genome.fa.s57.2.7.7.80.10.50.1000.67.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167882.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_15, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22478863

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   

This is table  67  of  106  ( 12717 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12145507--12145533	2	13.5	2	100	0	54	51	0	0	48	1.00
12145826--12146025	95	2.1	95	100	0	400	34	3	5	57	1.36
12146725--12146870	74	2.0	74	100	0	292	31	20	1	46	1.59
12156536--12156591	4	13.8	4	80	10	60	17	1	3	76	1.01
12156536--12156593	25	2.4	25	85	11	84	17	1	3	77	0.99
12156784--12156814	14	2.2	14	94	0	53	29	6	9	54	1.57
12156984--12157170	103	1.8	103	82	4	243	47	11	7	34	1.68
12157161--12157200	19	2.2	19	86	4	55	47	7	0	45	1.31
12157613--12157660	23	2.1	23	88	0	69	29	16	18	35	1.93
12163001--12163053	27	2.0	27	88	0	79	47	0	0	52	1.00
12162998--12163062	19	3.6	18	75	8	60	49	0	0	50	1.00
12163002--12163060	27	2.2	27	84	3	75	47	0	0	52	1.00
12163466--12163495	12	2.5	12	94	0	51	40	0	40	20	1.52
12170029--12170058	15	2.0	15	93	0	51	30	30	0	40	1.57
12174818--12174843	1	26.0	1	100	0	52	0	100	0	0	0.00
12177616--12177887	92	2.9	92	76	9	275	44	13	9	31	1.76
12177640--12177887	91	2.7	93	77	8	272	43	14	9	32	1.77
12178821--12178889	25	2.8	25	82	4	77	50	0	1	47	1.09
12179153--12179218	2	33.0	2	100	0	132	50	0	50	0	1.00
12183141--12183179	7	5.6	7	100	0	78	58	0	12	28	1.34
12183140--12183186	14	3.4	14	90	0	67	63	0	10	25	1.26
12183140--12183186	21	2.2	21	88	0	76	63	0	10	25	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12183535--12183575	20	2.1	20	86	4	57	41	24	4	29	1.75
12184246--12184294	21	2.3	22	75	10	57	67	4	2	26	1.19
12184704--12184738	18	1.9	18	88	0	52	48	5	5	40	1.51
12185166--12185328	44	3.7	43	74	17	136	40	17	8	33	1.80
12185224--12185300	22	3.5	22	82	8	102	44	14	7	33	1.74
12185224--12185528	46	6.7	45	68	10	147	42	13	6	37	1.70
12185175--12185463	90	3.2	88	74	8	231	44	14	6	34	1.71
12185851--12185912	24	2.7	23	75	12	63	41	27	12	17	1.86
12186583--12186615	12	2.8	12	90	4	50	9	9	0	81	0.87
12186878--12186915	20	1.9	20	84	10	51	7	15	2	73	1.17
12190531--12190565	17	2.1	16	89	5	52	65	2	5	25	1.28
12191645--12191682	14	2.7	15	88	12	62	84	5	5	5	0.88
12191614--12191702	13	7.2	12	72	15	56	82	6	3	7	0.95
12193302--12193717	212	2.0	210	84	0	481	44	14	8	31	1.75
12196016--12196067	21	2.5	21	90	6	79	50	0	0	50	1.00
12196016--12196067	22	2.5	22	93	6	90	50	0	0	50	1.00
12196032--12196099	30	2.4	27	75	15	64	58	1	0	39	1.07
12204201--12204227	14	1.9	14	100	0	54	37	33	7	22	1.82
12211927--12212004	30	2.7	30	90	7	119	30	19	0	50	1.48
12212488--12212520	14	2.2	16	89	10	52	30	0	6	63	1.18
12214400--12214459	2	30.0	2	100	0	120	0	50	0	50	1.00
12214813--12214877	33	2.0	33	81	0	76	33	10	12	43	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12215059--12215097	12	3.5	11	86	10	53	33	0	2	64	1.08
12219239--12219285	23	2.0	23	84	8	60	42	14	8	34	1.77
12219303--12219345	14	2.9	15	82	6	52	62	16	0	20	1.32
12219328--12219376	18	2.5	20	77	12	57	67	16	0	16	1.24
12219444--12219471	11	2.5	11	100	0	56	60	10	0	28	1.30
12221340--12221367	5	5.6	5	100	0	56	42	21	35	0	1.53
12222324--12222377	21	2.5	22	79	8	58	70	1	0	27	0.98
12223605--12223685	21	4.0	20	75	12	74	11	2	8	77	1.07
12234824--12234849	5	5.2	5	100	0	52	0	23	0	76	0.78
12235736--12235775	15	2.7	15	84	3	55	35	0	0	65	0.93
12235813--12235841	13	2.1	14	93	6	51	58	0	0	41	0.98
12240618--12240671	22	2.4	22	80	17	58	46	0	5	48	1.25
12244410--12244486	2	36.5	2	76	12	57	54	6	0	38	1.26
12244412--12244485	22	3.2	22	88	9	103	54	6	0	39	1.27
12244417--12244486	10	6.5	10	78	15	77	55	5	0	38	1.24
12244417--12244486	33	2.2	32	92	2	113	55	5	0	38	1.24
12244663--12244688	13	2.0	13	100	0	52	15	23	0	61	1.33
12245730--12245780	25	2.0	25	96	0	93	33	0	7	58	1.27
12245893--12245929	19	1.9	19	94	0	65	24	10	13	51	1.73
12245895--12245942	19	2.5	19	86	0	60	29	8	10	52	1.65
12246427--12246461	15	2.4	15	90	4	54	60	8	0	31	1.27
12246453--12246491	20	2.0	20	94	0	69	58	17	5	17	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12247936--12247987	26	2.0	26	100	0	104	50	11	19	19	1.77
12248821--12248874	27	1.9	29	85	7	76	51	0	0	48	1.00
12255352--12255427	39	2.0	39	92	2	127	35	13	19	31	1.90
12260971--12261036	34	2.0	34	84	3	89	51	6	4	37	1.47
12261045--12261110	34	1.9	34	87	6	98	40	19	7	31	1.80
12261047--12261133	35	2.5	34	80	9	86	43	18	3	34	1.67
12261109--12261139	14	2.2	14	94	0	53	38	9	0	51	1.35
12274098--12274130	14	2.3	15	89	5	50	39	0	3	57	1.14
12275478--12275576	49	2.0	50	90	5	157	36	15	15	33	1.88
12276143--12276208	26	2.6	25	81	13	89	46	1	3	48	1.26
12276229--12276272	19	2.3	18	84	7	52	56	0	0	43	0.99
12276348--12276420	38	1.9	37	86	8	103	46	2	1	49	1.24
12276385--12276424	17	2.5	16	88	8	55	45	2	0	52	1.14
12276561--12276601	19	2.3	19	87	8	59	53	0	2	43	1.13
12277324--12277663	168	2.0	169	99	0	673	34	7	8	49	1.62
12278087--12278144	21	2.8	20	81	5	71	27	24	13	34	1.93
12278170--12278209	17	2.3	18	83	12	57	55	0	7	37	1.29
12278649--12278685	18	2.2	18	85	9	51	40	0	5	54	1.24
12282792--12282995	110	1.8	111	91	5	342	51	8	11	27	1.67
12297470--12297569	49	2.0	49	94	0	173	19	16	21	44	1.87
12314146--12314188	21	2.0	21	100	0	86	62	0	0	37	0.95
12315535--12315565	13	2.4	13	94	0	53	0	12	3	83	0.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12315692--12315730	19	2.1	19	85	9	53	25	0	2	71	0.98
12315897--12315931	17	2.1	17	88	0	52	20	2	2	74	1.08
12324548--12324576	12	2.3	13	94	5	51	24	3	0	72	1.00
12324889--12324958	34	2.1	34	91	0	113	48	4	4	42	1.42
12325246--12325378	68	2.0	67	80	7	153	39	6	6	48	1.52
12325285--12325384	34	2.9	33	83	5	128	41	5	5	49	1.46
12325306--12325339	10	3.4	10	87	0	50	44	2	2	50	1.32
12329612--12329664	20	2.5	20	80	17	63	50	0	3	45	1.19
12329609--12329666	23	2.8	20	84	10	64	50	0	3	46	1.18
12329699--12329744	23	2.0	24	95	4	85	50	2	0	47	1.13
12330822--12330846	9	2.8	9	100	0	50	48	0	0	52	1.00
12335820--12335860	21	1.9	22	90	5	66	68	0	0	31	0.90
12336541--12336568	2	14.0	2	100	0	56	50	0	0	50	1.00
12342483--12342542	31	1.9	31	96	0	111	53	0	0	46	1.00
12342484--12342550	31	2.2	31	91	0	107	53	1	1	43	1.19
12343611--12343641	2	15.5	2	100	0	62	0	0	48	51	1.00
12358928--12358974	22	2.1	22	92	7	78	29	38	0	31	1.58
12365861--12365893	4	8.5	4	86	6	50	0	21	0	78	0.75
12365862--12365893	15	2.1	15	94	0	55	0	21	0	78	0.76
12367848--12367905	25	2.2	27	84	6	75	48	1	0	50	1.11
12367869--12367909	20	2.0	20	85	0	55	48	0	0	51	1.00
12367952--12368045	30	3.2	30	82	7	111	37	3	0	59	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12367982--12368025	24	1.9	22	86	9	61	31	2	0	65	1.05
12368270--12368312	17	2.6	16	79	13	52	53	2	0	44	1.13
12370816--12370854	2	19.5	2	94	0	69	48	0	51	0	1.00
12371757--12371810	27	2.0	27	100	0	108	51	14	11	22	1.73
12373677--12373931	126	2.0	126	97	0	483	34	19	18	27	1.95
12376184--12376223	2	20.0	2	100	0	80	50	0	0	50	1.00
12378985--12379048	15	4.2	15	81	2	56	28	0	23	48	1.51
12379005--12379048	15	2.9	16	86	10	65	36	0	13	50	1.42
12379741--12380093	189	1.9	187	79	10	398	47	6	9	37	1.61
12380166--12380355	58	3.4	57	73	12	178	53	7	12	27	1.64

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106