genome.fa.s57.2.7.7.80.10.50.1000.85.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167882.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_15, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22478863

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   

This is table  85  of  106  ( 12717 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17158984--17159513	179	3.0	176	78	7	480	39	9	9	41	1.71
17159771--17159839	34	2.0	34	91	0	111	44	11	7	36	1.68
17159017--17160694	931	1.8	928	78	7	1916	39	7	9	42	1.67
17161560--17164329	180	15.4	179	72	9	1268	41	8	9	40	1.68
17162130--17162179	16	2.8	19	74	20	54	44	8	12	36	1.71
17164647--17164687	18	2.4	18	88	8	59	46	9	7	36	1.65
17164429--17165842	717	2.0	722	82	4	1741	39	8	10	41	1.71
17162851--17166299	898	3.9	898	74	9	2014	40	8	10	41	1.70
17166338--17170162	181	21.3	179	76	6	2887	40	10	8	40	1.69
17166346--17170125	361	10.5	359	75	7	2678	40	10	8	40	1.69
17173868--17173895	13	2.2	13	100	0	56	0	7	28	64	1.20
17174733--17175961	181	6.9	180	75	7	824	39	8	10	41	1.69
17174951--17175913	357	2.7	355	77	9	803	39	8	9	42	1.68
17175968--17177595	181	9.1	178	75	7	1165	40	9	8	41	1.67
17177644--17178008	175	2.1	179	79	10	383	38	8	10	41	1.71
17178386--17180064	180	9.4	180	76	7	1148	41	8	9	40	1.67
17178383--17184501	358	17.3	355	72	11	2076	40	8	9	41	1.67
17179930--17180267	158	2.1	159	77	9	334	43	7	6	42	1.59
17180247--17180278	16	1.9	17	93	6	57	37	3	3	56	1.31
17180575--17184464	181	21.9	176	71	12	418	40	8	9	41	1.68
17181044--17184501	181	19.2	180	76	6	2447	40	8	9	41	1.68
17177644--17184501	719	9.7	708	73	11	3604	40	8	9	41	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17180954--17184501	538	6.6	538	78	6	2785	40	8	9	41	1.68
17183715--17183747	17	2.0	17	88	5	50	54	0	6	39	1.25
17184383--17184603	120	1.8	120	86	1	318	47	8	11	33	1.70
17184502--17184841	180	1.9	181	80	7	397	41	10	12	35	1.77
17185093--17185361	139	1.9	139	83	5	346	37	7	9	45	1.65
17185225--17185823	181	3.3	176	78	5	583	39	7	10	42	1.67
17185884--17186023	67	2.1	67	87	0	208	40	9	14	36	1.78
17185981--17189193	181	17.9	181	76	7	2276	40	8	9	41	1.68
17186012--17189193	536	5.9	534	76	7	2348	40	8	9	41	1.67
17186018--17189193	717	4.4	709	76	8	2306	40	8	9	41	1.67
17189076--17189121	17	2.7	18	83	10	60	41	4	8	45	1.55
17189059--17189319	145	1.8	145	85	2	373	39	7	9	44	1.64
17189192--17190658	181	8.2	182	76	8	1236	40	8	9	41	1.69
17190117--17190149	18	1.9	17	88	11	50	48	9	6	36	1.60
17189192--17190653	362	4.1	363	79	7	1394	40	8	9	41	1.69
17190662--17191319	180	3.7	181	76	7	554	36	11	9	42	1.74
17191213--17191433	120	1.8	120	80	5	268	32	12	8	47	1.70
17191440--17191940	170	2.9	171	78	11	448	43	9	6	39	1.65
17191611--17192364	179	4.2	181	78	6	572	42	9	7	40	1.64
17192363--17195494	181	17.5	180	74	9	1163	40	10	9	40	1.71
17192363--17195518	358	8.8	352	75	8	1960	40	10	9	40	1.71
17192363--17215856	541	44.0	535	72	10	9427	41	9	8	40	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17196044--17196955	176	5.1	175	72	10	626	41	10	8	39	1.71
17197103--17197896	179	4.4	178	76	6	492	42	9	7	40	1.66
17196994--17197786	179	4.4	177	75	11	415	40	9	8	41	1.67
17196994--17202304	180	29.7	180	74	8	3094	41	9	8	39	1.69
17199911--17199952	20	2.1	20	82	8	50	57	4	2	35	1.33
17198980--17202281	361	9.2	360	75	8	1993	41	10	8	40	1.69
17202438--17203580	181	6.3	180	74	5	901	42	9	8	40	1.67
17202801--17203136	179	1.9	180	81	4	410	42	8	8	40	1.66
17203598--17207619	181	22.4	180	74	9	2295	42	9	8	39	1.68
17203598--17212979	180	52.4	180	71	11	3839	41	9	8	40	1.68
17205444--17205478	18	2.0	18	94	5	63	77	0	0	22	0.78
17204304--17207621	539	6.1	541	76	7	2203	41	9	8	40	1.69
17207687--17212513	181	26.9	181	73	10	1134	41	9	8	40	1.68
17209671--17217959	357	23.0	359	68	13	2329	41	9	8	40	1.68
17209674--17221735	540	22.4	537	68	14	2311	41	9	8	40	1.68
17213053--17215833	181	15.7	178	70	12	627	41	9	8	40	1.67
17216646--17217369	372	2.0	370	82	4	897	42	10	7	39	1.66
17217262--17217606	174	2.0	174	80	4	392	41	9	7	40	1.67
17217568--17217600	18	1.9	17	88	11	50	42	6	3	48	1.43
17217961--17221735	181	21.0	181	74	8	2407	42	9	7	40	1.67
17218156--17218979	360	2.3	358	79	6	826	43	8	7	40	1.64
17218157--17221737	182	19.9	181	74	8	1822	42	9	7	40	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17220114--17221722	358	4.5	359	76	8	903	42	10	7	39	1.69
17221589--17221626	19	2.0	19	85	10	51	57	0	7	34	1.28
17221589--17221627	20	2.0	19	85	5	51	58	0	7	33	1.26
17221764--17222870	181	6.1	178	74	9	618	42	9	7	40	1.65
17224514--17224548	16	2.1	16	89	5	52	65	5	0	28	1.15
17224533--17224712	58	3.1	58	86	2	265	46	6	10	36	1.65
17228779--17228859	7	11.4	7	67	17	51	75	0	19	4	0.98
17229533--17229707	63	2.8	63	93	1	307	36	9	22	31	1.86
17230116--17230168	21	2.5	21	84	0	70	43	9	9	37	1.70
17230006--17230498	263	1.9	262	85	2	684	35	10	16	36	1.84
17230877--17231079	45	4.6	45	76	7	157	21	11	19	48	1.79
17230779--17231072	42	6.7	43	74	12	176	23	11	18	46	1.82
17230919--17231072	44	3.5	44	78	7	179	22	10	19	48	1.79
17231298--17231329	16	2.0	16	93	0	55	15	0	0	84	0.63
17231287--17231340	23	2.3	24	81	15	69	20	3	0	75	0.95
17232896--17233157	58	4.4	58	80	11	284	40	6	15	37	1.74
17232896--17233157	122	2.2	115	84	11	320	40	6	15	37	1.74
17235965--17236000	16	2.2	18	85	14	51	55	0	2	41	1.14
17233679--17236506	181	15.8	178	73	9	1687	41	9	7	41	1.66
17233679--17236506	360	7.9	356	73	10	1675	41	9	7	41	1.66
17236340--17236657	157	2.0	157	83	2	397	37	8	8	44	1.67
17236552--17237575	182	5.6	182	93	0	1570	41	10	7	40	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17237596--17237983	180	2.2	180	79	7	414	42	9	8	39	1.67
17238045--17238090	16	3.1	15	78	15	60	56	2	0	41	1.11
17238044--17238090	13	3.7	13	77	2	51	55	2	0	42	1.12
17238425--17238484	30	2.0	31	83	9	79	46	3	1	48	1.28
17238501--17238525	11	2.3	11	100	0	50	44	8	0	48	1.32
17238769--17238814	22	2.1	21	88	8	65	50	0	2	47	1.13
17239086--17241481	181	13.2	180	77	5	1885	42	9	7	39	1.67
17239086--17243468	723	6.0	716	74	10	2508	42	9	7	40	1.65
17241579--17241614	16	2.1	17	90	10	56	41	0	2	55	1.14
17241263--17241730	237	1.9	242	81	5	572	44	8	7	40	1.62
17241091--17241877	418	1.9	422	80	6	943	42	9	7	40	1.65
17241575--17243468	181	10.5	180	77	6	1426	41	8	7	42	1.64
17241575--17243472	361	5.3	355	77	6	1587	41	8	7	42	1.64
17243609--17243964	7	50.9	7	74	8	149	35	45	3	14	1.62
17243842--17243911	29	2.4	29	86	6	90	35	54	0	10	1.34
17243885--17243914	15	2.0	15	93	0	51	43	50	0	6	1.28
17243906--17243961	20	2.8	20	89	8	78	35	48	0	16	1.46
17244734--17244842	7	15.4	7	84	5	103	34	43	2	19	1.65
17244734--17244830	50	1.9	50	83	8	126	35	43	3	18	1.66
17244783--17244858	7	10.9	7	88	0	80	32	38	1	27	1.65
17244914--17244965	7	7.3	7	79	12	61	32	40	13	13	1.83
17244914--17244965	21	2.4	22	90	3	79	32	40	13	13	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17245516--17245549	18	1.9	17	88	5	50	38	0	0	61	0.96
17245513--17245581	22	3.0	23	82	14	81	44	0	0	55	0.99
17245513--17245582	24	3.0	24	80	14	76	44	0	0	55	0.99
17245550--17245678	56	2.3	58	79	14	144	55	0	0	44	0.99
17249653--17249685	2	16.5	2	100	0	66	51	0	48	0	1.00
17251481--17251507	2	13.5	2	100	0	54	51	0	0	48	1.00
17251592--17251661	27	2.6	27	79	18	76	48	1	1	48	1.19
17251592--17251658	29	2.3	29	78	19	70	47	1	1	49	1.19
17251615--17251664	13	3.8	13	74	15	50	52	0	0	48	1.00
17251611--17251667	29	2.1	25	87	12	78	49	0	0	50	1.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106