genome.fa.s57.2.7.7.80.10.50.1000.51.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167882.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_15, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22478863

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   

This is table  51  of  106  ( 12717 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8950725--8950788	14	4.5	14	75	11	67	62	0	32	4	1.16
8950728--8950785	19	3.0	19	76	2	62	58	0	36	5	1.20
8961291--8961427	62	2.2	62	81	0	148	32	13	10	44	1.77
8962320--8962404	25	3.4	25	80	4	100	27	10	20	42	1.84
8965549--8965625	35	2.2	35	83	0	100	37	18	7	36	1.80
8966569--8966604	14	2.6	14	90	0	54	36	33	11	19	1.87
8967970--8968009	19	2.1	19	100	0	80	27	10	15	47	1.77
8968074--8968160	43	2.0	43	95	0	156	25	21	21	31	1.98
8974575--8974609	17	2.1	17	88	0	52	77	14	0	8	0.99
8977043--8977083	17	2.4	17	95	0	73	78	7	9	4	1.10
8977756--8977815	28	2.1	28	81	0	66	23	0	8	68	1.16
8977762--8977817	16	3.5	16	74	13	53	23	0	8	67	1.18
8977825--8977862	19	2.0	19	94	0	67	65	0	0	34	0.93
8983271--8983331	32	1.9	32	86	0	86	45	9	4	39	1.59
8983372--8983421	17	3.1	17	75	21	61	54	0	0	46	1.00
8986791--8986891	10	10.3	9	72	16	60	55	4	3	35	1.40
8987007--8987052	20	2.4	19	89	7	67	60	6	0	32	1.22
8987009--8987047	10	3.9	10	83	12	53	58	7	0	33	1.26
8987098--8987162	20	3.6	17	78	12	51	50	4	0	44	1.22
8987098--8987138	20	2.0	21	95	4	75	41	4	0	53	1.22
8987102--8987145	20	2.2	20	83	0	52	52	6	0	40	1.28
8987119--8987169	15	3.2	15	86	10	66	56	3	0	39	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8987348--8987452	26	3.9	26	69	18	72	30	3	7	58	1.44
8987518--8987570	8	6.5	8	75	12	54	45	0	7	47	1.31
8987623--8987658	19	1.9	18	88	5	54	33	0	13	52	1.41
8987827--8987874	10	4.8	10	75	10	53	45	0	2	52	1.12
8990270--8990315	18	2.7	18	76	6	51	41	0	0	58	0.98
8990785--8990818	11	3.1	11	86	0	50	14	2	2	79	0.97
8990882--8990920	12	2.9	14	81	14	55	74	7	0	17	1.05
8990892--8990933	12	3.5	12	90	9	68	76	9	0	14	1.02
8990893--8990965	22	3.2	23	80	7	78	78	8	2	10	1.07
8990893--8990941	23	2.1	22	88	7	71	77	8	0	14	0.98
8990923--8990977	22	2.4	22	82	11	58	81	5	7	5	0.97
8992029--8992250	40	5.6	40	74	8	177	40	18	14	27	1.89
8992077--8992250	79	2.2	81	86	6	257	40	17	14	27	1.89
8991968--8992250	39	7.1	39	75	8	189	39	17	14	28	1.89
9004454--9004499	17	2.6	19	80	16	55	17	2	6	73	1.14
9004579--9004656	6	12.8	6	77	8	59	76	5	6	11	1.12
9004578--9004644	25	2.7	25	83	2	82	76	5	4	13	1.13
9004603--9004656	25	2.2	24	83	3	63	79	1	9	9	1.00
9009505--9009564	27	2.2	27	96	0	111	61	10	6	21	1.50
9010411--9010452	20	2.1	20	86	0	57	42	2	2	52	1.27
9010945--9010995	23	2.2	24	86	10	70	27	7	3	60	1.42
9010933--9010995	23	2.6	25	75	19	69	26	9	4	58	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9011868--9011897	15	2.0	15	93	0	51	30	6	10	53	1.60
9011880--9011920	21	2.0	21	90	0	64	24	4	14	56	1.58
9019083--9019166	35	2.4	35	81	0	96	20	10	14	54	1.69
9019138--9019301	35	4.8	34	77	15	124	20	15	10	53	1.72
9019192--9019304	35	3.2	35	84	0	154	19	14	11	54	1.69
9019192--9019331	70	2.0	70	83	2	174	21	16	10	52	1.73
9019258--9019512	105	2.4	105	79	6	275	18	15	13	52	1.74
9019192--9019512	35	9.2	34	70	8	144	18	15	13	52	1.74
9019403--9019576	70	2.5	70	81	3	181	17	14	12	55	1.70
9019460--9019591	70	1.9	71	80	1	158	18	14	12	53	1.72
9019604--9019653	21	2.3	22	86	3	66	16	10	12	62	1.55
9019626--9019815	35	5.4	35	76	6	159	17	15	13	53	1.74
9019664--9019851	35	5.3	35	75	8	139	17	17	13	52	1.74
9019463--9019783	164	2.0	164	82	3	396	17	14	13	54	1.71
9022357--9022407	15	3.2	17	75	13	54	54	17	0	27	1.43
9022537--9022654	7	17.3	7	68	18	79	45	38	1	14	1.55
9022517--9022572	27	2.1	27	86	0	76	53	28	0	17	1.44
9022542--9022665	18	6.5	19	76	11	94	44	37	1	16	1.57
9022576--9022694	18	6.4	17	77	15	96	42	39	2	15	1.61
9022504--9022736	20	12.5	19	71	17	71	45	34	1	18	1.59
9022707--9022766	30	2.0	30	87	6	86	51	26	0	21	1.48
9022817--9022865	12	4.0	12	78	2	53	44	34	2	18	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9022504--9022838	19	17.1	20	68	17	93	46	33	1	18	1.59
9025005--9025030	1	26.0	1	100	0	52	100	0	0	0	0.00
9029516--9029557	18	2.4	18	84	11	52	64	2	0	33	1.07
9029583--9029611	11	2.5	12	88	11	51	48	0	0	51	1.00
9040248--9040333	43	2.0	43	90	4	138	44	5	9	40	1.61
9045399--9045445	24	2.0	24	87	8	69	23	0	2	74	0.93
9046574--9046634	21	2.9	21	90	4	88	13	0	13	73	1.09
9046603--9046697	12	7.8	12	70	10	68	13	5	10	70	1.31
9051396--9051429	11	3.1	11	86	0	50	79	2	14	2	0.97
9051840--9051920	10	7.6	10	84	13	60	72	0	14	12	1.11
9051841--9051921	11	7.4	12	81	10	70	74	0	13	12	1.08
9052959--9053101	62	2.3	62	85	3	189	28	23	9	38	1.86
9052941--9053428	63	7.7	63	72	10	171	26	22	11	40	1.87
9052941--9053434	126	3.9	125	74	10	380	25	21	11	40	1.87
9053423--9053525	32	3.2	31	80	5	107	14	24	16	44	1.85
9053410--9053525	32	3.6	33	77	8	103	14	23	14	47	1.81
9053956--9054006	6	8.2	6	79	16	59	17	0	3	78	0.90
9053956--9054010	18	3.1	18	80	15	69	18	0	3	78	0.90
9053953--9054016	20	3.4	18	76	16	60	20	0	3	76	0.92
9053953--9054020	12	5.7	11	78	11	64	20	0	2	76	0.92
9054729--9054769	20	2.0	20	95	0	73	17	31	14	36	1.90
9054735--9054779	20	2.2	20	84	0	54	20	33	15	31	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9055100--9055268	8	20.5	8	69	8	63	15	3	6	74	1.16
9055129--9055272	4	35.5	4	70	10	78	17	2	6	73	1.16
9055132--9055216	34	2.5	33	82	14	95	18	1	5	74	1.09
9055132--9055227	13	7.5	13	72	8	63	16	1	6	76	1.05
9063929--9063962	13	2.8	12	86	8	50	26	0	0	73	0.83
9063922--9063963	19	2.3	18	91	4	66	23	0	0	76	0.79
9063923--9063962	6	6.7	6	88	11	55	25	0	0	75	0.81
9063932--9063976	19	2.3	20	81	11	58	28	2	0	68	1.01
9067795--9067831	5	7.6	5	90	6	58	18	2	0	78	0.87
9067796--9067831	14	2.5	14	95	4	63	19	2	0	77	0.88
9067795--9067831	19	1.9	19	94	0	65	18	2	0	78	0.87
9071319--9071357	3	12.7	3	94	5	69	66	0	0	33	0.92
9071491--9071568	30	2.6	29	77	20	81	47	25	0	26	1.52
9071595--9071649	21	2.6	22	88	5	78	50	32	1	14	1.53
9072845--9072877	11	2.7	13	86	13	52	21	0	0	78	0.75
9072844--9072879	18	2.1	17	89	5	54	22	0	0	77	0.76
9073364--9073399	10	3.6	10	84	0	54	44	0	0	55	0.99
9073857--9073899	18	2.4	18	84	0	59	48	11	16	23	1.78
9073919--9073980	28	2.2	28	97	0	115	54	8	14	22	1.66
9073964--9073998	18	1.9	18	100	0	70	45	11	20	22	1.82
9074103--9074170	28	2.4	28	73	4	75	76	13	2	7	1.11
9074246--9074286	21	1.9	22	85	14	59	26	4	24	43	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9075258--9075291	12	2.8	12	81	0	50	70	5	0	23	1.09
9075258--9075305	25	2.0	25	87	4	71	70	6	2	20	1.19
9081600--9081645	18	2.6	18	82	0	56	52	0	0	47	1.00
9081669--9081715	22	2.1	22	84	0	58	38	0	2	59	1.09
9086789--9086849	28	2.2	28	82	11	72	54	0	0	45	1.00
9099429--9099461	8	4.2	8	84	7	50	84	0	3	12	0.72
9099453--9099503	11	4.6	11	78	9	50	72	0	5	21	1.05
9100557--9100597	20	2.0	20	100	0	82	36	19	4	39	1.73
9110603--9110929	178	1.8	178	83	1	431	22	22	15	40	1.90
9110791--9111026	117	2.0	117	82	4	289	24	23	13	38	1.90

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106