genome.fa.s57.2.7.7.80.10.50.1000.69.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167882.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_15, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22478863

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   

This is table  69  of  106  ( 12717 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12497421--12497506	26	3.3	24	79	19	93	50	1	0	48	1.08
12498168--12498197	14	2.1	15	93	6	53	43	13	0	43	1.43
12498341--12498399	28	2.1	27	84	9	75	49	6	1	42	1.39
12499480--12499524	23	1.9	23	86	4	63	20	2	6	71	1.20
12509342--12509407	24	2.8	24	77	4	82	75	0	0	24	0.80
12510255--12511138	236	3.7	236	81	2	903	19	22	14	44	1.86
12510255--12511028	354	2.2	353	83	3	950	19	21	13	45	1.85
12510255--12511002	118	6.3	116	81	4	732	19	21	13	45	1.85
12511457--12511510	3	18.3	3	77	11	58	25	1	0	72	0.95
12511460--12511522	27	2.4	27	84	10	85	25	1	0	73	0.93
12511758--12511799	22	2.0	23	86	13	63	66	16	11	4	1.40
12512404--12512462	18	3.3	18	76	19	61	15	3	3	77	1.02
12512405--12512450	19	2.5	19	83	13	60	15	4	2	78	1.01
12520123--12520170	21	2.3	19	77	19	51	58	2	2	37	1.22
12525689--12525716	2	14.0	2	100	0	56	0	0	50	50	1.00
12527918--12527947	11	2.8	11	95	5	53	56	0	0	43	0.99
12527941--12528335	159	2.4	158	80	8	395	48	3	1	46	1.29
12529913--12529969	28	2.0	28	100	0	114	24	14	21	40	1.90
12546261--12546300	2	20.0	2	100	0	80	0	50	0	50	1.00
12554332--12554366	18	1.9	18	88	0	52	14	2	2	80	0.95
12554743--12554768	2	13.0	2	100	0	52	50	0	0	50	1.00
12555283--12555319	19	2.1	18	90	10	58	48	0	5	45	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12555462--12555516	20	2.6	21	77	11	58	58	0	3	38	1.16
12555614--12555655	4	11.0	4	85	10	61	0	26	0	73	0.83
12555609--12555650	18	2.3	18	87	0	66	0	28	0	71	0.86
12555863--12555915	15	3.6	14	79	7	52	3	9	5	81	0.98
12555880--12555915	15	2.3	15	95	4	63	5	5	5	83	0.91
12557522--12557554	2	16.5	2	93	0	57	48	3	0	48	1.17
12558573--12558616	6	6.8	6	84	7	52	81	0	2	15	0.78
12558573--12558617	13	3.4	14	84	12	58	82	0	2	15	0.77
12558573--12558617	7	6.7	7	87	5	58	82	0	2	15	0.77
12559022--12559053	7	4.6	7	96	0	55	0	34	0	65	0.93
12559022--12559060	14	2.8	14	88	0	60	2	30	0	66	1.05
12572622--12572656	2	17.5	2	100	0	70	51	0	0	48	1.00
12579512--12579548	19	1.9	19	89	10	58	59	0	0	40	0.97
12581864--12581907	21	2.1	21	83	8	54	31	9	2	56	1.43
12582287--12582333	2	23.5	2	100	0	94	48	0	0	51	1.00
12583432--12583461	1	30.0	1	93	0	51	96	3	0	0	0.21
12583433--12583463	15	2.1	15	100	0	62	93	6	0	0	0.35
12595437--12595475	19	2.0	20	90	10	62	66	2	0	30	1.05
12596114--12596166	22	2.6	20	83	13	72	47	0	0	52	1.00
12596627--12596681	17	3.3	17	72	20	53	63	5	0	30	1.17
12599303--12599384	38	2.1	39	82	6	96	52	0	4	42	1.23
12605242--12605271	16	1.9	16	93	6	53	53	0	10	36	1.35
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12608004--12608036	16	2.1	16	100	0	66	18	0	24	57	1.40
12609950--12609987	17	2.3	17	86	4	51	60	0	5	34	1.19
12609950--12609992	16	2.6	17	82	7	54	62	0	4	32	1.15
12614551--12614579	14	2.0	15	93	6	51	75	0	0	24	0.80
12617877--12617920	20	2.2	20	100	0	88	40	15	15	27	1.88
12634221--12634437	109	2.0	108	91	0	353	21	15	17	45	1.85
12640300--12640376	25	3.3	23	81	12	84	49	1	1	48	1.17
12640681--12640754	21	3.6	21	96	3	134	50	0	0	50	1.00
12640727--12640787	30	2.0	30	83	0	77	54	1	0	44	1.10
12642395--12642468	33	2.2	34	78	7	80	50	5	4	40	1.44
12642410--12642474	33	1.9	33	84	3	85	47	6	3	43	1.43
12643614--12643663	25	2.0	25	92	4	82	12	4	2	82	0.90
12644158--12644186	3	10.0	3	92	7	51	34	31	0	34	1.58
12644158--12644185	14	2.0	14	100	0	56	35	28	0	35	1.58
12652402--12652441	3	13.3	3	83	0	53	7	35	25	32	1.84
12652396--12652441	6	7.7	6	90	0	56	8	36	23	30	1.85
12652395--12652441	12	3.9	12	88	0	67	8	36	25	29	1.86
12663987--12664115	64	2.0	64	83	5	163	42	4	11	41	1.62
12666245--12666373	18	7.2	18	76	10	102	29	4	32	33	1.78
12666311--12666363	21	2.7	21	88	8	76	30	5	33	30	1.81
12668043--12668084	13	3.2	13	81	15	50	50	2	2	45	1.27
12670397--12670436	19	2.0	20	85	4	55	70	12	0	17	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12674155--12674202	23	2.0	24	88	4	71	33	8	0	58	1.28
12674763--12674803	3	14.3	3	90	10	68	34	0	0	65	0.93
12676045--12676337	18	16.6	18	70	20	142	45	1	0	52	1.13
12676048--12676130	23	3.6	23	75	6	69	48	1	0	50	1.08
12676048--12676348	55	5.7	52	70	15	149	45	1	0	52	1.15
12676174--12676367	98	2.0	99	79	12	213	46	2	0	50	1.19
12679184--12679423	120	2.0	120	90	0	372	23	16	20	39	1.92
12691900--12691959	17	2.9	22	69	25	58	50	0	0	50	1.00
12691909--12691944	18	2.1	17	90	10	56	44	0	0	55	0.99
12692862--12692893	16	2.0	16	93	0	55	71	0	0	28	0.86
12692858--12692900	14	3.0	14	80	12	52	67	0	0	32	0.91
12693126--12693211	25	3.3	24	69	19	64	48	0	0	51	1.00
12693125--12693193	29	2.3	29	82	7	77	53	0	0	46	1.00
12693139--12693196	29	2.0	29	86	10	82	50	0	0	50	1.00
12693517--12693555	13	3.2	12	82	17	53	76	0	0	23	0.78
12694683--12694727	22	2.0	23	91	4	74	53	0	2	44	1.13
12695190--12695231	18	2.3	19	80	12	52	16	2	0	80	0.81
12696097--12696139	8	5.2	8	97	2	77	13	0	0	86	0.58
12696086--12696139	8	6.2	9	89	6	60	11	3	0	85	0.73
12697422--12697461	21	2.0	19	85	9	53	5	12	0	82	0.82
12700765--12700809	18	2.5	18	88	0	63	22	6	17	53	1.67
12705625--12705660	18	2.0	18	94	0	63	16	16	19	47	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12712653--12712806	52	3.0	51	82	7	177	27	24	7	40	1.82
12713745--12713775	15	2.1	15	100	0	62	45	6	6	41	1.55
12718853--12718878	2	13.0	2	100	0	52	50	0	0	50	1.00
12719749--12719796	24	2.0	25	83	4	62	62	2	0	35	1.07
12720371--12720433	25	2.5	25	78	14	67	60	0	0	39	0.97
12724040--12724073	13	2.4	14	90	9	52	70	26	2	0	1.01
12726859--12726899	22	2.0	21	85	9	57	31	9	4	53	1.55
12733376--12733487	41	2.7	41	79	6	120	32	21	15	31	1.94
12733968--12734341	107	3.5	106	79	4	389	38	15	11	35	1.83
12733995--12734384	213	1.8	212	82	3	507	37	15	12	33	1.86
12733980--12734380	106	3.8	107	78	6	397	37	16	11	33	1.85
12735081--12735124	19	2.5	17	82	10	61	75	6	2	15	1.12
12736843--12736876	3	11.3	3	100	0	68	64	0	0	35	0.94
12738743--12738797	29	1.9	29	85	3	76	40	1	1	56	1.21
12744874--12744933	2	31.0	2	93	6	106	0	50	0	50	1.00
12745433--12745477	22	2.0	22	86	0	63	35	0	2	62	1.08
12747204--12747232	13	2.2	13	100	0	58	17	27	20	34	1.95
12747377--12747440	18	3.3	18	78	12	65	45	0	0	54	0.99
12747524--12747556	11	3.1	11	91	8	59	24	0	0	75	0.80
12747519--12747569	21	2.4	21	73	0	57	31	1	1	64	1.15
12749382--12749411	2	15.5	2	93	6	53	53	0	0	46	1.00
12753309--12753333	2	12.5	2	100	0	50	52	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12753525--12753582	26	2.3	25	82	11	73	63	0	0	36	0.94
12756485--12756572	3	29.0	3	88	2	131	62	2	1	34	1.15
12759862--12759895	2	17.0	2	100	0	68	50	0	50	0	1.00
12776166--12776221	27	2.1	27	83	6	69	48	5	1	44	1.36
12780734--12780798	30	2.2	30	86	13	98	50	7	7	33	1.59
12780785--12780832	25	1.9	25	87	8	71	52	0	8	39	1.32
12780814--12780892	28	2.7	30	76	13	83	55	2	2	39	1.27
12784237--12784342	51	2.1	51	82	10	128	63	5	5	25	1.39
12785036--12785074	19	1.9	19	85	10	51	41	0	0	58	0.98
12785046--12785126	28	3.0	28	74	3	85	43	0	0	56	0.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106