genome.fa.s57.2.7.7.80.10.50.1000.30.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167882.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_15, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22478863

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   

This is table  30  of  106  ( 12717 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5568066--5568096	12	2.6	12	94	0	53	48	0	16	35	1.46
5568448--5569620	585	2.0	585	95	0	2132	31	16	17	34	1.92
5572146--5572317	92	1.9	91	80	3	202	38	10	15	34	1.82
5572385--5572420	18	1.9	19	94	5	65	69	2	0	27	1.02
5572385--5572422	9	4.2	9	80	12	51	65	2	0	31	1.06
5573616--5573665	5	10.2	5	79	10	50	78	16	0	6	0.95
5580531--5580586	27	2.1	27	89	0	85	48	5	17	28	1.69
5583474--5583525	23	2.5	20	84	15	61	82	5	5	5	0.94
5583474--5583525	20	2.5	20	87	9	68	82	5	5	5	0.94
5584341--5584764	48	8.8	48	81	3	444	28	12	19	39	1.88
5584332--5584764	144	3.0	143	82	5	507	29	12	19	39	1.88
5587233--5587268	17	2.1	17	100	0	72	66	5	5	22	1.34
5591264--5591321	21	2.7	21	94	2	98	53	22	10	13	1.70
5591832--5591908	39	2.0	39	87	5	111	14	1	61	23	1.41
5591835--5591919	39	2.2	39	82	2	107	16	1	58	23	1.45
5591936--5591967	15	2.1	15	100	0	64	9	0	56	34	1.32
5591875--5592024	77	2.0	76	92	2	248	15	0	60	24	1.36
5592231--5592266	19	1.9	18	88	5	54	36	0	5	58	1.22
5596325--5596449	18	6.9	18	73	13	105	32	35	4	27	1.78
5596329--5596371	21	2.0	21	90	0	68	25	41	2	30	1.68
5596404--5596437	15	2.3	15	89	0	50	38	35	2	23	1.70
5596353--5596450	33	2.8	35	84	4	137	36	31	5	26	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5600275--5600354	40	2.0	40	100	0	160	50	20	10	20	1.76
5609020--5609079	3	20.0	3	100	0	120	33	0	0	66	0.92
5609087--5609125	12	3.4	12	93	6	64	0	10	0	89	0.48
5609261--5609324	22	2.9	22	74	6	58	48	6	15	29	1.70
5610195--5610249	19	2.7	20	83	11	58	67	0	9	23	1.19
5615533--5615569	5	7.4	5	87	0	56	64	2	32	0	1.07
5619414--5619584	85	2.0	86	88	1	254	46	11	17	25	1.81
5632444--5632498	27	2.0	27	82	0	65	45	5	27	21	1.74
5641709--5641754	23	2.0	23	100	0	92	43	4	8	43	1.55
5641981--5643166	355	3.3	352	85	3	1517	35	13	14	36	1.85
5647708--5647733	13	2.0	13	100	0	52	38	38	0	23	1.55
5652099--5652234	55	2.5	55	83	0	173	29	11	13	44	1.80
5652852--5652978	68	1.9	68	85	3	175	41	14	7	36	1.75
5659724--5659763	21	1.9	21	89	0	62	50	20	7	22	1.73
5659816--5659983	64	2.7	62	76	6	167	32	19	8	39	1.82
5671244--5671276	10	3.4	10	87	4	50	69	0	3	27	1.03
5678118--5678221	45	2.3	44	78	3	109	22	26	22	28	1.99
5678312--5678412	46	2.2	46	76	1	105	25	30	19	23	1.98
5691343--5691383	20	2.0	20	85	0	55	29	26	21	21	1.99
5698359--5698495	43	3.2	43	79	7	154	27	13	14	44	1.82
5698359--5698495	42	3.2	43	83	7	156	27	13	14	44	1.82
5698479--5698510	15	2.1	15	100	0	64	31	6	6	56	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5698498--5698566	35	2.0	35	91	5	113	28	10	18	42	1.83
5699875--5699909	9	3.9	9	84	0	52	22	5	0	71	1.07
5703253--5703300	4	11.8	4	77	4	51	27	4	18	50	1.65
5703877--5703901	3	8.3	3	100	0	50	32	0	0	68	0.90
5705303--5705328	3	8.7	3	100	0	52	69	0	0	30	0.89
5720534--5720574	19	2.2	19	86	0	55	26	9	19	43	1.82
5720545--5720610	19	3.4	19	82	4	78	25	9	27	37	1.86
5720545--5720626	40	2.1	39	84	8	105	24	9	26	39	1.86
5720634--5720720	33	2.6	33	78	8	106	20	13	19	45	1.84
5722932--5722966	16	2.1	17	89	5	54	34	0	2	62	1.10
5722958--5723009	7	7.3	7	80	4	50	40	5	0	53	1.25
5722978--5723025	20	2.3	21	82	3	62	47	0	2	50	1.12
5723017--5723049	9	3.8	9	88	8	50	33	6	0	60	1.21
5723014--5723055	8	5.4	8	81	13	52	33	4	0	61	1.17
5723015--5723049	17	2.1	16	94	5	61	31	5	0	62	1.18
5723048--5723093	3	15.3	3	100	0	92	32	0	0	67	0.91
5725310--5725358	23	2.1	24	96	3	91	55	8	12	24	1.64
5728584--5728633	20	2.5	20	87	6	66	50	10	8	32	1.65
5733236--5733279	18	2.4	19	92	7	81	54	6	11	27	1.61
5733967--5734016	20	2.5	20	90	0	73	50	8	12	30	1.68
5736225--5736399	87	2.0	87	93	0	296	40	18	9	30	1.83
5736485--5736520	18	2.0	18	100	0	72	55	11	0	33	1.35
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5742133--5742195	33	1.9	34	87	6	94	34	14	14	36	1.86
5742688--5743024	145	2.3	145	80	3	347	33	17	11	37	1.86
5744323--5744362	3	13.7	3	94	5	73	70	0	0	30	0.88
5744321--5744363	20	2.2	20	100	0	86	72	0	0	27	0.85
5744326--5744359	17	2.0	17	100	0	68	70	0	0	29	0.87
5751056--5751089	2	17.0	2	100	0	68	50	0	0	50	1.00
5752088--5752128	15	2.8	15	82	17	59	78	0	17	4	0.93
5752609--5752641	11	2.9	12	86	13	52	87	0	6	6	0.65
5753815--5753858	24	1.9	23	82	17	56	34	6	18	40	1.77
5753946--5754114	41	4.3	39	70	9	137	46	20	6	26	1.75
5753946--5754114	79	2.1	79	85	4	225	46	20	6	26	1.75
5754297--5754358	32	1.9	32	86	0	88	37	19	12	30	1.89
5754525--5754568	18	2.4	18	96	0	79	29	22	11	36	1.89
5754627--5754658	16	1.9	17	93	6	57	87	0	12	0	0.54
5754627--5754664	10	3.9	10	82	3	51	86	0	13	0	0.56
5755080--5755133	22	2.5	22	87	0	72	35	33	9	22	1.86
5757342--5757409	3	22.7	3	96	0	127	69	0	0	30	0.89
5757522--5757570	11	5.0	10	75	20	50	69	4	0	26	1.06
5757522--5757570	14	3.7	14	80	20	61	69	4	0	26	1.06
5759540--5759578	3	13.0	3	100	0	78	33	0	0	66	0.92
5760413--5760466	5	10.0	5	79	15	54	18	1	1	77	0.95
5760413--5760466	11	5.0	10	80	13	54	18	1	1	77	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5760416--5760456	22	1.9	21	95	5	73	14	2	2	80	0.92
5760928--5760972	3	15.0	3	95	0	81	68	0	0	31	0.89
5761771--5761918	64	2.3	64	90	0	224	39	12	22	25	1.90
5762790--5763004	79	2.7	79	85	1	261	35	15	4	44	1.66
5764314--5764343	13	2.4	12	94	5	51	10	0	0	90	0.47
5764316--5764359	21	2.1	21	91	0	70	18	0	0	81	0.68
5764384--5764436	5	10.0	5	84	15	63	16	5	0	77	0.96
5764454--5764669	58	3.7	58	83	8	276	43	6	13	36	1.71
5768619--5768704	31	2.8	30	74	8	84	72	0	20	6	1.08
5768677--5768717	11	3.4	12	90	10	66	85	0	14	0	0.60
5768677--5768718	12	3.4	13	87	9	61	85	0	14	0	0.59
5770460--5770672	42	5.0	43	80	8	215	27	13	18	40	1.88
5770858--5771084	4	55.8	4	70	20	100	27	3	1	67	1.17
5770942--5771000	25	2.3	26	79	5	66	28	3	0	67	1.06
5770908--5771015	35	3.2	33	75	13	96	28	4	0	66	1.11
5770858--5771082	28	7.8	29	69	18	116	27	3	1	67	1.17
5770989--5771069	22	3.9	21	75	15	78	32	4	1	61	1.25
5771878--5771920	9	4.1	10	85	14	52	30	0	2	67	1.03
5771888--5771925	19	2.0	19	85	10	51	31	0	5	63	1.17
5771940--5772002	5	12.0	5	80	15	74	19	3	0	77	0.90
5772019--5772232	58	3.7	59	86	2	272	42	6	14	37	1.71
5772020--5772232	117	1.8	117	85	2	304	41	6	14	37	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5772659--5772719	30	2.0	30	96	0	113	34	19	19	26	1.96
5773268--5773532	129	2.0	131	92	2	446	12	27	10	50	1.71
5774307--5774367	23	2.7	22	75	9	61	22	22	22	31	1.99
5774466--5774622	67	2.4	61	77	13	145	34	13	17	35	1.88
5774870--5774948	22	3.6	22	81	3	88	25	18	21	34	1.96
5775007--5775160	32	4.8	32	76	7	105	30	15	20	33	1.93
5775088--5775325	34	7.2	33	72	10	148	29	14	19	36	1.91
5775111--5775193	33	2.5	34	86	5	107	27	14	22	34	1.93
5775148--5775327	97	1.8	98	81	10	226	30	13	19	36	1.90
5776276--5776372	4	23.0	4	72	16	54	3	18	3	75	1.07

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106