genome.fa.s57.2.7.7.80.10.50.1000.93.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167882.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_15, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22478863

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   

This is table  93  of  106  ( 12717 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19573039--19573078	20	2.1	19	85	4	53	27	0	2	70	1.01
19573054--19573126	33	2.2	33	83	9	87	38	2	1	57	1.22
19575286--19575328	15	2.9	15	79	3	52	74	0	23	2	0.93
19576317--19576371	27	2.1	26	89	3	83	34	7	0	58	1.26
19577070--19577105	2	18.0	2	100	0	72	50	0	0	50	1.00
19577550--19577584	17	2.1	17	100	0	70	22	20	22	34	1.97
19578972--19579123	78	1.9	78	89	5	236	36	21	17	25	1.94
19579233--19579276	2	22.0	2	95	0	79	0	50	2	47	1.13
19584089--19584114	2	13.0	2	100	0	52	50	0	0	50	1.00
19585169--19585219	25	2.0	25	100	0	102	35	23	11	29	1.90
19586554--19586612	29	2.0	29	96	0	109	27	25	3	44	1.70
19589092--19589118	2	13.5	2	100	0	54	48	0	0	51	1.00
19591050--19591090	21	1.9	22	85	5	57	29	2	0	68	1.03
19591047--19591102	24	2.3	24	79	14	62	33	3	0	62	1.12
19602135--19602179	21	2.2	20	84	7	56	53	13	0	33	1.40
19607335--19607377	2	21.5	2	90	0	59	48	4	2	44	1.36
19609034--19609096	18	3.5	18	82	4	83	30	33	6	30	1.82
19610197--19610239	17	2.6	16	92	3	68	0	16	0	83	0.64
19610205--19610248	20	2.2	20	88	8	63	0	18	0	81	0.68
19611245--19611288	21	2.1	21	83	8	54	75	2	2	20	1.03
19632064--19632102	20	1.9	20	84	5	51	46	5	12	35	1.65
19645447--19645542	34	2.8	35	81	12	110	40	1	1	57	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19652341--19652400	23	2.8	21	72	22	61	63	1	1	33	1.14
19654585--19654641	16	3.7	16	75	13	57	64	0	0	35	0.93
19654562--19654633	30	2.4	30	76	2	74	59	0	0	40	0.97
19655455--19655481	3	9.0	3	100	0	54	66	0	0	33	0.92
19655918--19655989	37	2.1	35	87	10	103	56	4	0	38	1.18
19656193--19656250	23	2.6	22	74	12	57	37	0	0	62	0.96
19660946--19660975	2	15.0	2	100	0	60	50	0	0	50	1.00
19663228--19663299	38	1.9	37	91	2	117	45	20	15	18	1.85
19670039--19670277	128	1.8	131	93	2	421	26	5	22	46	1.72
19672507--19672536	15	2.1	15	93	6	53	80	0	0	20	0.72
19674453--19674478	2	13.0	2	100	0	52	50	0	0	50	1.00
19675084--19675124	16	2.4	18	88	8	59	31	2	2	63	1.20
19679098--19679148	25	2.0	25	81	7	59	62	11	13	11	1.54
19683606--19686212	406	6.4	403	77	6	1946	39	15	13	30	1.87
19686595--19686652	27	2.3	24	75	16	71	56	6	12	24	1.59
19686603--19686658	27	2.1	27	96	0	103	50	7	17	25	1.72
19687023--19688688	404	4.1	402	75	9	998	38	16	14	30	1.89
19687373--19688688	405	3.3	401	75	7	936	38	16	14	30	1.88
19689010--19689952	405	2.3	406	80	3	997	41	17	13	27	1.88
19689010--19689952	406	2.3	405	80	3	986	41	17	13	27	1.88
19691013--19691076	17	3.7	17	81	4	83	37	9	17	35	1.82
19691013--19691085	35	2.1	34	82	2	83	36	9	16	36	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19691020--19691156	17	8.2	17	70	6	73	32	12	14	40	1.84
19691268--19691340	22	3.4	22	74	14	71	39	13	10	35	1.80
19696493--19696637	48	3.1	47	85	6	195	24	7	10	57	1.57
19697233--19697263	4	8.0	4	92	7	55	77	0	0	22	0.77
19697485--19697524	19	2.0	19	85	9	53	7	32	0	60	1.25
19697705--19697735	13	2.4	13	94	0	53	61	16	0	22	1.34
19698168--19698548	88	4.3	90	78	7	379	39	14	16	29	1.88
19698167--19698551	44	8.8	44	77	4	240	40	14	16	29	1.88
19698558--19703744	332	15.7	326	71	10	1366	34	19	14	31	1.92
19699469--19700078	333	1.8	332	80	5	730	36	17	14	31	1.89
19699858--19700622	330	2.3	329	80	4	799	35	19	14	30	1.92
19700841--19701576	325	2.2	325	80	6	781	34	19	14	31	1.91
19703472--19704193	375	1.9	376	82	3	889	33	22	15	29	1.94
19703833--19705623	331	5.4	324	74	9	1103	35	19	14	30	1.91
19706106--19706152	21	2.2	21	96	0	85	34	23	14	27	1.94
19707844--19707903	7	8.4	7	72	17	52	35	0	0	65	0.93
19707877--19707923	14	3.0	16	84	9	53	29	2	0	68	1.02
19707972--19708005	17	2.0	17	100	0	68	17	23	5	52	1.66
19708145--19708182	19	2.0	19	94	0	67	60	5	0	34	1.19
19721012--19721058	2	23.5	2	100	0	94	48	0	0	51	1.00
19724524--19724554	16	1.9	16	93	0	53	58	0	0	41	0.98
19725538--19725570	2	16.5	2	100	0	66	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19727046--19727108	31	2.0	31	100	0	126	26	25	6	41	1.79
19749286--19749311	13	2.0	13	100	0	52	38	15	15	30	1.88
19753073--19753107	4	8.8	4	87	0	52	48	20	2	28	1.63
19753070--19753115	20	2.3	20	92	0	74	47	15	2	34	1.57
19753089--19753128	2	20.0	2	84	0	53	50	7	0	42	1.30
19753077--19753127	16	3.2	16	88	0	66	49	11	1	37	1.51
19758044--19758129	10	7.8	11	70	21	56	62	0	1	36	1.03
19759299--19759327	14	2.0	15	93	6	51	58	6	13	20	1.58
19759576--19759626	19	2.8	19	77	22	56	27	11	0	60	1.31
19762980--19763019	21	1.9	21	85	10	55	62	0	7	30	1.23
19763764--19763833	24	2.8	23	76	19	68	35	0	0	64	0.94
19765948--19766073	66	1.9	66	90	3	200	25	12	17	44	1.84
19767320--19767363	22	2.0	22	90	0	70	43	6	11	38	1.67
19771627--19771667	22	1.9	22	90	5	66	46	14	9	29	1.77
19779633--19779669	2	18.5	2	100	0	74	48	0	0	51	1.00
19789256--19789287	2	16.0	2	93	0	55	53	0	46	0	1.00
19792337--19792401	34	1.9	33	90	3	103	43	1	9	46	1.45
19792377--19792428	24	2.1	25	85	3	70	57	1	3	36	1.28
19797749--19797794	13	3.1	15	75	15	51	69	2	0	28	1.00
19799590--19799619	2	15.0	2	92	0	51	53	0	0	46	1.00
19802053--19802097	12	3.8	12	85	5	56	40	0	2	57	1.11
19802056--19802092	18	2.0	19	85	15	51	37	0	0	62	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19802323--19802396	25	3.0	25	89	0	121	8	12	29	50	1.68
19802323--19802391	11	5.7	11	71	18	57	7	11	30	50	1.65
19803296--19803347	22	2.3	23	83	9	63	51	0	0	48	1.00
19803919--19803952	3	11.3	3	100	0	68	32	0	0	67	0.91
19806431--19806490	33	1.9	31	90	10	95	41	13	18	26	1.87
19806856--19806922	21	2.9	24	70	20	61	28	8	5	56	1.53
19806862--19806900	21	1.9	21	94	5	71	30	5	5	58	1.41
19808157--19808344	14	12.9	15	65	16	67	18	2	29	50	1.58
19808268--19808340	30	2.5	29	77	4	83	17	1	28	52	1.54
19808455--19808511	3	19.0	3	100	0	114	33	0	0	66	0.92
19808665--19808703	9	4.1	9	81	12	51	25	0	2	71	0.98
19808675--19808723	20	2.5	19	83	6	53	24	2	8	65	1.31
19808812--19808857	17	2.9	16	81	9	51	80	0	0	19	0.71
19809921--19809947	14	1.9	14	100	0	54	25	0	0	74	0.83
19810629--19810844	110	2.0	110	83	5	276	42	16	18	23	1.89
19810839--19810881	22	2.0	22	90	0	68	32	18	18	30	1.95
19810633--19810879	110	2.2	109	79	9	268	40	17	17	24	1.90
19810844--19810901	22	2.6	22	83	0	71	31	22	20	25	1.98
19810740--19811066	132	2.5	132	83	1	404	39	17	18	24	1.92
19811076--19811131	22	2.5	22	83	11	78	41	14	16	28	1.87
19810985--19811160	94	1.9	94	80	2	210	40	17	15	26	1.89
19811457--19811532	3	24.7	3	94	5	134	32	0	0	67	0.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19812957--19812994	19	1.9	19	89	5	58	21	2	0	76	0.91
19816216--19816245	10	3.1	10	95	4	53	36	0	0	63	0.95
19816218--19816247	9	3.2	9	95	4	51	36	0	0	63	0.95
19818330--19818365	12	3.0	12	87	0	54	25	0	0	75	0.81
19818822--19818875	26	2.1	26	100	0	108	42	22	7	27	1.80
19824511--19824666	78	2.0	78	91	2	251	40	11	20	27	1.87
19837453--19837509	29	2.0	27	80	12	62	47	5	0	47	1.24
19842296--19842350	12	4.6	12	79	0	56	20	1	10	67	1.30
19842414--19842463	24	2.0	25	88	3	75	32	8	16	44	1.76
19843106--19843148	23	1.9	22	86	13	61	55	11	2	30	1.48

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106