genome.fa.s57.2.7.7.80.10.50.1000.92.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167882.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_15, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22478863

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   

This is table  92  of  106  ( 12717 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19231598--19231671	27	2.9	27	76	13	68	55	0	1	43	1.08
19232775--19232817	17	2.4	19	84	7	54	32	0	4	62	1.15
19234140--19234174	3	11.7	3	100	0	70	34	0	31	34	1.58
19243392--19243431	21	2.0	20	85	5	53	30	12	5	52	1.60
19248085--19248130	24	1.9	24	90	0	74	41	2	2	54	1.25
19254276--19254328	3	17.7	3	88	0	79	26	37	35	0	1.57
19255043--19255094	16	3.4	16	75	17	56	51	0	0	48	1.00
19255043--19255087	23	2.0	23	90	0	72	48	0	0	51	1.00
19255045--19255094	23	2.2	23	85	0	64	52	0	0	48	1.00
19255569--19255602	13	2.6	13	85	0	50	70	2	0	26	1.01
19255735--19255759	12	2.1	12	100	0	50	44	0	0	56	0.99
19271441--19271482	18	2.4	17	84	7	57	50	0	0	50	1.00
19273019--19273064	20	2.3	20	88	0	65	58	8	4	28	1.47
19273446--19273571	63	2.0	63	92	0	207	46	6	10	36	1.63
19274568--19274598	2	15.5	2	100	0	62	48	0	0	51	1.00
19276005--19276037	16	2.1	16	94	0	57	72	0	0	27	0.85
19281823--19281852	15	2.0	15	93	0	51	50	0	3	46	1.18
19289253--19289319	33	2.0	33	97	0	125	47	19	2	29	1.64
19291865--19291899	16	2.2	16	94	0	61	20	45	5	28	1.73
19297444--19297474	15	2.1	15	93	0	53	48	0	3	48	1.17
19301557--19301593	1	37.0	1	100	0	74	100	0	0	0	0.00
19304926--19304992	33	2.0	33	94	0	116	49	19	2	28	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19307549--19307583	16	2.2	16	94	0	61	20	45	5	28	1.73
19310870--19310928	29	2.0	29	96	0	109	42	0	10	47	1.37
19312156--19312241	18	4.8	17	71	8	64	25	3	0	70	1.02
19312198--19312240	19	2.3	18	84	4	50	32	2	0	65	1.06
19312469--19312532	28	2.3	28	81	10	69	70	0	0	29	0.88
19312575--19312616	20	2.0	21	86	4	59	50	7	0	42	1.30
19315843--19315909	33	2.0	33	97	0	125	47	19	2	29	1.64
19318459--19318490	16	2.0	16	93	0	55	21	46	6	25	1.74
19319712--19319751	11	3.6	11	89	0	62	25	0	25	50	1.50
19319790--19319934	52	2.8	52	87	2	202	39	8	25	26	1.84
19322753--19322788	12	3.0	12	91	0	54	27	2	5	63	1.30
19323340--19323378	2	19.5	2	100	0	78	51	0	0	48	1.00
19336727--19336759	16	2.2	16	89	10	52	63	0	0	36	0.95
19338321--19338348	14	2.0	14	100	0	56	92	7	0	0	0.37
19344570--19344634	30	2.2	29	78	13	69	16	43	7	32	1.77
19345683--19345745	28	2.2	27	83	10	81	30	11	4	53	1.56
19346351--19346412	21	2.9	21	83	9	72	43	0	0	56	0.99
19349200--19349331	66	2.0	66	89	0	201	42	16	12	28	1.84
19362588--19362647	25	2.4	26	81	13	72	35	11	15	38	1.83
19362602--19362652	25	2.0	25	92	0	84	33	11	15	39	1.84
19363197--19363290	47	2.0	47	87	4	136	20	24	17	38	1.93
19370349--19370418	28	2.4	30	80	9	81	50	0	4	45	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19376301--19376484	94	2.0	93	93	1	314	30	10	22	35	1.88
19376519--19376583	31	2.1	32	85	2	87	43	1	6	49	1.37
19376617--19376696	28	2.8	28	86	5	108	51	1	0	47	1.08
19377704--19377743	20	1.9	22	90	10	66	15	7	0	77	0.98
19383089--19383150	31	2.0	31	96	0	115	35	4	22	37	1.76
19394292--19394324	15	2.1	16	94	5	59	51	0	0	48	1.00
19395382--19395414	14	2.5	14	90	9	52	60	0	0	39	0.97
19396073--19396124	15	3.3	15	73	7	50	50	3	7	38	1.50
19396659--19396712	3	18.0	3	86	7	74	62	3	33	0	1.12
19401927--19402305	128	2.9	127	82	8	413	35	14	13	35	1.86
19405868--19406251	131	2.9	130	86	4	515	34	12	15	37	1.85
19406766--19406821	15	3.5	15	72	25	51	66	0	3	30	1.09
19413522--19414745	320	3.8	322	91	2	1894	37	10	13	37	1.80
19413522--19414745	641	1.9	644	90	2	1955	37	10	13	37	1.80
19415577--19415640	25	2.6	25	84	0	83	21	7	28	42	1.81
19415544--19415638	12	7.5	12	71	17	59	23	7	28	41	1.81
19418726--19418802	35	2.2	35	88	0	109	33	19	12	33	1.90
19418947--19418990	18	2.4	18	85	7	63	31	9	13	45	1.75
19419184--19419301	59	2.0	59	84	0	155	28	12	21	37	1.90
19422854--19422888	12	2.9	12	100	0	70	42	14	25	17	1.86
19424921--19424946	13	2.0	13	100	0	52	30	15	15	38	1.88
19426410--19426451	21	2.0	21	85	0	57	28	14	16	40	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19426547--19426591	16	2.8	16	82	0	54	40	2	4	53	1.33
19432944--19433048	53	2.0	53	94	0	183	21	23	12	41	1.87
19436968--19437001	17	2.0	17	100	0	68	29	29	5	35	1.81
19442608--19442646	20	2.0	20	84	0	51	28	23	0	48	1.51
19444619--19444674	23	2.4	23	77	11	60	53	7	0	39	1.28
19444780--19444806	2	13.5	2	100	0	54	48	0	0	51	1.00
19446049--19446073	12	2.1	12	100	0	50	32	0	0	68	0.90
19454074--19454135	25	2.5	25	79	7	65	45	1	1	51	1.20
19463428--19463457	13	2.3	13	94	0	51	60	3	0	36	1.14
19465103--19465147	20	2.3	20	85	7	67	51	0	0	48	1.00
19465103--19465161	18	3.2	18	79	9	64	49	0	1	49	1.11
19465979--19466009	2	16.0	2	93	6	55	51	0	0	48	1.00
19466024--19466068	24	1.9	23	82	13	56	40	0	0	60	0.97
19466044--19466122	40	2.0	40	87	0	113	49	0	1	49	1.09
19470409--19470455	18	2.8	18	75	15	55	36	0	0	63	0.94
19470410--19470477	33	2.1	33	83	10	86	38	1	0	60	1.06
19470956--19471012	23	2.4	23	82	2	78	57	1	1	38	1.19
19470997--19471062	26	2.6	26	77	15	75	54	0	0	45	0.99
19471010--19471063	27	2.0	27	85	7	74	53	0	0	46	1.00
19471210--19471260	27	2.0	25	85	14	68	47	1	0	50	1.12
19474313--19474342	14	2.1	14	100	0	60	43	16	20	20	1.88
19489792--19489842	25	2.1	24	82	10	59	60	0	5	33	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19490685--19490714	2	15.5	2	93	6	53	50	0	0	50	1.00
19500531--19500566	13	2.6	15	79	20	51	41	0	0	58	0.98
19505994--19506160	29	5.6	30	73	7	153	46	11	8	32	1.71
19505994--19506154	30	5.4	28	76	8	117	45	12	8	33	1.73
19505994--19506160	59	2.8	59	86	4	230	46	11	8	32	1.71
19510466--19510503	17	2.1	18	85	9	51	44	0	0	55	0.99
19514183--19514236	25	2.2	25	86	6	74	31	18	7	42	1.78
19532434--19532490	27	2.1	27	90	0	87	31	43	5	19	1.73
19535363--19535439	39	2.0	39	92	0	127	33	38	3	23	1.73
19550429--19550456	2	14.0	2	100	0	56	50	0	0	50	1.00
19550655--19550695	16	2.6	16	88	0	55	51	24	0	24	1.49
19550657--19550699	20	2.2	20	86	0	59	51	27	0	20	1.48
19555727--19555756	3	10.0	3	100	0	60	33	0	0	66	0.92
19557186--19557310	64	2.0	64	80	6	146	35	8	4	52	1.49
19557463--19557505	6	7.3	6	89	5	61	65	0	4	30	1.13
19557530--19557562	5	6.6	5	86	13	50	78	0	0	21	0.75
19558376--19558507	13	9.6	14	68	21	59	70	0	5	23	1.12
19558376--19558485	17	5.9	17	72	21	78	71	0	5	22	1.06
19558388--19558494	39	2.7	39	75	17	112	69	0	4	25	1.14
19558373--19558525	63	2.4	62	77	13	161	69	0	5	24	1.13
19558517--19558544	5	5.6	5	100	0	56	64	0	0	35	0.94
19558746--19558966	45	5.0	44	78	6	171	41	16	14	27	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19558762--19559173	41	9.7	44	72	12	197	42	18	13	25	1.87
19559015--19559173	83	1.9	85	82	11	202	44	19	12	23	1.84
19559428--19559469	16	2.6	16	88	0	66	33	19	21	26	1.97
19560175--19560199	10	2.5	10	100	0	50	0	8	0	92	0.40
19571495--19571541	21	2.2	21	84	3	58	61	10	0	27	1.29
19571802--19571921	3	39.3	3	72	17	70	65	2	3	29	1.22
19571800--19571878	22	3.5	24	85	11	107	67	1	5	26	1.19
19571808--19571880	14	4.9	14	71	12	56	65	1	4	28	1.19
19571919--19571951	6	5.8	6	92	7	52	66	0	0	33	0.92
19572738--19572771	13	2.6	13	90	0	50	8	2	52	35	1.47

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106