genome.fa.s57.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167882.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_15, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22478863

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   

This is table  3  of  106  ( 12717 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
276391--276431	17	2.4	17	83	0	55	78	0	7	14	0.96
276970--277002	16	2.0	17	94	5	59	90	6	3	0	0.52
277085--277125	13	3.0	14	86	13	59	85	7	7	0	0.75
277342--277375	14	2.5	14	90	4	52	55	2	5	35	1.39
277895--277924	6	5.0	6	91	0	51	30	33	20	16	1.94
281959--281993	18	1.9	18	88	0	52	60	2	11	25	1.45
285559--285591	13	2.5	13	95	0	57	33	6	3	57	1.38
285815--285849	15	2.4	14	90	4	52	0	5	8	85	0.73
285809--285849	14	2.9	14	82	10	57	0	7	7	85	0.75
285932--285968	15	2.5	15	86	0	56	2	5	5	86	0.78
286506--286547	17	2.5	17	84	0	57	14	7	0	78	0.95
286721--287024	56	5.3	55	81	11	301	43	6	10	40	1.64
286721--287046	114	2.8	112	80	13	347	42	6	11	40	1.65
287654--287710	22	2.6	23	72	8	55	19	14	0	66	1.25
287918--287950	15	2.3	15	89	5	50	12	9	0	78	0.95
290969--291067	6	16.3	6	72	14	71	17	2	3	77	0.99
290961--291026	32	2.1	32	86	11	91	13	3	4	78	1.02
290970--291049	32	2.5	31	78	7	90	18	1	3	76	1.01
290960--291067	13	8.3	12	70	19	58	15	2	2	78	0.98
292111--292167	11	5.5	10	83	8	53	12	5	1	80	0.95
292097--292203	5	20.6	5	69	19	60	15	5	1	76	1.06
292116--292203	31	2.6	33	77	16	92	13	5	2	78	1.03
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
292118--292203	37	2.4	37	80	9	97	13	4	2	79	1.00
292200--292415	56	3.8	58	85	10	259	43	4	12	39	1.62
303225--303266	14	2.9	15	86	6	61	85	7	7	0	0.73
303486--303517	14	2.3	14	94	0	55	62	3	6	28	1.34
309387--309421	18	1.9	18	88	0	52	25	11	2	60	1.45
316248--316306	29	2.0	30	83	3	75	38	8	5	47	1.56
317108--317141	13	2.7	13	90	4	52	55	2	0	41	1.15
317170--317232	20	3.3	20	67	24	64	53	0	9	36	1.33
317164--317241	36	2.1	36	95	2	138	51	0	7	41	1.31
335948--336011	18	3.4	18	78	16	60	26	4	1	67	1.19
335923--336010	42	2.1	40	81	12	97	25	3	2	69	1.16
349370--349401	2	16.0	2	100	0	64	50	0	0	50	1.00
355343--355373	13	2.3	13	94	5	53	83	3	6	6	0.88
362829--362871	2	21.5	2	82	17	54	51	2	2	44	1.27
364695--364736	17	2.4	18	80	4	50	23	2	9	64	1.35
365168--365210	16	2.6	16	75	17	52	48	0	4	46	1.22
365376--365494	60	2.0	59	87	9	170	44	4	7	43	1.52
365692--365721	2	15.0	2	100	0	60	50	0	0	50	1.00
371434--371462	12	2.3	13	94	5	51	68	0	3	27	1.05
372044--372095	25	2.1	25	92	0	86	53	3	1	40	1.30
380604--380638	18	1.9	18	88	0	52	60	5	5	28	1.43
386922--386947	13	2.0	13	100	0	52	23	0	0	76	0.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
388835--388913	34	2.3	35	86	4	106	51	2	5	40	1.37
391000--391036	7	5.1	7	93	6	65	27	2	0	70	1.01
397217--397302	34	2.5	34	79	3	93	26	10	17	45	1.81
399216--399604	57	6.7	57	79	12	362	36	13	6	43	1.70
399622--399705	5	16.8	5	77	16	70	78	1	4	15	0.98
399622--399711	6	15.5	6	74	18	66	78	2	4	14	0.99
399622--399706	18	4.6	18	78	16	84	78	1	4	15	0.97
399746--399786	4	10.2	4	83	0	55	70	2	0	26	0.99
399737--399796	8	8.3	7	84	12	61	70	1	0	28	0.97
400201--400239	19	2.1	19	85	0	51	38	17	23	20	1.93
400719--400768	14	3.7	14	72	20	52	66	2	4	28	1.21
400681--400746	21	3.2	20	74	18	55	65	6	4	24	1.35
400719--400776	26	2.3	25	88	5	82	63	1	3	31	1.21
407938--408134	61	3.1	62	67	13	152	34	13	10	42	1.78
408836--408887	12	4.2	13	85	5	72	17	7	28	46	1.75
410470--410514	21	2.1	21	84	8	56	26	0	8	64	1.23
412181--412378	62	3.2	62	75	11	204	32	17	14	35	1.89
412130--412378	126	2.0	126	88	1	374	33	17	12	36	1.88
412137--412348	64	3.3	62	75	14	207	33	18	13	33	1.90
412630--412829	63	3.2	63	82	8	178	35	17	11	36	1.86
412691--412861	63	2.7	63	84	3	209	33	18	10	37	1.85
413618--413646	2	14.5	2	100	0	58	51	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
413939--413964	2	13.0	2	100	0	52	50	0	0	50	1.00
414028--414056	2	14.5	2	100	0	58	51	0	0	48	1.00
414058--414114	2	28.5	2	100	0	114	50	0	49	0	1.00
416137--416162	8	3.2	8	100	0	52	50	11	11	26	1.73
416137--416174	16	2.4	16	86	8	51	52	7	13	26	1.67
423261--423324	18	3.6	18	82	0	74	57	1	1	39	1.17
423346--423435	31	2.9	30	71	12	83	41	7	12	38	1.71
423491--423543	20	2.7	20	85	11	65	35	9	13	41	1.76
424562--424610	24	2.0	24	92	0	80	46	2	0	51	1.12
424616--424662	13	3.6	13	83	16	62	29	0	0	70	0.88
424612--424662	20	2.6	19	84	9	59	31	0	0	68	0.90
424613--424662	26	2.0	25	88	11	75	30	0	0	70	0.88
424724--424750	6	4.5	6	100	0	54	33	0	0	66	0.92
436737--436772	17	2.1	17	100	0	72	41	5	22	30	1.76
438630--438679	24	2.1	25	85	10	70	14	10	0	76	1.03
438863--438909	20	2.4	20	89	3	69	4	14	0	80	0.85
440983--441041	29	2.0	29	80	6	66	45	6	1	45	1.40
442074--442125	20	2.8	17	83	13	68	7	1	5	84	0.84
442074--442143	19	3.6	19	84	7	79	11	1	4	82	0.86
443749--443778	2	15.5	2	93	6	53	50	0	0	50	1.00
447307--447359	19	2.7	19	80	11	54	60	1	5	32	1.31
451102--451139	12	2.9	13	88	11	60	78	0	10	10	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
454573--454657	37	2.3	38	84	11	106	5	15	7	71	1.27
454632--454670	13	2.8	14	88	7	53	2	7	2	87	0.73
456990--457030	18	2.3	18	100	0	82	36	0	39	24	1.56
463278--463359	36	2.4	33	81	6	83	23	19	21	35	1.96
463097--463397	92	3.3	91	78	9	292	26	16	17	38	1.91
463548--464086	210	2.6	209	80	5	575	32	13	16	38	1.87
463759--464151	208	1.9	209	80	4	472	33	14	13	37	1.86
464027--464184	83	1.9	84	79	11	182	33	17	11	37	1.86
464428--464500	9	7.9	9	83	7	76	80	5	1	12	0.93
464460--464500	5	8.8	5	82	15	52	85	2	0	12	0.70
467638--467698	28	2.2	28	88	5	88	52	9	1	36	1.45
467645--467702	28	2.1	27	93	3	98	53	8	1	36	1.42
474294--474322	6	4.8	6	100	0	58	51	0	0	48	1.00
476011--476037	2	13.5	2	100	0	54	48	0	0	51	1.00
477795--477840	24	1.9	24	86	0	65	47	8	17	26	1.76
479881--479913	16	2.0	17	88	5	50	3	9	0	87	0.63
484429--484701	127	2.2	125	88	6	358	42	7	4	45	1.50
484468--484724	127	2.0	127	100	0	514	41	7	3	47	1.49
488402--488490	45	2.0	45	97	0	169	50	3	12	33	1.56
490592--490621	15	1.9	16	93	6	53	40	3	16	40	1.65
490586--490925	178	1.9	178	81	3	407	53	12	10	23	1.69
491107--491148	21	2.0	22	85	4	59	45	4	7	42	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
491151--491178	2	14.0	2	100	0	56	50	0	0	50	1.00
495906--495939	17	2.0	17	94	0	59	73	0	5	20	1.04
502771--502834	27	2.4	27	83	0	74	31	14	15	39	1.87
503335--503375	20	2.0	21	85	4	57	26	0	21	51	1.48
503414--503452	12	3.1	12	88	7	51	69	0	28	2	1.02
503810--504094	156	1.8	155	84	6	389	41	8	11	38	1.72
508064--508177	8	14.1	8	76	12	99	74	0	14	11	1.07
508077--508191	41	2.8	41	77	5	124	75	0	14	9	1.04
508139--508185	18	2.6	18	82	0	58	85	0	8	6	0.75
508066--508176	49	2.3	48	78	9	118	74	0	14	10	1.06

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106