genome.fa.s57.2.7.7.80.10.50.1000.81.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167882.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_15, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22478863

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   

This is table  81  of  106  ( 12717 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16166144--16166190	23	2.0	23	84	8	60	44	2	4	48	1.34
16166706--16166762	21	2.7	20	72	22	53	28	1	1	68	1.09
16177643--16177669	2	13.5	2	100	0	54	48	0	0	51	1.00
16182334--16182401	31	2.2	30	82	12	77	13	19	5	61	1.51
16183504--16183547	23	1.9	23	90	0	70	31	0	9	59	1.29
16183516--16183583	11	5.8	12	75	14	52	41	0	4	54	1.20
16183700--16183752	13	4.0	13	78	11	54	64	3	0	32	1.12
16193483--16193537	28	1.9	28	92	3	92	32	12	18	36	1.88
16195165--16195251	42	2.1	42	100	0	174	21	19	32	26	1.97
16199032--16199091	5	11.6	5	77	19	61	60	1	1	36	1.17
16199172--16199245	32	2.3	32	81	2	87	47	1	1	50	1.18
16201180--16201230	12	4.5	12	76	20	56	39	0	0	60	0.97
16201179--16201226	20	2.4	20	96	0	87	39	0	0	60	0.97
16201294--16201370	36	2.1	37	82	4	93	58	5	1	35	1.29
16201803--16201863	32	1.9	32	82	0	77	45	1	3	49	1.28
16217410--16217450	11	4.0	11	81	18	52	48	0	0	51	1.00
16217411--16217475	10	6.4	11	77	19	61	53	0	0	46	1.00
16217412--16217479	19	3.5	20	80	18	72	55	0	0	44	0.99
16217429--16217466	11	3.1	13	81	14	53	63	0	0	36	0.95
16218694--16219205	262	2.0	261	90	1	803	42	18	8	31	1.79
16220991--16221024	17	2.0	17	88	11	52	5	35	0	58	1.22
16222617--16222671	28	2.0	28	88	0	83	40	10	7	41	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16224232--16224273	2	21.0	2	95	0	75	52	0	0	47	1.00
16226388--16226482	47	2.0	47	97	0	181	26	26	9	37	1.87
16226944--16226978	18	1.9	18	100	0	70	22	34	5	37	1.78
16226967--16227032	32	2.1	32	100	0	132	30	18	12	39	1.87
16227214--16227258	22	2.0	22	82	0	54	35	20	11	33	1.88
16227297--16227382	42	2.0	42	93	0	145	54	20	2	22	1.56
16241163--16241201	3	13.0	3	94	0	69	30	0	2	66	1.05
16247654--16247686	17	1.9	17	93	0	57	48	0	0	51	1.00
16247657--16247686	15	2.0	15	93	0	51	50	0	0	50	1.00
16257263--16257287	11	2.3	11	100	0	50	60	12	0	28	1.32
16260611--16260651	20	2.0	20	90	0	64	34	26	4	34	1.78
16273956--16273992	18	2.1	18	90	10	58	27	0	0	72	0.84
16274364--16274419	27	2.1	27	100	0	112	30	7	7	55	1.54
16274442--16274511	13	5.6	12	71	18	54	50	0	1	48	1.09
16276325--16276370	18	2.6	18	82	0	65	45	6	6	41	1.56
16276631--16276752	8	13.9	9	69	20	55	72	5	4	17	1.19
16276678--16276752	4	18.0	4	71	13	53	72	1	5	21	1.13
16276692--16276746	25	2.2	25	90	6	85	74	1	1	21	1.01
16276981--16277224	41	6.0	41	80	9	264	47	19	8	25	1.77
16276986--16277224	82	2.9	81	84	3	309	47	18	8	25	1.77
16277002--16277224	123	1.8	123	88	3	342	47	18	8	25	1.77
16277726--16277770	20	2.2	21	88	4	65	28	13	15	42	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16277531--16277835	79	3.8	79	84	2	378	31	15	12	40	1.85
16277805--16277844	21	1.9	21	100	0	80	40	17	0	42	1.49
16277805--16277867	21	2.9	22	86	11	78	39	17	3	39	1.66
16279157--16279206	10	5.1	10	79	13	59	8	16	0	76	1.02
16284537--16284585	17	2.7	19	81	12	66	69	8	10	12	1.37
16284601--16284665	4	17.2	4	76	17	52	73	3	1	21	1.05
16284601--16284665	7	8.6	8	77	15	52	73	3	1	21	1.05
16286555--16286586	12	2.7	12	100	0	64	65	0	0	34	0.93
16286771--16286826	18	3.0	18	84	5	58	44	1	0	53	1.11
16295296--16295323	10	2.8	10	100	0	56	71	17	0	10	1.14
16299804--16299841	2	19.0	2	94	0	67	47	0	0	52	1.00
16299925--16299964	8	4.6	8	87	12	53	57	2	2	37	1.26
16300000--16300024	2	12.5	2	100	0	50	48	0	0	52	1.00
16300925--16301062	70	2.1	63	77	16	138	36	7	18	36	1.81
16308698--16308761	33	2.0	32	81	9	76	45	12	3	39	1.58
16313237--16313291	22	2.6	21	73	18	60	47	14	0	38	1.45
16314902--16315037	71	1.9	71	84	3	184	35	5	26	32	1.81
16330453--16330508	24	2.3	25	84	3	69	51	3	0	44	1.18
16330759--16330806	20	2.5	20	86	3	71	39	2	0	58	1.10
16331395--16331429	17	1.9	19	88	11	56	45	0	0	54	0.99
16332157--16332185	2	14.5	2	100	0	58	48	0	0	51	1.00
16332808--16332847	9	4.3	9	87	6	62	85	0	5	10	0.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16332808--16332847	19	2.2	18	90	4	62	85	0	5	10	0.75
16333620--16333664	20	2.3	19	85	7	63	20	0	11	68	1.19
16333661--16333690	12	2.5	12	94	0	51	10	0	10	80	0.92
16333698--16333726	3	9.7	3	100	0	58	31	0	0	68	0.89
16333816--16333853	3	12.7	3	100	0	76	68	0	0	31	0.90
16334372--16334453	40	2.0	40	83	0	101	37	9	17	35	1.82
16346144--16346377	80	2.9	79	76	1	234	26	12	17	43	1.85
16346144--16346375	40	5.8	39	79	3	196	26	12	17	43	1.85
16346544--16346770	120	1.9	120	84	1	303	26	12	14	45	1.81
16346578--16346843	80	3.4	78	82	6	258	25	13	16	44	1.84
16346538--16346841	40	7.8	40	76	7	212	26	13	15	44	1.83
16346745--16346875	34	3.7	34	77	16	124	26	14	18	40	1.89
16346705--16346841	73	1.9	74	90	4	224	26	13	18	42	1.86
16346705--16346865	73	2.2	74	86	7	222	28	13	17	40	1.87
16347019--16347135	39	3.0	40	72	7	103	29	11	14	43	1.81
16347354--16347431	3	25.7	3	92	2	111	33	5	0	61	1.18
16348370--16348432	3	21.3	3	93	3	110	33	0	1	65	1.03
16357499--16357529	3	10.3	3	92	0	53	67	0	0	32	0.91
16360830--16360866	10	3.5	11	82	17	51	32	0	8	59	1.27
16361291--16361330	3	13.3	3	94	0	71	30	0	2	67	1.04
16361291--16361370	9	8.8	9	87	2	70	20	0	12	67	1.22
16361329--16361354	3	8.7	3	100	0	52	0	0	30	69	0.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16370823--16370902	41	2.0	41	92	0	133	45	13	16	25	1.84
16373322--16373383	24	2.6	24	87	7	90	53	11	3	32	1.53
16373462--16373830	55	6.7	54	77	10	329	53	11	6	27	1.62
16373640--16373734	23	3.8	23	74	23	84	54	10	6	28	1.59
16373651--16373715	32	1.9	32	87	9	94	55	9	7	27	1.59
16373634--16373737	22	5.3	20	66	27	62	53	10	5	29	1.58
16373662--16373831	32	5.7	31	68	19	112	54	11	7	27	1.62
16373817--16373924	24	4.8	24	72	14	95	54	12	3	28	1.55
16373873--16373923	25	2.0	25	85	7	68	58	11	1	27	1.44
16373934--16373971	20	2.0	18	90	10	58	47	10	7	34	1.67
16374583--16374617	18	1.9	18	100	0	70	74	2	0	22	0.95
16374601--16374627	14	1.9	14	100	0	54	74	0	0	25	0.83
16378167--16378191	2	12.5	2	100	0	50	52	48	0	0	1.00
16394669--16394703	18	1.9	18	88	0	52	68	0	5	25	1.11
16397774--16397885	37	3.0	36	83	7	127	32	16	15	36	1.89
16397777--16397885	38	2.9	36	81	9	121	33	15	15	35	1.89
16409383--16409439	20	2.9	20	80	12	73	0	47	0	52	1.00
16409405--16409436	9	3.6	9	91	0	55	0	40	0	59	0.97
16426669--16426708	3	13.3	3	100	0	80	32	0	0	67	0.91
16426928--16427012	18	4.3	20	72	18	63	61	0	4	34	1.17
16426942--16426988	13	3.9	12	89	8	69	65	0	0	34	0.93
16426941--16426989	11	4.2	11	87	10	62	67	0	0	32	0.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16426941--16426997	12	4.7	12	82	10	62	64	0	1	33	1.04
16433752--16433805	20	2.6	20	75	16	56	59	0	0	40	0.98
16433728--16433820	45	2.0	46	82	10	111	53	0	0	46	1.00
16434018--16434187	86	2.0	86	90	0	268	23	24	18	32	1.97
16449953--16449993	20	2.0	21	86	9	59	36	0	4	58	1.20
16461221--16461269	24	2.0	24	84	0	62	42	2	6	48	1.39
16479717--16479741	12	2.1	12	100	0	50	52	0	0	48	1.00
16480292--16480329	18	2.1	18	85	9	51	34	10	7	47	1.67
16484403--16484442	2	20.0	2	89	0	62	50	5	0	45	1.23
16484403--16484438	14	2.6	14	100	0	72	50	5	0	44	1.25

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106