genome.fa.s57.2.7.7.80.10.50.1000.34.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167882.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_15, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22478863

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   

This is table  34  of  106  ( 12717 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6320989--6321028	18	2.2	18	86	8	55	57	0	0	42	0.98
6321308--6321389	41	2.0	41	88	4	121	48	1	1	48	1.17
6321880--6321924	22	2.0	23	91	4	74	26	11	13	48	1.75
6324215--6324249	17	2.1	16	94	5	61	11	17	5	65	1.43
6324211--6324251	16	2.7	15	85	14	57	12	17	7	63	1.50
6328817--6329297	119	4.0	121	80	7	472	35	10	12	41	1.77
6328817--6329338	238	2.2	238	79	7	551	35	9	12	41	1.77
6336063--6336107	22	2.0	23	91	4	74	31	6	22	40	1.80
6339610--6339641	16	1.9	17	93	6	57	31	0	0	68	0.90
6346416--6346454	20	2.0	20	85	10	53	25	5	15	53	1.62
6346447--6346764	116	2.7	115	83	4	379	32	14	15	38	1.87
6346779--6346820	22	1.9	22	95	0	75	35	21	11	30	1.90
6346621--6346965	156	2.2	161	78	8	386	35	14	14	35	1.87
6347140--6347315	23	7.8	22	69	12	90	33	20	7	38	1.80
6347180--6347221	21	1.9	23	85	9	61	30	16	11	40	1.85
6347118--6347315	22	8.8	23	71	12	90	33	19	7	38	1.80
6347304--6347353	24	2.1	24	84	0	64	24	12	8	56	1.62
6347275--6347363	22	3.9	23	74	11	76	28	14	6	50	1.68
6348253--6348316	20	3.3	19	82	10	67	12	1	6	79	0.98
6348250--6348315	7	10.3	6	81	12	53	13	1	6	78	1.00
6348253--6348298	7	6.7	7	85	5	67	13	2	2	82	0.85
6348417--6348491	36	2.1	36	89	0	114	26	6	8	58	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6348454--6348504	24	2.1	25	85	3	68	23	5	7	62	1.44
6348535--6348603	35	1.9	35	83	13	88	23	5	11	59	1.53
6349689--6349752	24	2.6	25	74	18	62	70	0	10	18	1.16
6354448--6354490	19	2.3	18	84	4	50	60	0	30	9	1.28
6354737--6354776	19	2.0	20	90	4	64	17	10	7	65	1.46
6364436--6364478	18	2.3	19	84	11	54	62	9	2	25	1.37
6395013--6395037	13	1.9	13	100	0	50	32	0	0	68	0.90
6395928--6396026	16	6.5	15	67	15	51	75	6	7	11	1.17
6396500--6396531	16	1.9	17	93	6	57	53	21	0	25	1.46
6396845--6396887	22	2.0	22	85	0	59	74	2	0	23	0.93
6396833--6396879	16	3.0	16	84	3	60	70	4	2	23	1.16
6396904--6396981	14	5.3	14	73	21	63	65	2	7	24	1.32
6397943--6397984	15	2.8	16	82	10	52	69	9	2	19	1.28
6399475--6399810	58	5.7	58	78	9	292	37	11	5	44	1.65
6402137--6402174	4	9.2	4	88	5	58	21	0	2	76	0.91
6402280--6402345	26	2.6	27	83	7	68	42	6	7	43	1.57
6406075--6406138	26	2.4	27	79	7	78	79	1	10	7	0.99
6406081--6406122	20	2.1	20	90	0	66	83	0	7	9	0.81
6407528--6407745	109	2.0	108	88	0	319	33	7	15	43	1.75
6407528--6407745	22	10.0	22	83	2	262	33	7	15	43	1.75
6407530--6407748	43	5.0	43	83	2	233	34	7	15	42	1.75
6408277--6408337	31	2.0	31	90	0	95	40	9	11	37	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6408283--6408396	41	2.4	49	75	23	136	39	8	14	36	1.78
6408282--6408341	15	3.9	16	79	14	72	41	8	11	38	1.72
6408345--6408397	19	2.9	18	80	5	70	37	9	15	37	1.79
6408388--6408444	15	3.9	15	75	9	55	29	8	17	43	1.79
6408484--6408835	43	8.2	43	80	5	322	24	13	18	43	1.86
6408495--6408832	87	4.0	85	79	5	301	24	13	18	44	1.85
6410527--6410573	21	2.4	20	89	10	71	10	8	0	80	0.89
6410556--6410591	13	2.8	13	86	0	54	16	0	2	80	0.83
6420804--6420829	11	2.4	11	100	0	52	38	23	11	26	1.89
6426510--6426551	3	14.3	3	95	5	77	35	30	0	33	1.58
6426512--6426552	20	2.0	20	100	0	82	34	29	0	36	1.58
6427264--6427322	14	4.2	14	69	16	50	69	6	1	22	1.21
6427240--6427323	28	2.9	29	74	10	75	71	8	1	19	1.18
6428176--6428229	3	18.7	3	83	14	69	70	0	3	25	1.04
6428145--6428303	9	17.1	9	72	21	59	69	3	3	23	1.17
6428185--6428284	25	3.6	26	72	24	73	68	3	5	24	1.24
6428203--6428303	52	1.9	52	81	15	120	69	2	4	22	1.22
6438354--6438452	45	2.4	41	77	12	112	10	23	8	58	1.57
6439902--6439935	12	3.0	12	87	12	54	0	0	11	88	0.52
6439992--6440306	105	3.0	105	80	3	348	32	16	15	34	1.91
6440588--6440628	18	2.3	18	91	0	64	36	12	21	29	1.90
6440873--6441077	100	2.1	98	83	1	257	36	13	19	31	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6441277--6441381	43	2.4	45	82	3	133	32	10	20	37	1.86
6443232--6443275	18	2.4	18	85	7	54	11	4	2	81	0.92
6444266--6444295	2	15.0	2	100	0	60	50	0	0	50	1.00
6444934--6444967	18	1.9	17	88	5	50	8	8	0	82	0.85
6451573--6451597	11	2.3	11	100	0	50	76	0	0	24	0.80
6451854--6451983	42	3.3	37	80	11	116	10	17	6	65	1.44
6451854--6451963	42	2.7	42	83	9	124	10	18	7	64	1.46
6452643--6452708	35	1.9	34	84	9	89	65	1	3	30	1.17
6452653--6452710	13	4.1	14	80	10	57	65	1	1	31	1.13
6454971--6455026	27	2.1	25	81	15	60	78	3	3	14	1.02
6455071--6455105	18	1.9	18	94	0	61	28	25	14	31	1.95
6457822--6457961	61	2.2	61	82	3	163	40	9	18	31	1.82
6459369--6459444	22	3.5	22	70	20	68	35	15	9	39	1.80
6459369--6459466	44	2.2	44	85	7	128	37	16	8	37	1.78
6460933--6460984	26	2.0	26	92	0	86	42	0	7	50	1.31
6464391--6464426	3	12.3	3	88	5	56	72	0	0	27	0.85
6470520--6470585	24	3.2	20	75	21	64	53	4	0	42	1.21
6472235--6472312	31	2.5	30	82	11	95	33	7	1	57	1.35
6473480--6473538	30	2.0	30	89	0	91	49	1	11	37	1.50
6473903--6473936	2	17.0	2	100	0	68	50	0	0	50	1.00
6474807--6474838	2	16.0	2	100	0	64	50	0	0	50	1.00
6475507--6475572	26	2.6	25	78	7	69	48	0	4	46	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6475514--6475572	26	2.3	26	85	5	75	49	0	3	47	1.18
6475567--6475621	20	2.7	20	77	5	56	50	0	0	49	1.00
6475973--6476030	19	3.1	19	68	9	55	55	0	1	43	1.10
6476145--6476192	25	1.9	25	83	8	62	56	0	0	43	0.99
6478822--6478864	14	3.0	14	86	3	59	65	0	20	13	1.27
6478822--6478859	7	5.4	7	96	0	58	68	0	18	13	1.21
6490332--6490426	36	2.7	36	82	8	122	43	17	7	31	1.77
6490538--6490576	19	2.1	18	90	4	60	48	20	5	25	1.70
6492401--6492578	73	2.4	73	76	6	173	26	19	23	30	1.98
6497707--6497749	18	2.4	18	96	0	77	51	16	16	16	1.77
6501383--6501424	15	2.8	15	88	0	66	16	7	28	47	1.73
6501385--6501429	15	3.0	15	86	0	63	17	6	28	46	1.73
6514166--6514582	132	3.2	129	76	12	410	45	8	7	38	1.63
6514229--6514617	129	3.0	130	84	6	515	45	9	7	37	1.65
6514229--6514747	256	2.0	259	82	5	633	44	8	8	37	1.66
6518005--6518056	18	2.8	18	79	2	59	51	32	0	15	1.43
6519715--6520971	130	9.6	133	80	5	1112	37	7	8	46	1.61
6519715--6520990	527	2.4	527	84	3	1629	38	7	8	46	1.61
6519715--6520984	131	9.7	131	80	5	1186	38	7	8	46	1.61
6521217--6521242	2	13.0	2	100	0	52	50	0	0	50	1.00
6522831--6522919	8	10.2	8	70	20	54	77	1	3	17	0.97
6522832--6522905	31	2.6	28	80	14	87	77	1	1	20	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6522832--6522905	29	2.6	28	77	10	78	77	1	1	20	0.92
6522832--6522906	27	2.7	28	78	13	84	76	1	1	21	0.94
6522830--6522905	11	6.9	11	67	21	52	76	1	1	21	0.94
6523688--6523842	3	56.0	3	71	17	113	58	2	3	35	1.30
6523688--6523837	43	3.5	44	77	13	150	58	2	3	35	1.28
6523716--6523848	11	12.4	11	77	11	91	55	2	5	36	1.35
6523697--6523855	14	10.9	14	74	17	85	55	3	5	35	1.37
6524167--6524631	112	4.1	112	73	4	321	40	14	22	23	1.90
6536231--6536270	19	2.1	19	85	4	53	77	0	5	17	0.94
6537047--6537207	3	59.3	3	68	19	86	55	3	4	36	1.37

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106