genome.fa.s57.2.7.7.80.10.50.1000.78.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167882.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_15, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22478863

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   

This is table  78  of  106  ( 12717 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15232430--15232473	15	2.9	14	86	10	52	34	0	2	63	1.07
15232535--15232592	27	2.1	29	87	6	84	44	1	0	53	1.10
15232715--15232785	31	2.3	31	82	4	81	46	4	1	47	1.30
15232796--15232862	21	3.3	21	76	10	59	49	0	0	50	1.00
15232799--15232851	21	2.4	22	81	9	63	47	0	0	52	1.00
15232820--15232919	29	3.2	30	73	11	87	42	1	0	57	1.05
15232835--15232890	24	2.3	24	81	0	67	39	0	0	60	0.97
15232826--15232910	29	2.9	30	79	10	95	40	1	0	58	1.05
15232935--15232976	16	2.6	16	84	0	66	40	11	4	42	1.63
15245693--15245719	2	13.5	2	100	0	54	48	0	0	51	1.00
15246604--15246653	22	2.3	21	79	3	55	62	8	20	10	1.52
15248830--15248973	60	2.4	60	85	0	189	24	16	35	23	1.95
15248888--15249120	105	2.2	105	90	0	367	24	15	36	23	1.93
15248957--15249087	60	2.2	60	81	2	147	23	16	38	22	1.93
15249013--15249108	45	2.1	45	82	3	113	23	14	38	22	1.92
15249443--15249470	14	2.0	14	100	0	56	21	28	14	35	1.92
15251142--15251179	19	2.0	20	94	5	69	34	2	0	63	1.09
15251171--15251223	25	2.2	23	86	6	70	58	0	0	41	0.98
15252688--15252723	15	2.5	15	91	8	58	61	0	0	38	0.96
15252688--15252724	14	2.6	14	88	12	58	59	0	0	40	0.97
15258937--15258985	24	2.0	24	84	0	62	40	10	4	44	1.57
15267636--15267669	2	17.0	2	100	0	68	0	50	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15267956--15267983	3	9.3	3	100	0	56	0	35	32	32	1.58
15274553--15274582	9	3.2	9	95	4	51	63	0	0	36	0.95
15274555--15274584	10	3.1	10	95	4	53	63	0	0	36	0.95
15293666--15293746	11	7.3	11	71	18	69	56	1	0	41	1.07
15293668--15293724	17	3.3	18	74	16	57	54	1	0	43	1.10
15295029--15295075	21	2.3	20	85	3	58	48	0	2	48	1.13
15295105--15295156	21	2.5	20	76	11	52	42	0	0	57	0.98
15295130--15295164	14	2.6	13	86	4	52	51	0	0	48	1.00
15295122--15295161	21	1.9	21	90	10	64	47	0	0	52	1.00
15296364--15296405	21	2.0	22	85	4	59	45	0	0	54	0.99
15303732--15303780	21	2.3	21	82	6	55	12	10	2	75	1.13
15303742--15303781	20	2.0	21	90	5	64	10	12	0	77	0.99
15304448--15304533	30	2.8	30	81	8	102	36	18	4	40	1.72
15304448--15304551	30	3.4	30	79	10	95	35	20	3	40	1.71
15304580--15304637	30	2.0	29	93	3	98	37	8	20	32	1.83
15304580--15304649	29	2.4	30	88	7	90	35	8	21	34	1.84
15310827--15310856	12	2.4	12	94	5	51	0	13	0	86	0.57
15317559--15317617	30	2.0	30	93	0	100	18	22	28	30	1.97
15318636--15318840	106	1.9	107	83	3	261	34	17	27	21	1.95
15320695--15320770	38	2.0	38	100	0	152	42	2	7	47	1.46
15329322--15329355	12	2.8	12	90	4	50	14	2	0	82	0.79
15329323--15329357	16	2.3	16	90	9	56	11	2	0	85	0.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15343249--15343273	2	12.5	2	100	0	50	52	0	0	48	1.00
15347258--15347288	2	15.5	2	100	0	62	51	0	0	48	1.00
15348844--15348882	16	2.6	15	84	11	53	56	0	0	43	0.99
15348844--15348893	14	3.4	16	84	10	54	50	0	0	50	1.00
15348856--15348910	16	3.6	16	78	14	53	38	0	0	61	0.96
15348869--15348919	15	3.3	15	76	13	50	35	0	0	64	0.94
15348877--15348923	24	2.0	24	83	8	60	34	0	0	65	0.93
15348952--15349010	18	3.2	19	83	4	59	44	1	5	49	1.34
15348958--15349010	18	2.9	18	86	5	63	47	1	1	49	1.23
15352579--15352625	23	2.1	21	88	7	67	65	14	0	19	1.26
15353466--15353500	13	2.6	13	90	4	52	0	8	14	77	0.99
15355681--15355822	71	2.0	71	94	0	248	26	17	28	28	1.98
15356896--15356938	16	2.7	16	77	0	50	53	0	0	46	1.00
15358393--15358457	27	2.4	27	85	7	71	58	1	3	36	1.23
15370422--15370452	15	2.1	15	100	0	62	51	29	6	12	1.65
15370558--15370592	2	17.5	2	87	0	52	48	5	0	45	1.26
15371015--15371111	39	2.5	38	76	6	104	9	43	5	42	1.59
15381199--15381230	16	2.0	16	93	0	55	25	9	25	40	1.85
15389439--15389478	20	2.0	20	90	0	62	22	7	12	57	1.60
15397035--15397182	72	2.1	72	82	5	174	31	24	13	31	1.93
15400599--15400643	23	2.0	23	82	8	56	68	8	0	22	1.16
15407054--15407093	18	2.1	20	86	9	57	32	0	5	62	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15407791--15407829	20	2.0	20	94	0	69	23	0	12	64	1.28
15408726--15408753	1	28.0	1	100	0	56	0	0	0	100	0.00
15409658--15409713	29	1.9	29	85	0	76	50	3	1	44	1.29
15409803--15409865	29	2.2	29	85	2	83	53	1	1	42	1.19
15409813--15409890	29	2.6	32	76	14	92	48	3	1	46	1.28
15414727--15414856	69	1.9	69	85	6	183	36	11	23	29	1.90
15416982--15417025	23	1.9	23	85	0	61	68	11	2	18	1.30
15421423--15421477	29	1.9	29	88	3	85	36	1	10	50	1.48
15423771--15423833	28	2.2	28	91	2	99	33	0	11	55	1.35
15425102--15425140	15	2.5	15	87	4	51	15	17	0	66	1.25
15428878--15428996	63	1.9	63	100	0	238	41	21	9	28	1.83
15432435--15432470	16	2.3	15	90	4	54	11	2	8	77	1.08
15432579--15432631	14	3.5	14	79	18	61	49	0	0	50	1.00
15432585--15432717	15	8.5	15	67	17	74	45	1	0	51	1.15
15432578--15432717	18	7.6	18	71	22	96	45	1	0	52	1.14
15432579--15432652	32	2.4	30	80	14	87	47	0	0	52	1.00
15432622--15432734	37	3.0	37	73	15	115	41	2	1	53	1.25
15432585--15432734	74	2.0	75	84	6	198	44	2	1	52	1.20
15432658--15432711	22	2.6	22	88	8	78	44	1	0	53	1.11
15444186--15444224	16	2.6	16	88	8	55	15	7	10	66	1.43
15446122--15446160	2	20.0	2	84	5	53	46	2	2	48	1.29
15454206--15454249	23	1.9	23	85	0	61	68	13	0	18	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15459124--15459175	8	6.4	8	86	2	68	23	0	0	76	0.78
15461818--15461843	2	13.0	2	100	0	52	50	0	0	50	1.00
15475064--15475098	2	18.0	2	88	5	54	51	2	0	45	1.16
15481541--15481580	20	2.0	20	90	0	62	57	12	7	22	1.60
15499926--15499976	15	3.5	15	75	5	59	74	0	9	15	1.06
15499940--15499964	13	1.9	13	100	0	50	72	0	12	16	1.13
15508622--15508661	20	2.0	20	90	0	62	22	7	12	57	1.60
15516065--15516212	72	2.1	72	83	5	183	31	23	13	31	1.93
15520203--15520247	23	2.0	23	82	8	56	68	8	0	22	1.16
15524249--15524273	13	1.9	13	100	0	50	16	12	0	72	1.13
15524237--15524292	15	3.7	15	76	7	60	16	12	0	71	1.15
15527046--15527073	2	14.0	2	100	0	56	50	0	0	50	1.00
15535653--15535684	3	10.7	3	93	0	55	0	34	0	65	0.93
15540724--15540752	3	9.7	3	100	0	58	65	0	0	34	0.93
15550729--15550754	1	26.0	1	100	0	52	100	0	0	0	0.00
15563526--15563564	15	2.7	15	84	4	53	51	0	0	48	1.00
15563526--15563560	18	2.0	17	94	5	61	48	0	0	51	1.00
15574026--15574147	16	7.9	15	68	15	63	24	1	29	44	1.63
15575597--15575650	3	18.0	3	76	0	54	40	0	0	59	0.98
15576035--15576068	2	17.0	2	100	0	68	50	0	0	50	1.00
15576129--15576942	414	1.9	419	82	5	1004	34	12	13	40	1.81
15586203--15586263	25	2.6	23	76	5	59	45	4	6	42	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15608874--15608971	48	2.1	47	92	3	162	9	11	22	57	1.62
15615999--15616044	24	1.9	24	90	0	74	21	4	15	58	1.54
15616124--15616165	18	2.4	18	88	4	59	33	0	2	64	1.07
15616184--15616237	10	5.0	10	80	13	54	57	1	0	40	1.09
15627552--15627598	17	2.6	18	80	6	51	46	6	2	44	1.40
15634765--15634820	28	2.0	28	100	0	112	46	14	10	28	1.78
15635269--15635334	27	2.4	28	82	12	75	53	0	0	46	1.00
15635273--15635334	30	2.1	29	85	8	81	53	0	0	46	1.00
15636521--15636745	122	1.8	122	94	0	396	29	14	18	37	1.90
15640424--15640472	16	3.1	16	100	0	98	48	12	8	30	1.69

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106