353--7522430	13	5.6	14	73	14	54	50	1	0	48	1.09
7522367--7522441	20	3.8	20	73	18	66	50	1	0	48	1.09
7522492--7522535	17	2.6	18	80	20	58	52	0	0	47	1.00
7522968--7523030	15	4.1	15	74	20	51	42	3	0	53	1.16
7523617--7524244	180	3.5	177	75	11	554	41	9	8	40	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7523617--7524172	181	3.1	177	78	8	545	42	9	7	40	1.67
7524296--7524358	22	2.9	22	79	13	69	47	3	0	49	1.17
7524317--7524362	20	2.4	19	80	20	51	50	0	0	50	1.00
7525516--7525569	24	2.3	24	82	17	62	42	0	0	57	0.98
7525518--7525569	19	2.5	21	81	15	63	42	0	0	57	0.98
7525662--7525712	19	2.7	18	75	21	50	47	5	0	47	1.26
7525876--7525930	19	2.8	20	82	17	71	40	0	0	60	0.97
7526054--7526100	13	3.5	13	75	13	51	40	0	4	55	1.19
7526048--7526099	27	1.9	27	88	7	79	40	0	3	55	1.18
7526331--7526366	17	2.1	17	89	0	54	52	0	2	44	1.15

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106