genome.fa.s57.2.7.7.80.10.50.1000.39.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167882.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_15, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22478863

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   

This is table  39  of  106  ( 12717 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7217548--7217613	13	5.5	11	75	13	60	63	3	1	31	1.19
7217551--7217627	26	2.9	28	84	7	90	62	3	2	31	1.27
7234188--7234240	25	2.0	25	85	7	70	33	0	1	64	1.05
7234699--7234745	21	2.2	21	100	0	94	25	8	4	61	1.43
7235838--7236084	95	2.6	94	84	8	313	43	9	8	38	1.67
7236864--7236910	22	2.1	22	96	0	85	29	8	2	59	1.39
7239928--7239987	18	3.2	18	77	13	59	76	0	15	8	1.00
7239941--7239993	19	2.8	18	80	11	52	71	0	18	9	1.12
7239934--7239993	30	1.9	32	83	10	79	71	0	16	11	1.14
7240293--7240321	15	1.9	15	100	0	58	75	0	6	17	1.01
7240277--7240336	24	2.5	22	75	15	57	81	0	6	11	0.86
7240276--7240338	17	3.9	15	79	18	65	82	0	6	11	0.83
7241770--7241952	96	1.9	96	82	4	226	21	20	9	48	1.77
7241660--7241977	64	5.0	64	79	6	252	20	21	10	48	1.79
7241423--7241976	32	17.3	32	72	7	187	19	19	11	49	1.79
7242036--7242215	33	5.4	33	81	2	200	27	15	11	45	1.80
7243805--7243857	26	2.0	28	85	7	74	75	3	13	7	1.15
7245967--7246012	21	2.2	21	92	0	74	34	21	17	26	1.95
7262187--7262349	88	1.9	88	84	3	222	46	12	9	31	1.74
7270431--7270480	24	2.1	24	100	0	100	28	20	14	38	1.91
7271915--7272029	60	1.9	59	80	7	133	29	17	10	42	1.82
7272155--7272273	63	1.9	62	80	1	139	31	14	11	42	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7271945--7272878	291	3.2	288	80	6	952	32	15	14	36	1.88
7280382--7280857	242	2.0	242	99	0	943	35	12	14	38	1.83
7293124--7293153	12	2.4	12	94	5	51	40	40	0	20	1.52
7295177--7295209	12	2.8	12	95	0	57	33	18	18	30	1.94
7297328--7297357	12	2.4	12	94	5	51	40	40	0	20	1.52
7306605--7306637	12	2.8	12	95	0	57	33	18	18	30	1.94
7308759--7308788	12	2.4	12	94	5	51	40	40	0	20	1.52
7316288--7316378	42	2.2	42	80	2	103	28	14	12	45	1.80
7316318--7316401	42	2.0	42	88	0	123	27	16	9	46	1.78
7319652--7319734	3	27.7	3	100	0	166	67	0	0	32	0.91
7321019--7321043	1	25.0	1	100	0	50	0	0	100	0	0.00
7326369--7326542	75	2.3	73	76	11	185	50	5	10	33	1.60
7326462--7326767	113	2.7	113	78	5	305	46	6	10	35	1.66
7326772--7326952	71	2.5	71	83	3	204	44	4	10	40	1.59
7329292--7329635	171	2.0	171	94	0	607	32	15	25	26	1.95
7344904--7345001	11	8.8	11	70	11	58	22	2	25	50	1.60
7348213--7348242	15	1.9	16	93	6	53	56	13	0	30	1.37
7354828--7354912	23	3.6	23	88	4	116	14	23	18	43	1.87
7358557--7358600	22	2.0	22	95	0	79	31	11	13	43	1.80
7358842--7358866	12	2.1	12	100	0	50	60	16	8	16	1.58
7360456--7360514	21	2.9	21	97	2	111	38	18	10	32	1.84
7363620--7363650	14	2.2	14	100	0	62	12	16	16	54	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7366080--7366117	6	6.3	6	82	11	51	13	34	34	18	1.89
7374024--7374102	39	2.0	39	92	4	133	32	39	6	21	1.79
7384527--7384627	26	3.9	26	78	10	109	58	0	1	39	1.09
7384526--7384628	51	2.0	53	84	7	140	58	0	1	39	1.09
7384519--7384629	28	4.1	28	77	15	92	56	0	2	40	1.13
7384580--7384655	28	2.7	28	82	8	84	61	1	1	35	1.12
7384526--7384660	53	2.6	51	80	11	132	59	0	2	37	1.15
7384849--7384911	32	1.9	32	83	3	81	36	12	3	47	1.58
7392502--7394481	856	2.3	855	79	5	2046	37	13	11	36	1.81
7398122--7398232	54	2.1	54	92	0	186	27	26	25	20	1.99
7406703--7406984	134	2.1	133	93	0	483	45	10	15	28	1.80
7408131--7408418	151	1.9	151	89	1	443	43	16	12	28	1.84
7410877--7411250	179	2.1	182	82	3	452	46	8	6	38	1.60
7409614--7413670	358	11.2	355	72	10	2018	42	8	7	41	1.64
7412049--7412092	23	2.0	23	86	13	65	34	4	6	54	1.47
7410845--7413446	719	3.6	702	77	9	2156	42	8	7	41	1.63
7409614--7413670	181	22.4	180	74	9	2235	42	8	7	41	1.64
7410861--7413301	900	2.7	893	78	7	2193	42	8	7	41	1.62
7413435--7413460	13	2.0	13	100	0	52	53	7	0	38	1.30
7411774--7413676	900	2.1	901	78	9	1869	42	7	7	41	1.61
7413629--7413676	18	2.8	16	78	9	51	39	8	6	45	1.59
7414544--7414858	172	1.8	173	82	4	402	43	8	7	40	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7413944--7417410	181	19.4	180	73	8	2113	41	7	8	41	1.64
7413760--7417410	363	10.3	352	73	10	1640	42	7	8	41	1.64
7416077--7417366	182	7.2	180	74	9	779	42	7	7	41	1.62
7417073--7417394	177	1.8	172	78	6	360	42	7	9	40	1.64
7417436--7417477	18	2.5	16	88	7	57	42	7	2	47	1.43
7417618--7418104	167	2.8	166	77	11	403	40	7	7	44	1.62
7417441--7418699	180	7.1	181	76	7	866	41	8	7	42	1.63
7418852--7419356	181	2.8	181	80	4	457	41	9	8	40	1.68
7419594--7420038	181	2.5	183	84	2	560	40	8	8	43	1.65
7419956--7420224	149	1.8	149	85	3	380	40	10	8	41	1.69
7420357--7420774	181	2.4	179	79	9	405	44	8	7	39	1.64
7420897--7423410	181	14.1	180	73	10	1535	41	8	8	40	1.66
7423616--7423892	143	1.9	144	84	2	369	43	7	7	41	1.62
7425065--7425098	17	2.0	17	100	0	68	35	11	17	35	1.87
7425098--7425292	98	2.0	97	84	5	250	41	9	5	44	1.58
7426341--7429123	181	15.5	179	75	8	1728	41	8	8	41	1.65
7426985--7427039	18	3.2	18	82	15	71	40	7	5	47	1.54
7425195--7435794	896	11.8	890	72	10	4502	40	8	9	41	1.68
7425195--7435642	715	14.6	707	71	12	3710	40	9	9	41	1.68
7427913--7429116	357	3.4	356	78	8	994	40	8	8	42	1.66
7429054--7429119	32	2.1	31	81	13	73	56	3	1	39	1.24
7429202--7430904	356	4.8	359	74	10	843	40	8	10	40	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7429156--7431060	181	10.6	181	75	8	1329	40	8	10	40	1.70
7432283--7435746	538	6.4	537	72	11	1129	40	9	8	41	1.68
7431146--7435794	181	25.8	181	72	9	2249	40	9	8	40	1.68
7432151--7435794	357	10.1	359	72	9	1387	40	9	8	41	1.68
7433554--7435348	182	10.0	173	73	11	732	40	9	8	40	1.68
7435793--7435826	17	2.0	17	100	0	68	41	11	17	29	1.85
7435912--7436574	181	3.7	179	78	6	673	40	7	11	41	1.69
7436574--7436607	17	2.0	17	88	11	52	55	0	0	44	0.99
7437304--7437369	21	3.4	18	70	25	55	50	3	3	43	1.33
7437679--7437726	25	1.9	25	83	8	62	50	4	0	45	1.21
7437882--7437910	10	3.0	10	95	5	51	51	0	0	48	1.00
7438172--7438245	21	3.8	20	69	26	61	54	0	1	44	1.08
7438470--7438529	29	2.0	31	83	6	79	53	5	1	40	1.33
7438646--7438680	16	2.2	16	89	0	52	54	2	0	42	1.15
7438624--7438778	13	11.3	13	64	17	55	50	1	1	46	1.17
7438619--7438789	16	10.0	16	66	25	50	50	1	1	46	1.16
7438910--7438943	12	2.8	12	95	4	59	41	0	0	58	0.98
7439251--7439290	20	2.1	18	90	9	62	42	2	0	55	1.13
7439260--7439315	23	2.5	22	78	21	62	39	1	1	57	1.20
7439281--7439347	26	2.6	26	75	13	66	43	0	2	53	1.16
7439305--7439343	17	2.3	17	86	8	53	51	0	0	48	1.00
7439492--7439532	18	2.2	19	86	4	57	46	4	0	48	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7439545--7439582	10	3.6	10	92	7	58	39	2	0	57	1.12
7439845--7439955	12	9.5	11	71	25	61	45	2	1	49	1.26
7439924--7439957	11	2.9	12	86	8	52	52	0	0	47	1.00
7440048--7440080	11	3.1	11	82	8	50	54	0	0	45	0.99
7440551--7440583	17	1.9	17	93	0	57	48	3	0	48	1.17
7440957--7441054	28	3.7	27	75	18	91	43	2	0	54	1.12
7441230--7441313	19	4.2	20	78	6	73	53	0	2	44	1.13
7441255--7441305	23	2.5	20	78	12	50	52	0	3	43	1.19
7441357--7441402	20	2.4	20	79	17	53	43	0	2	54	1.12
7441339--7441391	16	3.3	15	76	19	54	41	0	1	56	1.10

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106