genome.fa.s57.2.7.7.80.10.50.1000.7.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167882.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_15, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22478863

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   

This is table  7  of  106  ( 12717 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
992217--992313	43	2.2	46	81	10	121	43	2	2	52	1.24
992265--992316	21	2.5	20	81	9	59	44	0	1	53	1.11
992468--992571	42	2.4	44	78	12	117	46	2	1	49	1.28
996420--996460	3	13.7	3	100	0	82	65	0	0	34	0.93
1000647--1000712	12	5.8	12	70	19	52	59	0	3	37	1.13
1000647--1000692	24	2.0	23	87	12	67	60	0	0	39	0.97
1003621--1003675	24	2.3	24	84	6	67	60	3	0	36	1.15
1003949--1003973	13	1.9	13	100	0	50	64	0	0	36	0.94
1006045--1006070	13	2.0	13	100	0	52	7	15	0	76	0.99
1006322--1006377	15	4.0	13	77	13	58	5	14	1	78	1.00
1006338--1006399	19	3.3	18	78	12	54	1	12	4	80	0.94
1006341--1006398	11	4.9	12	72	18	50	1	13	5	79	0.98
1006383--1006662	91	3.1	89	76	11	304	30	15	9	45	1.78
1009332--1009393	30	2.1	30	96	0	115	43	14	6	35	1.71
1012622--1012735	43	2.7	43	88	0	165	42	7	4	45	1.53
1019952--1019994	22	1.9	23	85	4	61	48	9	0	41	1.35
1020138--1020167	11	2.7	11	100	0	60	6	20	53	20	1.67
1021053--1021129	12	6.2	12	71	16	59	10	0	10	79	0.95
1024340--1024385	21	2.2	21	84	0	56	39	13	26	21	1.90
1024991--1025023	7	4.9	7	92	7	59	27	0	27	45	1.54
1025083--1025146	29	2.2	28	83	8	83	20	0	39	40	1.52
1024983--1025145	14	11.7	14	72	10	79	22	1	31	44	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1024981--1025145	7	23.7	7	69	14	56	22	1	32	43	1.61
1027893--1027942	12	4.5	11	78	16	50	66	4	2	28	1.21
1028131--1028176	22	2.1	22	84	8	58	45	15	13	26	1.82
1028250--1028314	18	3.7	17	73	18	62	46	10	7	35	1.68
1028520--1028660	45	3.1	45	68	0	120	45	8	14	31	1.75
1028462--1028666	90	2.3	90	82	1	241	45	10	14	30	1.77
1028707--1028749	17	2.5	17	80	0	59	41	13	11	32	1.81
1029005--1029127	46	2.7	45	77	6	140	37	15	10	36	1.82
1029005--1029234	91	2.5	90	77	10	216	38	13	10	37	1.79
1032999--1033043	16	2.8	16	82	0	63	51	15	17	15	1.77
1036227--1036256	16	1.9	16	93	6	53	13	3	0	83	0.77
1043835--1043874	15	2.5	17	76	19	50	45	0	0	55	0.99
1045554--1045607	24	2.2	25	93	3	92	29	7	14	48	1.71
1049929--1049970	7	6.0	7	83	10	59	14	0	4	80	0.86
1050311--1050347	14	2.5	15	86	8	58	45	0	0	54	1.00
1050788--1050829	3	14.0	3	100	0	84	33	0	0	66	0.92
1051704--1051752	19	2.6	19	86	0	71	10	4	2	83	0.85
1051723--1051765	13	3.1	14	87	12	63	13	0	6	79	0.93
1051742--1051786	17	2.8	17	86	6	58	15	2	11	71	1.24
1052696--1052727	17	1.9	17	93	6	57	9	15	0	75	1.05
1064671--1064741	24	2.8	25	87	8	90	18	1	5	74	1.08
1064701--1064754	25	2.2	25	87	6	76	20	1	7	70	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1067239--1067266	5	5.6	5	100	0	56	17	0	17	64	1.30
1067828--1067859	17	1.9	16	93	6	55	68	0	0	31	0.90
1067693--1067999	145	2.1	149	81	11	373	50	6	7	36	1.55
1068404--1068436	3	11.0	3	93	0	57	66	3	0	30	1.06
1076088--1076295	108	1.9	108	87	1	301	29	24	14	31	1.95
1081824--1081883	16	3.8	16	71	4	50	38	15	6	40	1.73
1089461--1089495	18	1.9	18	94	0	61	31	0	0	68	0.90
1097497--1097534	11	3.5	11	88	0	58	21	2	26	50	1.62
1097559--1097714	51	3.0	52	83	3	190	40	8	25	26	1.83
1113602--1113644	19	2.3	19	83	0	50	16	13	23	46	1.83
1114095--1114120	7	3.7	7	100	0	52	88	0	0	11	0.52
1114290--1114314	8	3.1	8	100	0	50	84	0	0	16	0.63
1118934--1119027	16	5.6	17	83	15	108	74	0	13	11	1.07
1118947--1119010	7	8.9	7	80	19	62	75	0	14	10	1.06
1118934--1119019	9	9.8	9	81	15	85	73	0	13	12	1.10
1119597--1119825	80	2.9	80	82	1	246	38	6	19	34	1.79
1119601--1119915	79	4.0	79	82	2	328	37	6	21	34	1.80
1120278--1120349	33	2.2	33	85	5	92	26	12	20	40	1.88
1120623--1120905	43	6.5	43	78	5	264	26	10	17	45	1.81
1120623--1120906	130	2.2	130	82	3	329	26	10	17	45	1.81
1120708--1120905	87	2.3	85	82	3	243	25	10	17	46	1.80
1120710--1120940	43	5.3	43	82	4	214	25	11	16	47	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1120713--1120948	130	1.8	130	82	1	303	26	11	15	47	1.79
1121692--1121734	23	1.9	22	85	4	59	62	0	34	2	1.08
1122032--1122067	17	2.1	18	89	5	56	83	0	0	16	0.65
1122039--1122070	16	2.0	16	93	0	55	84	0	0	15	0.63
1122942--1123037	32	3.0	31	81	6	113	39	7	6	46	1.57
1123949--1123978	15	1.9	16	93	6	53	76	0	0	23	0.78
1124312--1124345	17	2.0	17	88	0	50	64	0	0	35	0.94
1124315--1124359	23	2.0	23	86	4	65	62	0	0	37	0.96
1132365--1132390	8	3.2	8	100	0	52	46	30	23	0	1.53
1136233--1136389	52	3.0	52	83	1	190	25	25	9	39	1.86
1136414--1136465	11	4.8	11	92	2	88	51	26	0	21	1.47
1138448--1138478	16	1.9	16	93	0	53	32	19	16	32	1.94
1141040--1141089	18	2.8	17	84	3	64	50	16	22	12	1.77
1142430--1142608	54	3.3	54	79	3	180	26	12	31	29	1.93
1148729--1148766	21	1.9	20	89	10	60	13	23	18	44	1.85
1156009--1156052	16	2.5	18	82	14	56	34	2	4	59	1.30
1165329--1165363	16	2.2	16	89	0	52	48	2	0	48	1.16
1168204--1168246	22	2.0	21	86	9	59	76	0	20	2	0.89
1168159--1168245	42	2.1	41	83	12	108	73	0	22	3	0.98
1168271--1168310	8	5.1	8	84	6	55	85	0	15	0	0.61
1168334--1168379	18	2.6	18	82	3	58	69	0	21	8	1.15
1169120--1169551	123	3.5	122	90	1	641	48	12	10	28	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1169447--1169893	138	3.3	135	77	10	427	50	11	10	27	1.71
1170139--1170213	38	1.9	40	86	5	109	54	5	13	26	1.60
1171497--1171635	24	6.1	23	71	16	103	54	8	1	35	1.40
1171579--1171624	20	2.2	20	88	3	65	56	10	2	30	1.46
1172316--1172349	12	2.7	13	90	4	52	70	8	0	20	1.13
1172588--1172631	21	2.0	22	86	4	63	77	0	22	0	0.77
1172561--1172625	29	2.2	30	78	10	71	76	0	21	1	0.86
1173729--1173753	13	1.9	13	100	0	50	24	16	8	52	1.70
1176189--1176218	5	6.0	5	96	0	51	0	36	0	63	0.95
1176189--1176222	15	2.3	15	85	5	52	0	35	0	64	0.94
1176747--1176797	26	2.0	25	84	3	66	78	1	13	5	1.02
1178880--1178930	16	3.1	17	75	8	52	43	0	5	50	1.26
1178876--1178944	31	2.2	30	80	12	77	39	0	8	52	1.33
1180047--1180079	12	2.6	13	85	9	50	51	12	3	33	1.54
1180127--1180161	11	3.2	11	83	0	52	42	28	0	28	1.56
1180128--1180184	22	2.6	22	80	0	60	40	24	5	29	1.77
1180584--1180870	143	2.0	140	93	2	484	49	8	16	25	1.74
1181149--1181190	14	3.0	14	89	0	57	4	2	40	52	1.35
1184142--1184382	118	2.0	119	88	3	353	51	11	0	36	1.44
1186272--1186331	28	2.1	28	87	6	86	63	0	0	36	0.95
1186313--1186353	8	5.0	8	90	3	55	75	0	2	21	0.92
1186318--1186355	17	2.2	17	86	13	51	81	0	2	15	0.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1186432--1186487	13	4.8	12	82	13	64	25	42	8	23	1.82
1186676--1186710	14	2.6	14	86	4	54	80	14	5	0	0.89
1194166--1194237	1	72.0	1	77	0	72	88	5	0	5	0.61
1194173--1194232	22	2.8	22	85	12	88	90	5	0	5	0.57
1195892--1196004	41	2.8	41	91	2	174	38	15	13	32	1.87
1196278--1196457	87	2.1	82	88	5	261	25	20	17	36	1.94
1196445--1196529	22	3.8	22	80	7	91	25	23	22	28	1.99
1196588--1196703	23	5.1	23	95	1	198	21	25	25	28	1.99
1196858--1196945	44	2.0	45	88	2	133	25	22	21	30	1.99
1196864--1196945	21	3.8	21	85	7	110	24	23	23	29	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106