genome.fa.s57.2.7.7.80.10.50.1000.88.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167882.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_15, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22478863

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   

This is table  88  of  106  ( 12717 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17886855--17886881	6	4.5	6	100	0	54	81	0	0	18	0.69
17886983--17887042	22	2.7	22	79	10	59	46	0	0	53	1.00
17886983--17887100	26	4.6	26	71	17	68	47	0	0	51	1.06
17887005--17887091	26	3.4	27	70	17	71	49	0	1	49	1.08
17887058--17887106	26	1.9	25	91	4	80	53	0	0	46	1.00
17892308--17892342	17	2.1	17	88	0	52	31	14	14	40	1.86
17892851--17892946	37	2.6	36	73	14	97	46	0	1	52	1.07
17892966--17893005	11	3.5	11	83	6	53	30	0	0	70	0.88
17900555--17900620	34	1.9	34	93	0	114	31	18	18	31	1.95
17910315--17910348	15	2.1	17	89	10	54	32	0	2	64	1.08
17912501--17912544	23	1.9	23	90	0	70	18	9	13	59	1.60
17912677--17912722	17	2.6	18	80	12	60	50	0	0	50	1.00
17912677--17912716	18	2.2	18	86	8	55	52	0	0	47	1.00
17920599--17920644	11	4.0	11	81	10	56	32	2	0	65	1.05
17931870--17931972	6	17.2	6	82	4	118	59	0	35	4	1.19
17931872--17932001	15	8.5	15	76	14	77	55	3	36	4	1.39
17932918--17932982	27	2.4	27	84	5	78	7	24	38	29	1.83
17935715--17935751	11	3.4	11	84	0	56	62	2	2	32	1.23
17954696--17954730	16	2.2	17	90	10	56	42	2	0	54	1.15
17967623--17967676	6	9.0	6	91	0	81	20	31	0	48	1.50
17971123--17971155	2	16.5	2	100	0	66	0	48	0	51	1.00
17982381--17982417	16	2.2	17	90	4	58	51	0	8	40	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17982461--17982517	26	2.2	26	84	6	71	36	3	0	59	1.14
17982532--17982558	2	13.5	2	100	0	54	51	0	0	48	1.00
17992426--17992465	2	20.0	2	89	0	62	47	5	0	47	1.24
17998502--17998544	23	1.9	22	86	13	61	37	9	0	53	1.33
17999338--17999377	21	1.9	21	85	10	55	30	22	0	47	1.52
18000022--18000050	8	3.8	8	95	4	51	86	0	0	13	0.58
18012227--18012257	8	3.9	8	95	0	53	61	0	38	0	0.96
18013057--18013136	41	1.9	42	94	2	144	43	12	12	31	1.80
18013057--18013156	41	2.4	41	86	6	123	43	10	11	36	1.74
18013457--18013490	2	17.0	2	100	0	68	50	0	0	50	1.00
18016443--18016474	2	16.0	2	100	0	64	50	0	0	50	1.00
18021181--18021220	2	21.0	2	85	10	57	45	0	55	0	0.99
18023025--18023087	31	2.0	31	93	0	108	42	14	4	38	1.66
18028120--18028159	22	1.9	21	85	10	55	55	0	2	42	1.13
18031378--18031662	137	2.1	136	92	3	475	27	12	15	44	1.83
18037740--18037855	59	2.0	59	85	0	160	43	5	11	40	1.63
18039566--18039625	25	2.5	24	84	12	79	46	0	0	53	1.00
18039676--18039745	17	3.7	18	77	18	63	55	1	0	42	1.08
18039688--18039740	22	2.5	22	81	12	65	56	1	0	41	1.10
18046612--18046682	29	2.4	29	81	9	81	52	2	1	43	1.24
18046690--18046730	16	2.5	17	76	11	50	46	0	0	53	1.00
18048618--18048683	24	2.7	25	81	9	73	56	0	0	43	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18051569--18051622	19	2.8	18	78	10	63	51	0	0	48	1.00
18056850--18056884	18	1.9	18	94	0	61	42	0	8	48	1.33
18058120--18058146	5	5.4	5	100	0	54	18	0	0	81	0.69
18061912--18061945	14	2.5	14	85	4	52	55	0	0	44	0.99
18062588--18062646	12	4.4	13	73	21	50	55	0	1	42	1.09
18062589--18062643	29	1.9	28	85	3	74	54	0	1	43	1.10
18062585--18062645	28	2.2	28	80	8	72	54	0	1	44	1.10
18062872--18063182	163	1.9	164	91	0	516	46	9	4	38	1.58
18066118--18066145	7	4.0	7	100	0	56	28	28	28	14	1.95
18070499--18070543	17	2.6	16	83	13	54	55	0	0	44	0.99
18070982--18071044	21	3.0	21	80	0	81	28	15	6	49	1.69
18071061--18071101	20	2.0	20	90	0	64	29	21	2	46	1.64
18071004--18071165	83	2.0	83	86	0	225	33	16	5	45	1.70
18072544--18072603	2	31.5	2	73	9	54	41	3	1	53	1.27
18072533--18072603	36	2.0	34	83	5	88	39	4	1	54	1.28
18072561--18072607	11	4.2	12	76	20	57	40	2	0	57	1.11
18072823--18072863	21	2.0	20	90	4	64	41	0	2	56	1.13
18074566--18074592	9	3.0	9	100	0	54	55	0	0	44	0.99
18075947--18075975	3	9.7	3	100	0	58	34	0	31	34	1.58
18094316--18094365	7	6.6	7	90	9	64	58	18	0	24	1.40
18103941--18104118	92	1.9	94	89	2	279	50	14	10	24	1.75
18113165--18113221	24	2.4	23	85	11	71	50	3	7	38	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18113845--18113886	14	3.0	14	76	10	50	59	0	0	40	0.97
18116663--18116715	18	2.8	18	74	5	52	56	0	1	41	1.10
18118282--18118320	18	2.1	19	95	4	71	56	0	0	43	0.99
18118485--18118539	24	2.2	24	87	3	83	50	0	0	49	1.00
18119382--18119461	38	2.1	38	81	4	90	43	5	5	46	1.47
18119440--18119481	11	3.9	11	81	3	50	47	0	0	52	1.00
18119441--18119479	16	2.4	16	83	8	53	48	0	0	51	1.00
18124134--18124172	2	19.5	2	89	0	60	46	0	5	48	1.24
18125564--18125958	58	6.6	57	76	14	341	38	10	5	45	1.63
18125743--18125839	30	3.2	29	71	16	81	43	10	3	43	1.54
18125566--18125950	61	6.4	59	77	13	338	38	10	5	45	1.62
18125824--18125865	18	2.3	19	80	12	52	35	2	2	59	1.23
18125956--18126057	9	10.9	9	73	22	61	72	4	0	21	1.09
18125965--18126013	15	3.1	15	75	16	53	81	2	0	16	0.78
18125971--18126010	20	2.0	20	85	5	53	80	2	0	17	0.83
18126033--18126082	24	2.1	24	85	7	66	78	2	2	18	0.95
18126030--18126084	27	2.0	27	82	6	67	78	1	1	18	0.94
18126933--18126994	22	2.9	21	81	11	65	67	4	3	24	1.25
18127079--18127138	5	11.8	5	77	13	52	81	1	1	15	0.85
18127094--18127166	25	3.0	23	80	11	74	78	2	2	16	0.99
18127076--18127164	6	15.0	6	73	17	53	79	2	3	14	0.95
18127071--18127140	11	6.2	11	79	15	72	78	1	2	17	0.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18127081--18127166	31	2.8	31	80	16	83	79	2	3	15	0.98
18127329--18127501	42	4.1	42	89	2	233	35	21	16	25	1.95
18128497--18128542	16	3.0	15	84	6	56	10	6	0	82	0.83
18128510--18128541	8	3.9	8	95	4	55	9	3	0	87	0.64
18138998--18139138	68	2.1	67	80	10	162	41	12	7	39	1.69
18139133--18139287	81	1.9	78	83	11	190	39	11	5	43	1.65
18139342--18139460	4	29.8	4	72	22	67	74	3	1	20	1.04
18139347--18139413	11	6.2	11	77	19	70	82	0	1	16	0.75
18139347--18139464	26	4.6	26	69	18	95	75	3	0	20	1.00
18139342--18139464	51	2.4	53	80	15	141	74	3	1	20	1.04
18139341--18139410	33	2.1	33	87	10	99	80	0	2	17	0.84
18139336--18139464	47	2.8	45	81	14	133	74	3	2	20	1.06
18139750--18139793	15	2.9	16	80	10	56	0	54	0	45	0.99
18156203--18156231	3	9.7	3	100	0	58	65	0	34	0	0.93
18158096--18158143	24	2.0	24	87	0	69	43	2	8	45	1.45
18177823--18177926	35	2.9	36	73	11	97	46	0	0	52	1.07
18177929--18177965	16	2.4	16	86	4	58	32	0	0	67	0.91
18190086--18190152	32	2.1	32	82	0	80	44	1	1	52	1.19
18190092--18190192	38	2.6	38	80	9	107	47	2	0	49	1.16
18196857--18196883	14	1.9	14	100	0	54	37	14	11	37	1.82
18197838--18197875	15	2.6	15	83	4	51	28	2	7	60	1.38
18202670--18202735	28	2.3	28	78	14	73	39	3	0	57	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18203877--18203926	14	3.4	14	78	10	55	40	0	2	58	1.10
18203879--18203940	30	2.1	30	84	0	79	43	0	1	54	1.09
18203913--18203962	21	2.4	21	93	3	84	52	2	0	46	1.12
18205721--18205776	28	2.0	29	82	3	69	57	3	1	37	1.27
18211552--18211610	27	2.2	27	90	3	93	28	8	0	62	1.24
18213595--18213670	25	3.2	24	78	9	75	53	1	0	44	1.08
18215820--18215954	69	2.0	68	84	4	175	22	13	42	21	1.88
18216511--18216552	12	3.9	11	76	17	52	52	2	0	45	1.13
18216538--18216613	31	2.8	26	76	19	82	55	2	2	39	1.28
18216546--18216613	31	2.2	30	89	5	109	57	2	2	36	1.29

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106