genome.fa.s57.2.7.7.80.10.50.1000.18.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167882.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_15, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22478863

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   

This is table  18  of  106  ( 12717 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3057798--3057828	15	2.1	15	93	0	53	29	6	25	38	1.81
3058693--3058738	22	2.0	23	83	4	58	19	15	6	58	1.58
3058810--3058859	13	3.9	13	80	15	68	0	10	6	84	0.79
3060394--3060446	22	2.4	22	100	0	106	37	0	9	52	1.34
3062477--3062550	33	2.2	33	79	13	80	10	8	37	43	1.69
3063541--3063659	61	2.0	60	93	1	202	45	10	8	35	1.70
3072247--3072293	25	2.0	25	87	8	71	48	2	0	48	1.13
3074592--3074644	28	1.9	28	92	3	90	45	7	33	13	1.71
3074904--3074935	15	2.1	15	100	0	64	46	0	12	40	1.42
3080616--3080649	13	2.6	13	85	0	50	50	0	14	35	1.44
3081559--3081599	3	13.7	3	94	0	73	0	0	29	70	0.87
3081556--3081614	9	6.6	9	86	0	55	8	0	22	69	1.15
3082040--3082076	19	1.9	19	94	0	65	21	10	27	40	1.86
3082042--3082083	19	2.2	19	86	0	57	21	11	23	42	1.86
3087754--3087802	9	5.4	9	81	18	66	22	2	0	75	0.90
3087757--3087825	13	4.9	13	80	18	68	24	4	0	71	1.05
3087754--3087804	17	2.9	16	80	13	57	23	1	0	74	0.92
3087749--3087802	27	2.1	24	90	10	81	24	1	0	74	0.92
3089231--3089369	70	2.0	70	91	1	226	51	10	3	33	1.54
3089369--3089465	21	4.3	21	68	23	63	42	8	3	46	1.49
3089395--3089429	18	1.9	18	100	0	70	45	5	5	42	1.51
3091976--3092043	35	1.9	35	82	5	84	26	11	5	55	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3101198--3101266	17	4.5	15	71	21	54	46	2	4	46	1.37
3101209--3101286	17	5.0	16	69	21	58	48	1	5	44	1.32
3101191--3101296	45	2.4	45	98	0	203	49	1	5	43	1.37
3101302--3101369	29	2.4	30	76	13	74	50	1	1	47	1.19
3101919--3101968	22	2.3	22	89	0	73	48	6	18	28	1.71
3101919--3101977	22	2.7	22	81	0	55	50	8	15	25	1.71
3104823--3104864	21	2.0	21	85	0	57	30	9	21	38	1.85
3108256--3109351	319	3.4	314	79	6	999	31	9	15	43	1.79
3108244--3109419	161	7.3	161	76	6	914	31	9	15	43	1.79
3112622--3112826	107	1.9	105	94	2	356	44	8	12	34	1.72
3122504--3122560	25	2.3	24	84	3	69	31	8	12	47	1.72
3130246--3130286	12	3.2	14	80	19	54	36	12	29	21	1.90
3130246--3130291	24	1.9	24	91	8	76	39	13	26	21	1.90
3132126--3132179	24	2.3	22	76	17	54	46	1	1	50	1.23
3132217--3132241	3	8.3	3	100	0	50	32	0	0	68	0.90
3135684--3135727	3	14.7	3	100	0	88	31	0	0	68	0.90
3139815--3139865	23	2.3	22	83	10	59	49	0	7	43	1.32
3142153--3142272	33	3.7	33	78	14	133	52	2	0	45	1.14
3142160--3142220	5	11.6	5	73	16	52	49	1	0	49	1.10
3142170--3142415	23	10.2	23	68	21	123	52	3	1	42	1.26
3142175--3142417	132	1.8	131	81	11	287	53	3	1	41	1.26
3142175--3142392	15	14.5	15	68	17	114	53	4	0	41	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3142153--3142267	18	7.2	15	69	23	67	53	2	0	44	1.14
3142464--3142527	18	3.4	18	77	12	58	48	0	0	51	1.00
3142502--3142542	16	2.7	15	85	7	55	48	2	0	48	1.14
3142512--3142561	26	2.0	25	96	4	91	52	2	0	46	1.12
3142502--3142562	15	4.2	16	69	25	55	47	1	0	50	1.10
3142773--3142816	22	2.1	20	83	8	52	40	0	0	59	0.98
3150813--3150856	18	2.5	18	88	3	63	34	9	11	45	1.72
3150813--3150861	18	2.8	17	84	6	62	34	8	12	44	1.71
3150805--3150901	17	5.7	17	78	3	79	37	11	13	38	1.81
3150857--3150901	16	2.8	16	82	3	54	40	13	15	31	1.86
3151014--3151113	16	6.1	16	69	4	56	36	16	17	31	1.91
3151015--3151100	33	2.6	33	79	3	102	39	15	17	27	1.89
3151030--3151083	17	3.2	17	72	15	58	48	14	14	22	1.81
3151227--3151331	46	2.3	47	80	6	117	36	12	13	38	1.82
3152596--3152641	9	5.6	8	85	10	58	13	10	0	76	1.03
3152596--3152641	15	2.8	16	78	15	58	13	10	0	76	1.03
3152579--3152641	8	7.1	9	77	13	60	14	12	0	73	1.11
3153529--3153572	23	2.0	23	86	4	63	52	9	4	34	1.54
3160313--3160511	66	3.0	66	94	1	337	32	14	15	38	1.87
3169242--3169291	23	2.2	23	82	3	66	48	0	6	46	1.27
3172572--3172600	2	14.5	2	100	0	58	0	48	0	51	1.00
3175592--3175623	6	5.7	6	96	3	50	84	0	0	15	0.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3178628--3178662	2	18.0	2	94	5	63	51	0	0	48	1.00
3179305--3179357	22	2.4	22	93	6	90	49	0	0	50	1.00
3181901--3181944	23	1.9	23	86	9	63	25	18	15	40	1.90
3182008--3182041	16	2.1	16	88	0	50	52	2	0	44	1.16
3183769--3183801	16	1.9	18	88	11	52	18	30	3	48	1.63
3193124--3193168	18	2.5	17	82	10	54	77	2	17	2	0.97
3193123--3193168	11	3.9	12	81	10	51	78	2	17	2	0.96
3202994--3203022	12	2.5	12	94	5	51	58	6	27	6	1.50
3203700--3203740	21	2.0	21	90	0	64	46	7	7	39	1.60
3205112--3205136	11	2.3	11	100	0	50	40	8	12	40	1.72
3205239--3205278	20	2.0	21	90	5	64	10	2	27	60	1.42
3206862--3206906	3	15.7	3	80	17	51	62	0	4	33	1.15
3206861--3206906	23	2.0	23	87	8	67	60	0	6	32	1.22
3206996--3207034	17	2.4	16	82	4	51	71	10	2	15	1.23
3206992--3207070	38	2.1	38	85	7	106	72	11	2	13	1.23
3208348--3208400	27	2.0	27	100	0	106	45	15	13	26	1.82
3208346--3208411	27	2.4	27	89	0	96	48	15	12	24	1.78
3220015--3220056	21	2.0	22	85	4	59	80	4	0	14	0.86
3220008--3220066	29	2.0	31	86	6	86	81	3	1	13	0.90
3220007--3220066	31	2.0	30	86	3	84	81	3	1	13	0.89
3220926--3221156	69	3.3	70	78	5	193	16	20	12	51	1.76
3221132--3221200	35	2.0	35	88	0	102	18	20	8	52	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3221148--3221241	35	2.7	35	79	9	102	18	18	10	53	1.72
3221316--3221435	36	3.5	34	74	10	100	23	15	5	55	1.62
3221374--3221436	32	2.0	30	81	6	72	23	14	4	57	1.56
3221788--3221844	3	19.0	3	96	0	105	64	0	1	33	1.04
3221989--3222053	19	3.2	20	72	18	62	73	9	0	16	1.07
3221983--3222037	16	3.4	16	78	14	51	72	7	0	20	1.07
3222000--3222074	10	7.4	10	74	14	64	76	5	0	18	0.98
3222369--3222431	31	2.0	31	81	6	74	58	7	25	7	1.53
3224108--3224205	27	3.7	27	80	1	108	48	21	10	19	1.78
3224146--3224205	13	4.5	14	73	10	54	48	21	10	20	1.78
3224619--3224657	20	2.0	20	84	0	51	23	0	15	61	1.33
3224784--3224826	22	1.9	23	90	4	70	39	4	2	53	1.34
3226784--3226827	18	2.4	18	96	0	79	36	11	25	27	1.90
3229500--3229524	13	1.9	13	100	0	50	64	12	24	0	1.27
3233079--3233103	13	1.9	13	100	0	50	52	16	8	24	1.70
3244544--3244586	22	2.0	21	82	13	52	6	4	6	81	0.98
3267716--3267773	30	1.9	30	85	0	80	44	5	3	46	1.42
3268028--3268343	158	2.0	158	100	0	632	34	9	18	36	1.84
3272796--3272839	21	2.2	19	84	8	52	31	0	6	61	1.22
3277410--3277518	3	37.3	3	78	9	55	31	8	4	55	1.49
3277581--3277689	37	3.0	37	84	6	141	22	16	24	36	1.94
3278357--3278435	25	2.9	28	73	17	78	21	3	2	72	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3278502--3278535	16	2.2	16	89	5	52	52	11	0	35	1.38
3280578--3280608	16	1.9	16	93	0	53	19	0	35	45	1.51
3280604--3280697	14	6.5	14	80	7	98	11	0	41	46	1.40
3280567--3280689	30	3.9	31	73	15	108	13	0	38	47	1.43
3280565--3280673	51	2.1	50	85	6	139	12	0	39	47	1.42
3280610--3280702	44	2.1	45	88	6	136	12	0	38	48	1.42
3280621--3280717	14	6.5	15	80	12	110	14	0	37	48	1.44
3280618--3280717	45	2.2	44	87	7	139	14	0	36	50	1.43
3281141--3281169	10	2.9	10	100	0	58	79	0	0	20	0.74
3282181--3282218	20	2.0	20	85	15	53	5	15	0	78	0.91

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106