genome.fa.s57.2.7.7.80.10.50.1000.86.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167882.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_15, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22478863

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   

This is table  86  of  106  ( 12717 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17251611--17251668	31	1.9	29	86	6	80	50	0	0	50	1.00
17251618--17251680	25	2.4	27	81	7	76	55	0	0	44	0.99
17254121--17254188	28	2.3	29	82	7	84	54	2	0	42	1.15
17254673--17254701	15	2.0	15	93	6	51	51	0	0	48	1.00
17254678--17254717	21	1.9	21	84	0	53	65	0	0	35	0.93
17255663--17255693	14	2.2	14	100	0	62	12	0	0	87	0.55
17255682--17255800	55	2.2	55	87	0	166	30	11	10	47	1.75
17255896--17255942	24	2.0	24	83	8	60	42	2	0	55	1.12
17256078--17256113	15	2.4	15	95	0	63	63	13	8	13	1.50
17263667--17263855	99	1.9	99	86	0	270	34	19	6	39	1.77
17263806--17264226	233	1.8	233	82	3	542	30	15	15	38	1.89
17263806--17264301	234	2.1	233	79	4	525	31	15	15	37	1.89
17269031--17269098	26	2.4	30	76	13	74	47	1	1	50	1.19
17272809--17273111	154	2.0	154	81	4	362	37	6	10	45	1.64
17272979--17273237	63	4.1	61	83	9	299	39	5	6	48	1.53
17272979--17273237	126	2.1	126	86	7	357	39	5	6	48	1.53
17273336--17273466	69	1.9	68	83	7	167	49	6	6	38	1.52
17273530--17273560	13	2.4	13	94	0	53	25	12	0	61	1.32
17274867--17274922	29	1.9	29	88	0	85	46	3	0	50	1.19
17275200--17275437	124	1.9	124	88	5	356	44	9	1	45	1.44
17276396--17276756	191	1.9	192	81	10	436	47	7	10	34	1.66
17276744--17276961	121	1.8	121	83	6	289	53	8	9	28	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17276750--17276863	53	2.2	52	86	9	160	54	11	8	25	1.65
17280895--17280976	13	5.9	14	77	20	59	75	0	14	9	1.04
17280904--17281002	19	4.8	20	73	17	71	78	0	12	9	0.95
17280948--17281001	11	4.8	12	80	11	53	81	0	11	7	0.87
17280904--17280990	26	3.7	25	79	19	82	78	0	11	10	0.98
17280919--17281004	26	3.4	26	76	23	76	79	0	10	10	0.95
17280892--17280985	16	5.9	15	72	17	57	76	0	13	9	1.01
17282260--17282304	22	2.0	22	100	0	90	26	4	22	46	1.70
17282326--17282390	25	2.8	24	79	13	82	35	10	13	40	1.80
17282326--17282389	21	2.8	22	83	9	67	34	10	14	40	1.80
17282252--17282423	46	3.6	47	75	10	152	36	9	15	38	1.80
17282866--17283199	41	8.2	41	83	2	343	22	13	17	47	1.82
17282866--17283199	123	2.7	122	83	3	386	22	13	17	47	1.82
17283072--17283302	45	5.4	44	81	6	158	23	13	16	46	1.82
17284365--17284722	191	1.9	192	82	7	460	46	6	9	36	1.64
17284702--17284834	63	2.2	61	84	6	178	59	8	9	22	1.56
17286382--17286438	23	2.6	21	88	8	78	75	7	8	8	1.19
17288750--17288805	17	3.3	16	87	5	58	44	0	1	53	1.11
17291976--17292022	18	2.5	19	79	6	60	38	4	21	36	1.73
17295597--17295638	22	1.9	22	90	9	68	61	0	0	38	0.96
17302984--17303757	203	3.8	199	79	4	730	42	11	12	34	1.78
17303371--17303404	18	1.9	17	88	5	50	67	11	0	20	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17302984--17303757	202	3.8	202	78	4	726	42	11	12	34	1.78
17314622--17314652	16	1.9	16	93	0	53	74	9	6	9	1.23
17316250--17317441	235	5.1	234	87	3	1425	45	11	9	33	1.73
17318749--17318788	2	20.0	2	100	0	80	0	50	0	50	1.00
17318788--17318825	2	19.5	2	89	5	60	44	0	0	55	0.99
17330330--17330400	33	2.2	33	89	5	108	23	22	11	42	1.86
17330718--17330742	2	12.5	2	100	0	50	48	0	0	52	1.00
17331468--17331503	2	18.0	2	100	0	72	0	50	0	50	1.00
17335464--17335543	35	2.3	34	81	12	83	27	1	3	67	1.15
17336356--17336385	13	2.3	13	94	0	51	90	10	0	0	0.47
17336923--17336967	2	22.5	2	81	0	54	48	6	2	42	1.41
17336923--17336965	18	2.4	18	92	0	68	48	6	2	41	1.43
17336923--17336967	14	3.2	14	90	0	63	48	6	2	42	1.41
17342160--17342203	21	2.1	21	95	0	79	52	6	4	36	1.49
17343254--17345133	373	5.1	371	83	4	2136	36	11	10	41	1.76
17343254--17344955	187	9.1	185	84	4	1907	36	11	9	42	1.75
17343258--17344955	560	3.0	557	86	3	2235	36	11	9	42	1.75
17343254--17345101	747	2.5	744	84	4	2340	36	11	10	41	1.76
17344537--17344824	62	4.6	60	72	13	181	34	10	11	43	1.75
17344773--17345094	173	1.9	173	82	3	416	34	11	13	39	1.82
17345746--17345826	12	6.6	12	67	5	54	20	8	30	39	1.83
17345746--17345798	25	2.1	25	82	0	61	22	5	32	39	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17349004--17349072	35	2.0	35	85	0	93	36	14	13	36	1.85
17349267--17350025	305	2.5	302	80	8	786	36	13	12	37	1.83
17349269--17350022	308	2.5	301	79	8	781	36	13	12	37	1.83
17351148--17351189	2	21.0	2	100	0	84	50	0	0	50	1.00
17352555--17352598	2	22.5	2	95	4	81	47	0	0	52	1.00
17356184--17356231	6	7.5	6	79	11	51	77	14	4	4	1.08
17356184--17356228	13	3.5	13	79	11	56	75	15	4	4	1.12
17356443--17356530	42	2.1	42	93	0	149	44	6	10	38	1.65
17358421--17358475	24	2.2	26	83	6	69	45	5	7	41	1.55
17361764--17361810	24	2.0	24	91	0	76	36	14	8	40	1.77
17367653--17367685	5	6.6	5	100	0	66	0	18	0	81	0.68
17370761--17370800	3	12.7	3	94	5	62	0	32	0	67	0.91
17376621--17376653	16	1.9	18	88	11	52	42	0	6	51	1.26
17377308--17377381	31	2.4	31	83	2	94	45	6	4	43	1.49
17383083--17383157	38	2.0	38	100	0	150	21	28	5	45	1.73
17389078--17389114	4	9.2	4	100	0	74	48	24	0	27	1.51
17396135--17396209	39	1.9	39	94	0	132	42	8	9	40	1.66
17397403--17397431	14	2.1	14	100	0	58	68	6	0	24	1.13
17418284--17418324	2	20.5	2	100	0	82	51	0	0	48	1.00
17419693--17419897	105	2.0	105	90	0	320	28	16	13	41	1.86
17425789--17425823	3	11.7	3	100	0	70	31	0	0	68	0.90
17429639--17429716	27	2.8	27	79	11	77	50	0	1	48	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17432929--17432971	14	3.2	13	78	15	52	44	0	0	55	0.99
17432930--17432976	13	3.6	13	80	11	51	48	0	0	51	1.00
17432930--17432978	24	2.0	25	84	8	64	51	0	0	48	1.00
17433307--17433351	13	3.4	13	79	14	56	44	0	2	53	1.13
17435630--17435662	13	2.5	13	90	9	50	84	3	12	0	0.72
17438594--17438622	2	14.5	2	100	0	58	51	0	0	48	1.00
17439352--17439407	21	2.5	24	80	11	73	33	5	7	53	1.51
17440913--17440945	14	2.3	15	89	5	50	87	3	9	0	0.63
17447824--17447864	2	20.5	2	100	0	82	51	0	48	0	1.00
17453210--17453247	2	19.0	2	100	0	76	50	0	50	0	1.00
17455986--17456015	15	2.0	15	100	0	60	6	13	26	53	1.64
17456031--17456081	22	2.3	22	100	0	102	27	19	25	27	1.99
17475739--17475766	2	14.0	2	100	0	56	50	0	0	50	1.00
17477546--17477598	25	2.1	25	100	0	106	43	7	30	18	1.78
17495297--17495352	26	2.2	26	83	0	67	57	1	5	35	1.32
17499030--17499240	105	2.0	105	98	0	404	31	16	28	23	1.96
17505225--17505258	5	6.8	5	86	0	50	2	32	0	64	1.08
17512989--17513015	2	13.5	2	100	0	54	0	51	0	48	1.00
17513695--17513750	27	2.1	27	93	0	94	33	10	14	41	1.80
17515219--17515246	2	14.0	2	100	0	56	50	0	0	50	1.00
17516584--17516609	12	2.2	12	100	0	52	50	7	34	7	1.60
17522609--17522659	22	2.3	22	80	6	59	60	1	0	37	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17530353--17530384	2	16.5	2	93	6	57	53	0	46	0	1.00
17531764--17531815	2	26.0	2	100	0	104	50	0	50	0	1.00
17535947--17535980	17	2.0	17	100	0	68	23	17	29	29	1.97
17541206--17541470	126	2.1	128	79	6	281	40	6	6	46	1.54
17541349--17541494	64	2.3	63	83	8	172	38	5	10	45	1.61
17556997--17557081	36	2.4	34	82	7	91	58	2	2	36	1.24
17557210--17557247	15	2.6	15	95	4	69	28	0	0	71	0.87
17557229--17557274	22	2.1	22	83	0	56	47	4	0	47	1.21
17557688--17557734	13	3.4	14	78	16	53	72	0	2	25	0.96
17559973--17560043	36	2.0	36	94	0	124	43	15	9	30	1.79

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106