genome.fa.s57.2.7.7.80.10.50.1000.52.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167882.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_15, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22478863

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   

This is table  52  of  106  ( 12717 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9111375--9111420	3	15.7	3	95	4	85	30	0	0	69	0.89
9112374--9112422	18	2.9	16	82	14	62	81	0	4	14	0.83
9112440--9112527	42	2.1	42	85	4	115	14	29	21	34	1.93
9118827--9118865	7	5.7	7	87	6	53	76	7	0	15	0.99
9118825--9118857	13	2.5	13	90	0	57	75	9	0	15	1.03
9119902--9120020	62	1.9	62	81	3	141	38	1	20	39	1.62
9120319--9120487	86	2.0	85	81	5	198	34	4	18	42	1.70
9120933--9120989	25	2.2	25	78	9	62	42	5	10	42	1.62
9121924--9121967	24	1.9	23	86	9	63	75	4	13	6	1.17
9123681--9124035	62	5.8	63	76	10	231	45	7	7	40	1.59
9123681--9124035	122	2.9	121	78	9	364	45	7	7	40	1.59
9124002--9124150	43	3.7	40	78	7	167	41	6	10	41	1.65
9124475--9124525	26	2.0	26	84	0	66	50	5	0	43	1.26
9127619--9127647	2	14.5	2	100	0	58	51	0	0	48	1.00
9132038--9134429	598	4.0	598	95	0	4193	38	16	12	33	1.85
9141487--9141561	36	2.1	36	97	0	141	44	16	8	32	1.76
9142243--9142299	6	9.3	6	78	17	64	49	0	0	50	1.00
9143279--9143335	27	2.1	27	93	0	96	43	15	1	38	1.57
9143456--9143566	44	2.5	44	77	4	116	41	1	5	51	1.35
9146044--9146087	17	2.5	17	81	7	52	15	2	4	77	1.04
9146068--9146147	34	2.3	34	79	10	90	25	3	1	70	1.12
9147086--9147117	15	2.1	16	94	5	57	6	21	0	71	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9149290--9149368	16	4.9	16	78	7	88	49	32	1	16	1.54
9149288--9149394	33	3.3	33	76	10	103	49	30	2	16	1.60
9149290--9149368	32	2.4	33	85	6	108	49	32	1	16	1.54
9149290--9149380	16	5.6	16	78	7	67	49	31	2	16	1.58
9152615--9152642	11	2.5	11	100	0	56	92	0	7	0	0.37
9153704--9153848	61	2.4	61	80	4	150	21	16	8	53	1.70
9153872--9154053	66	2.7	67	83	5	201	18	19	13	48	1.80
9153957--9154166	112	1.9	112	81	7	257	19	24	12	44	1.85
9154063--9154232	66	2.6	66	78	0	162	19	25	11	43	1.84
9154523--9154575	17	3.1	17	72	5	52	33	20	15	30	1.93
9154514--9154893	86	4.3	88	76	9	328	31	18	13	35	1.90
9154606--9154927	172	1.9	172	85	2	450	31	19	13	35	1.90
9154605--9154929	86	3.8	86	76	4	332	31	19	13	35	1.90
9155926--9156023	51	1.9	51	91	0	160	36	10	11	41	1.75
9156402--9156435	18	1.9	18	94	5	61	58	23	0	17	1.38
9156881--9156931	25	2.1	24	85	3	66	25	3	0	70	1.04
9159363--9159469	43	2.4	43	79	4	106	38	1	7	52	1.41
9162711--9162736	12	2.2	12	100	0	52	76	0	0	23	0.78
9162707--9162738	17	1.9	17	93	6	57	78	0	0	21	0.76
9164123--9164149	2	13.5	2	100	0	54	51	0	0	48	1.00
9165101--9165153	13	3.9	13	82	7	52	77	0	5	16	0.96
9169273--9169305	17	1.9	17	93	0	57	27	9	0	63	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9171901--9171934	14	2.4	14	86	13	52	82	0	2	14	0.79
9176264--9176435	53	3.2	53	77	12	181	55	7	7	29	1.55
9176425--9176472	24	2.0	24	91	0	78	54	6	6	33	1.51
9176382--9176526	78	1.8	78	84	7	186	51	6	8	33	1.60
9179890--9180099	107	2.0	106	84	6	273	45	6	9	38	1.62
9187637--9187665	10	3.0	10	95	5	51	6	10	0	82	0.83
9188702--9188727	9	2.9	9	100	0	52	92	0	7	0	0.39
9194439--9194484	5	9.4	5	88	9	53	19	0	2	78	0.86
9194439--9194484	11	4.7	10	82	17	53	19	0	2	78	0.86
9194439--9194484	17	2.6	17	78	21	51	19	0	2	78	0.86
9194495--9194539	3	15.7	3	81	9	58	66	4	0	28	1.11
9194536--9194585	12	4.2	12	84	7	66	72	8	0	20	1.10
9194536--9194589	24	2.3	26	78	21	73	70	9	0	20	1.14
9194486--9194585	36	2.9	35	77	14	91	70	6	0	24	1.10
9194566--9194624	20	3.0	19	78	14	66	77	8	0	13	0.97
9194581--9194624	19	2.3	19	88	0	61	81	6	0	11	0.86
9194489--9194623	6	21.8	6	70	19	55	72	6	0	20	1.07
9195410--9195447	3	12.7	3	100	0	76	68	0	0	31	0.90
9195601--9195918	40	8.1	39	79	2	289	42	19	11	26	1.86
9195601--9195918	79	4.1	78	82	3	307	42	19	11	26	1.86
9195672--9195894	77	2.8	79	89	4	335	40	20	12	26	1.88
9196045--9196168	39	3.1	40	82	4	160	44	20	12	21	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9209453--9209482	12	2.5	12	94	0	51	10	6	3	80	1.01
9209498--9209535	3	12.7	3	100	0	76	68	0	0	31	0.90
9218324--9218467	50	2.8	49	81	12	148	54	4	13	28	1.57
9218342--9218467	50	2.4	50	84	5	153	55	3	14	26	1.56
9218483--9218682	48	4.1	48	79	7	199	51	6	17	26	1.68
9218494--9218682	97	2.0	96	84	5	247	51	5	17	25	1.67
9218668--9218799	37	3.5	39	75	12	125	53	8	14	23	1.67
9218695--9218877	37	5.0	36	72	12	124	50	7	14	27	1.69
9218855--9219010	36	4.3	36	75	8	122	49	6	16	28	1.70
9218708--9218983	107	2.5	109	77	12	266	51	6	14	27	1.67
9218708--9218946	36	6.6	35	72	10	128	52	6	13	27	1.65
9224108--9224150	4	10.8	4	100	0	86	25	0	23	51	1.49
9224191--9224233	21	2.2	19	83	8	50	23	0	9	67	1.19
9228218--9228243	2	13.0	2	100	0	52	50	0	0	50	1.00
9233906--9233963	22	2.8	21	80	17	68	55	0	0	44	0.99
9233917--9233966	23	2.3	21	83	16	66	58	0	0	42	0.98
9237959--9238003	21	2.1	22	83	4	56	46	8	2	42	1.47
9238294--9238325	14	2.3	14	94	0	55	50	3	15	31	1.60
9238488--9238531	20	2.2	20	84	4	54	22	0	25	52	1.48
9238593--9238683	19	4.8	19	76	0	83	25	1	32	40	1.63
9240170--9240500	143	2.3	142	79	6	355	42	10	8	38	1.70
9243575--9243628	20	2.7	20	91	0	90	38	3	9	48	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9243740--9243794	16	3.8	16	66	26	50	45	1	1	50	1.22
9243732--9243796	26	2.6	25	86	11	89	49	1	1	47	1.20
9243932--9243979	20	2.4	21	79	10	55	47	2	2	47	1.25
9243961--9244000	16	2.5	17	84	15	59	45	2	0	52	1.14
9243941--9244018	37	2.1	38	83	7	97	43	1	1	53	1.16
9243977--9244018	22	1.9	22	85	9	59	42	2	0	54	1.13
9244184--9244261	36	2.2	36	81	9	88	48	1	1	48	1.17
9244203--9244267	29	2.2	30	83	2	78	47	1	3	47	1.27
9245394--9245499	53	2.0	53	100	0	212	28	18	16	35	1.93
9246125--9246406	123	2.3	124	82	5	331	37	14	15	32	1.88
9246177--9246616	123	3.6	120	75	10	342	40	14	14	30	1.85
9246324--9246450	62	2.0	63	81	3	150	44	12	17	25	1.83
9246446--9246845	184	2.2	185	81	5	477	40	13	12	33	1.81
9247669--9247713	21	2.1	21	87	0	63	48	6	17	26	1.72
9257512--9258451	187	5.0	185	77	7	891	41	10	11	36	1.75
9257512--9258451	373	2.5	370	83	4	1149	41	10	11	36	1.75
9265645--9265697	21	2.6	21	78	3	63	49	15	18	16	1.80
9266912--9266962	14	3.6	14	78	19	52	74	3	0	21	0.98
9268523--9268569	21	2.2	21	84	0	58	51	10	0	38	1.37
9268522--9268659	22	6.4	21	75	9	109	48	7	4	39	1.51
9268533--9268748	44	4.9	44	75	9	172	45	7	6	40	1.58
9268917--9268960	21	2.1	21	87	4	63	40	2	20	36	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9269046--9269124	32	2.5	32	84	10	101	45	10	16	27	1.79
9269046--9269120	31	2.4	31	84	10	91	46	10	16	26	1.79
9269415--9269506	44	2.1	45	84	10	118	42	9	9	38	1.71
9271091--9271156	29	2.3	27	82	14	80	4	15	0	80	0.87
9271101--9271149	25	1.9	26	87	4	73	2	16	0	81	0.78
9271098--9271149	12	4.4	11	79	15	59	1	15	0	82	0.75
9273223--9273310	46	2.0	44	82	8	106	62	4	2	30	1.27
9273303--9273336	17	1.9	18	88	5	52	47	5	0	47	1.26
9273535--9273574	21	1.9	21	84	0	53	30	0	7	62	1.23
9273728--9273773	17	2.7	16	83	12	56	36	0	4	58	1.18

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106