genome.fa.s57.2.7.7.80.10.50.1000.27.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167882.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_15, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22478863

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   

This is table  27  of  106  ( 12717 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5031486--5031627	28	5.1	27	68	15	92	43	3	2	50	1.34
5043279--5043337	25	2.4	24	86	8	75	6	11	1	79	0.99
5043279--5043337	24	2.4	25	85	2	75	6	11	1	79	0.99
5045236--5045266	16	1.9	16	93	0	53	38	19	6	35	1.77
5047316--5047353	3	12.3	3	84	15	51	31	0	0	68	0.90
5048546--5048594	25	1.9	25	87	4	71	48	0	0	51	1.00
5048558--5048649	28	3.5	25	72	16	71	45	2	3	48	1.30
5049238--5049263	13	2.0	13	100	0	52	30	23	0	46	1.53
5055641--5055673	17	1.9	17	88	11	50	12	15	3	69	1.30
5056141--5056183	3	14.3	3	95	0	77	67	2	0	30	1.03
5063205--5063278	34	2.2	34	79	13	82	28	20	9	41	1.83
5063659--5063840	73	2.5	72	80	7	206	24	20	20	33	1.97
5064611--5064648	17	2.2	17	90	0	58	47	13	10	28	1.76
5064990--5065036	19	2.8	17	76	17	53	6	25	0	68	1.13
5069223--5069278	28	2.0	27	86	3	76	7	12	3	76	1.11
5069599--5069638	21	1.9	21	100	0	80	50	0	12	37	1.41
5077813--5077853	2	21.0	2	95	5	75	0	51	0	48	1.00
5084488--5084523	18	2.0	18	100	0	72	44	11	16	27	1.82
5084691--5084735	17	2.6	17	86	6	56	51	6	15	26	1.68
5098502--5098531	15	2.0	15	93	0	51	23	13	10	53	1.69
5101612--5101695	40	2.1	39	84	2	105	30	16	13	39	1.87
5102112--5102159	16	3.4	14	81	13	55	85	6	0	8	0.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5102112--5102151	15	2.6	15	85	14	55	82	7	0	10	0.84
5103658--5103705	16	3.1	15	79	8	51	70	0	0	29	0.87
5113743--5113780	20	2.0	20	84	5	51	36	5	0	57	1.21
5126694--5126719	3	8.7	3	100	0	52	65	0	0	34	0.93
5126988--5127012	13	1.9	13	100	0	50	0	8	0	92	0.40
5132192--5132226	15	2.3	15	90	0	52	28	5	0	65	1.15
5132223--5132261	3	13.0	3	100	0	78	66	0	0	33	0.92
5134241--5137470	805	4.0	807	92	1	5289	44	12	19	23	1.85
5145306--5145353	14	3.3	15	85	8	64	81	12	6	0	0.87
5146343--5146453	50	2.2	50	92	6	181	30	11	18	38	1.87
5146431--5146478	23	2.0	24	96	4	89	37	6	12	43	1.68
5146381--5146525	73	2.0	74	89	4	222	33	9	17	39	1.82
5146343--5146576	123	1.9	123	86	1	335	34	10	17	37	1.84
5146466--5146649	50	3.6	51	82	5	205	35	10	16	36	1.84
5147295--5147667	143	2.6	145	81	5	425	34	11	11	43	1.77
5157348--5157380	13	2.6	13	95	4	59	87	0	0	12	0.53
5158018--5158081	22	3.2	22	64	25	59	25	12	15	46	1.81
5158015--5158090	38	2.0	38	94	0	134	26	11	14	47	1.79
5159459--5159498	20	2.0	20	90	4	64	25	5	7	62	1.42
5160994--5161045	20	2.6	20	71	0	59	48	17	13	21	1.81
5161145--5161177	12	2.7	12	95	4	57	24	27	0	48	1.51
5168700--5168733	13	2.5	14	90	4	52	2	38	0	58	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5169797--5169832	18	2.0	18	94	0	63	41	36	0	22	1.54
5172568--5172594	2	13.5	2	100	0	54	51	0	48	0	1.00
5173147--5173185	20	2.0	20	89	0	60	38	5	0	56	1.22
5173326--5173350	13	1.9	13	100	0	50	76	0	0	24	0.80
5173768--5173806	20	2.0	20	89	0	60	46	0	0	53	1.00
5173927--5173972	20	2.2	21	84	3	58	52	2	6	39	1.40
5175702--5175794	32	3.0	29	80	13	114	62	8	3	25	1.39
5175891--5175972	18	4.4	18	76	16	62	78	4	6	10	1.09
5175910--5175955	14	3.4	13	85	8	65	84	8	0	6	0.77
5176879--5176908	11	2.7	11	94	0	51	66	10	0	23	1.21
5177173--5177215	22	2.0	22	90	0	68	39	16	9	34	1.80
5177275--5177317	18	2.4	19	80	11	54	62	11	11	13	1.54
5177375--5177431	30	1.9	29	89	3	87	50	3	12	33	1.57
5177404--5177490	19	4.7	18	73	13	70	51	9	10	28	1.66
5177441--5177490	9	5.6	9	77	17	50	54	12	8	26	1.64
5177519--5177816	45	6.7	44	76	11	214	46	12	6	34	1.67
5177645--5177842	23	8.8	22	71	11	98	47	11	4	36	1.59
5177628--5177918	90	3.2	90	76	6	277	45	10	6	36	1.66
5177652--5177939	23	12.8	23	71	11	96	45	11	5	36	1.65
5177599--5177955	67	5.3	67	77	6	244	45	11	7	35	1.69
5183629--5183661	14	2.3	15	90	10	52	54	15	6	24	1.63
5183636--5183766	55	2.4	55	77	8	133	57	9	5	28	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5183896--5183946	17	3.2	17	76	21	56	78	3	3	13	1.03
5183933--5183958	11	2.4	11	100	0	52	84	7	0	7	0.77
5184126--5184183	27	2.1	27	84	12	75	12	24	10	53	1.68
5184957--5184986	11	2.7	11	94	0	51	66	10	0	23	1.21
5185571--5185611	3	13.7	3	100	0	82	68	0	0	31	0.90
5187629--5187682	17	2.9	20	76	23	64	55	0	0	44	0.99
5187661--5187700	18	2.2	17	86	8	53	57	0	2	40	1.12
5187659--5187701	19	2.3	18	84	4	59	58	0	2	39	1.11
5187732--5187959	23	9.7	23	69	18	123	43	0	1	53	1.14
5187749--5187938	15	13.5	15	69	22	101	44	1	1	52	1.17
5187737--5187916	18	9.9	18	72	18	85	44	1	1	52	1.18
5187749--5187938	38	5.2	37	71	16	139	44	1	1	52	1.17
5187806--5187937	56	2.5	51	78	17	144	43	0	2	53	1.13
5187802--5187968	26	6.5	25	75	19	139	43	0	1	54	1.10
5187829--5187965	69	2.0	70	85	7	190	44	0	1	54	1.09
5187802--5187959	56	3.1	50	76	18	137	43	0	1	54	1.11
5188484--5188535	26	2.0	26	100	0	104	42	23	11	23	1.86
5189105--5189142	8	4.8	8	90	9	60	10	10	0	78	0.95
5189086--5189183	33	2.9	33	75	13	85	7	16	1	75	1.07
5189145--5189187	22	2.0	22	81	9	52	6	20	2	69	1.23
5189608--5189661	21	2.6	21	80	8	67	1	14	0	83	0.73
5189612--5189661	26	1.9	26	88	8	75	2	16	0	82	0.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5194366--5194418	26	2.0	26	82	10	63	37	1	7	52	1.41
5195154--5195192	20	2.0	20	89	0	60	33	10	28	28	1.90
5195738--5195770	11	2.9	12	82	17	52	21	0	0	78	0.75
5197439--5197541	17	5.9	17	70	11	57	24	0	2	71	1.05
5197439--5197541	47	2.2	47	80	11	113	24	0	2	71	1.05
5197454--5197543	23	3.8	24	79	15	96	24	1	3	71	1.08
5197445--5197543	6	16.5	6	70	12	60	24	1	3	71	1.06
5197735--5197813	41	1.9	41	92	0	131	56	6	8	27	1.54
5203303--5203343	7	5.9	7	97	0	73	58	9	0	31	1.31
5205605--5205694	33	2.7	33	89	0	126	52	20	7	20	1.70
5205672--5205709	13	2.8	14	96	4	69	55	23	2	18	1.55
5205672--5205716	13	3.4	13	84	6	54	55	26	2	15	1.52
5205711--5205767	27	2.0	29	87	12	84	42	26	8	22	1.83
5205731--5205824	19	4.8	21	76	7	74	38	29	8	23	1.84
5205783--5205858	19	3.9	19	75	3	71	42	28	9	19	1.82
5205760--5205833	38	1.9	38	83	5	96	39	29	9	21	1.85
5205921--5205964	16	2.8	16	89	3	63	81	2	0	15	0.78
5205928--5205965	8	4.8	8	84	9	51	86	2	0	10	0.66
5206643--5206693	5	10.2	5	84	16	54	23	0	1	74	0.92
5206639--5206690	4	12.2	4	84	11	52	23	0	1	75	0.91
5206643--5206693	9	5.7	9	75	15	52	23	0	1	74	0.92
5206639--5206693	30	2.0	30	86	13	82	23	0	1	74	0.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5220564--5220597	11	3.0	11	91	4	50	23	0	11	64	1.26
5221374--5221412	20	2.0	20	84	0	51	23	10	5	61	1.48
5222112--5222147	16	2.2	17	90	9	58	38	5	5	50	1.49
5222169--5222297	67	1.9	67	84	7	170	37	3	4	53	1.40
5222310--5222339	15	2.0	15	93	0	51	43	3	0	53	1.17
5222365--5222398	13	2.5	13	95	4	59	41	0	0	58	0.98
5225294--5225334	20	2.0	20	86	9	57	63	2	19	14	1.41
5226788--5226832	1	45.0	1	100	0	90	0	0	0	100	0.00
5229139--5229163	13	1.9	13	100	0	50	28	0	0	72	0.86
5231616--5231667	17	3.1	17	88	2	79	51	7	11	28	1.65

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106