genome.fa.s57.2.7.7.80.10.50.1000.29.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167882.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_15, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22478863

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   

This is table  29  of  106  ( 12717 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5429618--5429658	8	5.4	8	94	5	68	0	0	7	92	0.38
5429668--5429804	36	3.4	40	80	11	156	34	25	16	23	1.95
5429668--5429821	77	2.0	78	83	7	197	35	24	17	23	1.96
5430851--5430890	12	3.5	11	86	10	53	7	5	0	87	0.66
5440987--5441287	59	5.0	60	84	8	389	33	12	7	46	1.70
5441302--5441362	28	2.2	27	82	8	70	78	3	4	13	1.03
5441305--5441378	23	3.3	22	75	12	62	77	2	5	14	1.07
5441300--5441389	17	5.3	16	75	11	63	74	2	4	18	1.09
5442279--5442316	17	2.2	17	90	9	60	55	7	10	26	1.61
5442379--5442434	19	2.8	21	81	13	64	62	3	0	33	1.12
5442378--5442434	22	2.6	22	83	5	62	63	3	0	33	1.12
5442457--5442508	27	1.9	27	88	7	79	69	3	0	26	1.06
5442510--5442540	9	3.4	9	90	0	53	87	0	12	0	0.55
5442505--5442556	18	2.8	18	76	5	50	78	3	9	7	1.06
5445113--5445173	29	2.1	29	93	0	104	36	14	8	40	1.76
5446916--5447015	29	3.4	29	74	14	98	42	2	1	55	1.18
5446968--5447016	8	6.5	8	73	21	52	46	0	0	53	1.00
5446970--5447029	11	5.9	10	74	14	52	46	0	1	51	1.10
5446979--5447028	22	2.3	21	90	10	75	48	0	2	50	1.12
5446970--5447068	50	2.0	51	85	2	137	44	0	5	50	1.24
5447063--5447134	25	3.3	19	71	26	54	37	1	0	61	1.05
5447101--5447139	8	4.5	8	82	17	51	41	0	0	58	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5447101--5447152	19	2.9	18	83	13	63	44	0	0	55	0.99
5448052--5448112	31	2.0	31	90	6	97	55	1	4	37	1.31
5448191--5448229	17	2.2	19	90	9	64	41	0	0	58	0.98
5448209--5448269	27	2.2	28	82	8	81	32	4	4	57	1.41
5448209--5448271	26	2.3	27	82	15	76	33	4	4	57	1.41
5448722--5448751	12	2.4	13	94	5	53	46	0	0	53	1.00
5449046--5449194	71	2.1	69	84	8	187	42	4	7	44	1.53
5449183--5449248	11	5.7	11	72	22	55	36	4	7	51	1.51
5449168--5449324	21	7.1	21	69	13	84	36	7	8	47	1.64
5449759--5449857	22	4.5	22	74	5	83	37	7	7	48	1.58
5449656--5449819	88	1.9	87	81	1	202	40	7	7	44	1.61
5450122--5450235	21	5.2	21	73	14	72	35	10	6	47	1.63
5450159--5450245	45	1.9	45	83	4	113	34	9	8	48	1.65
5450153--5450282	66	2.0	65	82	8	156	35	10	6	47	1.64
5450341--5450411	22	3.2	22	85	0	97	38	7	8	46	1.62
5450711--5450818	22	5.0	22	80	1	92	37	12	7	42	1.70
5451085--5451144	22	2.8	20	73	12	57	36	8	5	50	1.55
5451238--5451308	22	3.3	21	76	5	61	38	9	2	49	1.51
5451514--5451617	22	4.8	22	75	4	77	38	9	2	49	1.51
5457241--5457301	29	2.1	29	93	0	104	36	14	8	40	1.76
5460061--5460158	28	3.7	28	72	24	86	42	0	5	52	1.23
5460067--5460115	8	6.5	8	73	21	52	46	0	0	53	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5460069--5460128	11	5.9	10	74	14	52	46	0	1	51	1.10
5460069--5460167	50	2.0	51	87	2	146	44	0	4	51	1.20
5460202--5460240	8	4.5	8	82	17	51	41	0	0	58	0.98
5460174--5460250	27	2.9	25	76	14	75	41	1	0	57	1.07
5460202--5460253	19	2.9	18	83	13	63	44	0	0	55	0.99
5460205--5460254	14	3.6	14	76	12	50	46	0	0	54	1.00
5461268--5461302	18	1.9	18	88	0	52	42	2	0	54	1.15
5461826--5461855	12	2.4	13	94	5	53	46	0	0	53	1.00
5462160--5462289	70	1.9	65	84	10	154	42	4	7	45	1.53
5462282--5462347	11	5.7	11	72	22	55	36	4	7	51	1.51
5462146--5462293	71	2.1	71	85	7	198	43	4	7	45	1.51
5462299--5462349	21	2.4	21	93	0	84	39	7	5	47	1.57
5462428--5462481	22	2.5	22	75	16	60	38	5	5	50	1.49
5462845--5462933	22	4.1	22	71	11	76	38	7	7	46	1.62
5462849--5462975	66	1.9	65	81	7	150	38	7	7	46	1.60
5463341--5463401	22	2.8	21	78	7	59	39	13	6	40	1.70
5463441--5463510	22	3.2	22	85	4	97	38	7	8	45	1.62
5463808--5463915	22	5.0	22	80	1	92	37	12	7	42	1.70
5464019--5464100	22	3.9	22	66	15	55	40	8	6	45	1.60
5464344--5464410	22	3.0	22	74	8	64	37	7	2	52	1.45
5464616--5464719	22	4.8	22	75	4	77	38	9	2	49	1.51
5470404--5470464	29	2.1	29	93	0	104	36	14	8	40	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5471228--5471257	2	15.0	2	100	0	60	50	0	0	50	1.00
5478947--5478976	15	2.0	15	93	0	51	43	0	0	56	0.99
5479155--5479189	16	2.2	16	94	0	61	45	0	11	42	1.40
5482247--5482316	34	2.0	35	86	2	97	57	0	0	42	0.99
5488378--5488438	18	3.6	18	74	17	76	27	6	11	54	1.61
5488375--5488437	32	2.0	32	96	0	117	28	6	9	55	1.56
5489119--5489203	41	2.0	42	84	2	109	50	17	10	21	1.76
5489158--5489262	54	1.9	56	86	3	151	54	16	9	20	1.69
5490180--5490250	24	3.1	24	71	22	71	63	7	4	25	1.38
5490351--5490436	26	3.3	27	83	6	124	58	11	4	25	1.52
5490358--5490431	12	5.8	12	69	20	51	59	9	2	28	1.42
5491873--5491916	17	2.6	17	80	16	56	68	2	0	29	1.02
5492365--5492397	8	3.7	9	88	12	50	81	0	0	18	0.68
5492364--5492397	17	1.9	18	94	5	61	79	0	0	20	0.73
5495365--5495408	22	2.0	22	91	4	72	29	11	6	52	1.63
5495810--5495846	18	2.1	18	89	0	56	2	13	2	81	0.92
5498082--5498122	22	2.0	22	90	9	68	17	2	9	70	1.25
5503624--5503899	93	3.1	92	61	19	213	35	13	13	38	1.83
5503561--5503999	174	2.5	173	92	0	707	35	14	12	37	1.85
5503720--5503986	87	3.1	87	61	16	199	34	13	14	38	1.85
5505239--5505270	16	2.0	16	100	0	64	43	6	0	50	1.27
5505141--5505288	60	2.5	60	81	5	165	55	6	4	33	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5507468--5507516	24	2.0	24	84	7	64	57	0	2	40	1.10
5508045--5508077	8	4.2	8	92	7	50	0	18	0	81	0.68
5508048--5508087	20	2.0	21	85	5	55	0	22	2	75	0.93
5511776--5512014	124	1.9	123	92	3	401	33	9	11	45	1.72
5513375--5513411	2	18.0	2	94	5	65	48	2	0	48	1.15
5513743--5513767	2	12.5	2	100	0	50	48	0	0	52	1.00
5537658--5537744	31	2.8	31	78	1	95	35	20	2	41	1.65
5546017--5546055	21	1.9	20	89	5	60	28	7	5	58	1.47
5550750--5550823	3	25.3	3	70	24	52	60	5	1	32	1.27
5550751--5550823	8	8.8	8	78	16	69	60	5	1	32	1.28
5550738--5550848	23	5.2	22	78	20	105	56	7	2	33	1.41
5550777--5550826	5	9.8	5	76	20	50	64	2	0	34	1.05
5550960--5550995	12	2.8	13	87	8	56	75	5	0	19	1.00
5550979--5551014	18	1.9	19	94	5	65	77	8	0	13	0.98
5552240--5552376	43	3.2	43	84	2	168	43	13	18	23	1.86
5552420--5552591	63	2.7	63	70	12	143	44	8	22	23	1.80
5552975--5553090	33	3.5	32	78	9	117	43	13	16	25	1.85
5553038--5553096	17	3.5	17	73	0	55	45	13	11	28	1.79
5553207--5553324	45	2.6	45	81	1	139	39	16	9	34	1.80
5558365--5558428	23	2.9	23	83	4	87	56	6	4	32	1.45
5558377--5558434	23	2.7	22	86	7	75	55	5	5	34	1.45
5558409--5558470	23	2.5	25	82	15	76	54	4	3	37	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5558567--5558612	20	2.3	20	79	13	51	73	4	0	21	1.00
5558577--5558625	13	3.8	13	78	7	55	79	2	0	18	0.83
5558819--5558846	14	2.0	14	100	0	56	64	0	21	14	1.29
5558848--5559004	71	2.2	69	79	9	167	59	17	14	8	1.60
5558848--5559021	36	5.0	36	80	5	153	58	16	14	10	1.64
5559668--5559720	3	17.7	3	84	0	70	30	1	1	66	1.13
5560232--5560291	14	4.4	14	87	4	86	45	18	10	26	1.81
5560203--5560327	41	3.1	41	77	2	110	48	20	6	25	1.73
5560232--5560291	27	2.2	27	87	3	84	45	18	10	26	1.81
5565440--5565480	20	2.0	20	85	0	55	39	12	12	36	1.80

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106