genome.fa.s57.2.7.7.80.10.50.1000.28.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167882.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_15, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22478863

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   

This is table  28  of  106  ( 12717 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5231605--5231667	17	3.7	17	80	6	74	52	6	14	26	1.65
5234273--5234313	21	2.0	20	90	4	64	48	4	12	34	1.62
5234853--5234886	10	3.4	10	87	0	50	17	8	0	73	1.08
5234873--5234919	19	2.6	17	87	9	60	4	10	2	82	0.88
5234878--5234919	17	2.6	16	85	7	57	2	11	2	83	0.84
5239511--5239571	25	2.4	25	83	5	70	36	14	16	32	1.89
5239523--5239574	25	2.1	25	92	0	86	34	13	17	34	1.89
5245254--5245294	21	2.0	21	85	0	55	63	0	9	26	1.25
5252938--5253042	52	2.0	52	98	0	201	49	6	19	24	1.72
5266311--5266380	21	3.4	20	75	15	63	28	30	28	12	1.93
5266437--5267384	472	2.0	473	91	2	1530	31	17	15	36	1.91
5268153--5268211	25	2.4	25	100	0	118	49	3	13	33	1.59
5271828--5271909	40	2.0	40	90	0	128	26	8	34	30	1.86
5277527--5277563	17	2.2	17	90	4	58	45	10	2	40	1.53
5277536--5277568	17	2.0	17	88	5	50	51	9	0	39	1.34
5281933--5281957	2	12.5	2	100	0	50	52	0	0	48	1.00
5283718--5283757	14	2.9	14	88	0	53	5	22	0	72	1.04
5283704--5283757	28	2.0	27	85	10	74	5	22	0	72	1.05
5288416--5288478	32	1.9	32	83	6	81	42	9	3	44	1.52
5288431--5288699	103	2.6	103	82	4	303	40	10	7	41	1.68
5289419--5289470	17	3.2	17	68	15	56	9	19	11	59	1.59
5289409--5289479	31	2.3	31	100	0	142	8	19	8	63	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5296257--5296308	16	3.2	16	88	0	77	28	15	7	48	1.73
5297777--5297906	60	2.2	60	81	6	142	40	13	14	30	1.85
5298377--5298520	60	2.4	60	81	5	157	48	12	9	29	1.71
5299916--5299994	34	2.3	34	86	0	104	30	13	16	39	1.88
5302382--5302454	21	3.6	19	75	21	53	16	28	26	28	1.97
5305828--5306054	116	2.0	115	99	0	445	42	16	6	34	1.73
5306459--5306497	20	2.0	20	89	0	60	43	20	5	30	1.73
5309568--5309638	23	3.2	22	77	13	65	74	5	9	9	1.21
5310056--5310089	15	2.3	15	94	0	59	85	0	11	2	0.71
5310996--5311035	13	3.1	13	88	0	53	80	2	2	15	0.93
5311681--5311725	16	2.8	17	81	18	53	62	0	4	33	1.15
5311682--5311723	17	2.5	17	84	7	50	61	0	4	33	1.17
5311959--5312000	19	2.3	19	87	4	59	73	4	2	19	1.12
5317610--5317634	2	12.5	2	100	0	50	0	48	0	52	1.00
5328159--5328221	32	2.0	32	87	0	90	20	3	28	47	1.65
5328159--5328211	16	3.3	16	79	10	54	18	3	28	49	1.65
5329324--5329369	6	7.7	6	83	11	51	0	2	15	82	0.76
5342229--5342274	20	2.3	20	85	7	58	45	13	15	26	1.82
5345456--5345491	3	12.3	3	94	5	65	0	30	0	69	0.89
5346697--5346934	118	2.0	118	91	0	388	22	23	17	36	1.94
5353471--5353527	8	7.0	8	82	9	71	73	0	14	12	1.09
5353467--5353501	9	4.0	9	92	7	63	77	0	11	11	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5354935--5355007	38	1.9	38	86	5	103	23	10	15	50	1.75
5354930--5355550	43	14.5	43	77	4	448	25	13	18	43	1.85
5354973--5355546	130	4.4	130	81	3	557	25	13	17	43	1.86
5354932--5355550	87	7.2	86	76	6	393	25	13	17	43	1.85
5357289--5357508	117	1.9	116	82	6	275	25	19	21	33	1.97
5358175--5358491	174	1.8	172	85	5	440	41	6	13	38	1.69
5358493--5358599	46	2.3	46	80	4	126	60	6	8	24	1.49
5358582--5358608	14	1.9	14	100	0	54	85	0	0	14	0.61
5360927--5360953	13	2.1	13	100	0	54	11	14	0	74	1.08
5363097--5363131	7	5.0	7	96	0	61	14	40	0	45	1.45
5364573--5364624	21	2.5	22	93	6	90	48	0	0	51	1.00
5364597--5364657	30	2.0	30	83	0	77	54	1	0	44	1.10
5376721--5376813	45	2.1	45	83	4	116	36	11	18	33	1.87
5377546--5377680	66	2.0	66	94	0	234	31	22	14	32	1.93
5395424--5395471	21	2.3	21	100	0	96	35	14	20	29	1.93
5398208--5398271	22	2.9	22	83	9	76	34	4	1	59	1.28
5398217--5398278	21	3.0	21	83	6	65	35	6	1	56	1.35
5398797--5398870	37	2.1	35	82	10	87	60	4	4	31	1.34
5399003--5399045	16	2.6	17	75	10	54	60	4	2	32	1.30
5400006--5400096	44	2.1	43	89	4	139	39	2	13	45	1.55
5400242--5400266	13	1.9	13	100	0	50	76	0	0	24	0.80
5407943--5408007	26	2.5	26	89	2	94	27	15	24	32	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5421502--5421540	19	2.1	19	90	0	60	46	17	10	25	1.80
5422025--5422085	17	3.6	17	77	2	52	54	1	0	44	1.10
5422120--5422193	21	3.5	22	79	3	62	50	4	1	44	1.29
5422168--5422396	41	5.7	40	71	12	171	46	3	2	48	1.30
5422141--5422242	11	9.6	11	64	19	56	48	2	1	47	1.28
5422140--5422413	21	13.3	21	75	8	219	47	2	2	47	1.28
5422375--5422403	12	2.3	13	94	5	51	51	0	0	48	1.00
5422173--5422413	102	2.4	101	78	9	251	46	2	2	48	1.28
5422140--5422420	41	6.8	40	66	22	131	47	2	2	47	1.29
5422351--5422444	29	3.3	29	81	14	106	45	2	2	50	1.25
5422351--5422491	57	2.4	59	81	10	146	44	2	2	51	1.25
5422522--5422590	28	2.4	28	75	2	75	42	4	1	52	1.30
5422648--5422738	30	3.1	28	79	13	87	43	2	1	52	1.20
5422648--5422747	29	3.4	29	80	9	105	45	2	1	52	1.19
5422700--5422748	8	6.5	8	77	13	59	46	0	0	53	1.00
5422685--5422744	22	2.8	22	85	10	63	46	0	1	51	1.10
5422658--5422779	51	2.4	49	82	10	131	43	0	2	53	1.19
5422735--5422790	28	2.0	29	82	10	71	39	0	7	53	1.28
5422807--5422888	27	3.0	27	75	13	78	41	1	0	57	1.06
5422835--5422873	8	4.5	8	82	17	51	41	0	0	58	0.98
5422835--5422886	19	2.9	18	83	13	63	44	0	0	55	0.99
5423785--5423841	29	2.0	29	96	0	105	56	1	1	40	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5423785--5423848	29	2.2	29	91	0	101	53	1	1	43	1.19
5424443--5424472	12	2.4	13	94	5	53	46	0	0	53	1.00
5424769--5424917	71	2.1	69	84	8	187	42	4	6	45	1.51
5424867--5424971	48	2.2	49	78	10	110	37	5	5	51	1.50
5424923--5424974	11	5.0	10	75	9	50	38	7	5	48	1.56
5424922--5424974	21	2.5	21	93	0	88	39	7	5	47	1.56
5425054--5425107	22	2.5	22	75	16	60	38	5	5	50	1.49
5425381--5425517	44	3.1	43	73	11	134	42	7	5	44	1.56
5425485--5425605	22	5.5	22	68	7	75	38	9	6	45	1.62
5425380--5425545	88	1.9	89	82	3	210	39	9	6	44	1.62
5425879--5425936	22	2.5	24	78	15	70	36	12	8	43	1.73
5425852--5425993	44	3.2	42	76	11	117	38	10	4	47	1.58
5426061--5426132	22	3.2	22	82	3	90	37	6	9	45	1.64
5426055--5426172	45	2.6	45	81	5	123	31	7	9	51	1.62
5426442--5426497	22	2.5	22	88	0	67	41	12	3	42	1.60
5426464--5426610	22	6.7	22	67	13	72	38	8	6	46	1.62
5426645--5426731	22	4.1	22	70	8	63	41	8	4	45	1.54
5426718--5426768	21	2.3	23	80	12	63	29	3	7	58	1.44
5426875--5427020	65	2.2	66	76	1	150	37	8	4	48	1.56
5426815--5426998	22	8.5	22	73	4	86	36	8	6	47	1.60
5426875--5427125	22	11.7	22	74	10	110	37	9	5	48	1.59
5427717--5427757	6	6.8	6	100	0	82	68	14	0	17	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5427793--5428208	59	7.0	57	82	10	471	34	11	7	46	1.69
5428216--5428287	7	10.3	7	74	18	53	80	1	1	16	0.85
5428216--5428282	14	4.7	14	80	10	73	80	1	1	16	0.86
5428216--5428253	20	1.9	20	88	0	58	78	0	0	21	0.74
5428216--5428302	6	14.3	6	75	17	65	78	1	2	18	0.93
5428223--5428313	27	3.6	24	76	16	78	76	1	2	19	0.95
5428226--5428313	17	5.4	16	76	17	65	77	1	2	19	0.94
5429203--5429240	17	2.2	17	90	9	60	55	7	10	26	1.61
5429300--5429344	22	1.9	22	82	13	54	64	2	0	33	1.06
5429618--5429658	1	41.0	1	85	0	55	0	0	7	92	0.38

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106