genome.fa.s57.2.7.7.80.10.50.1000.8.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167882.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_15, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22478863

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   

This is table  8  of  106  ( 12717 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1197010--1197073	23	2.9	22	86	4	85	25	23	20	31	1.98
1197145--1197186	22	1.9	22	90	0	66	21	19	26	33	1.97
1197244--1197449	48	4.3	49	84	3	274	29	12	23	33	1.92
1197558--1197598	3	13.3	3	84	5	55	63	0	0	36	0.95
1197606--1197646	8	5.0	8	90	3	55	75	0	2	21	0.92
1197611--1197648	17	2.2	17	86	13	51	81	0	2	15	0.80
1197702--1197772	34	2.1	34	84	5	90	25	52	8	14	1.69
1197914--1197959	21	2.2	20	96	3	83	69	17	13	0	1.19
1197931--1197973	14	3.1	14	75	0	50	67	16	13	2	1.33
1204674--1204717	9	4.7	10	86	13	51	27	0	6	65	1.17
1204679--1204743	16	4.1	15	76	9	67	29	0	3	67	1.05
1204685--1204792	8	13.8	8	71	21	52	34	0	4	61	1.17
1205208--1205261	25	2.2	25	83	6	65	38	5	18	37	1.74
1205809--1205893	6	13.7	6	68	19	50	15	7	1	76	1.06
1205845--1205893	16	3.1	15	80	8	53	16	6	0	77	0.96
1205910--1206088	58	3.0	59	87	4	261	46	5	12	36	1.63
1220467--1220505	19	2.0	21	85	10	55	33	0	0	66	0.92
1220485--1220556	30	2.3	31	78	4	83	41	0	0	58	0.98
1220526--1220574	22	2.2	22	89	7	73	44	0	0	55	0.99
1221346--1221391	14	3.2	14	77	22	51	56	2	0	41	1.11
1221331--1221399	21	3.4	20	80	15	70	55	2	0	42	1.15
1221354--1221396	19	2.4	18	88	7	61	55	2	0	41	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1221783--1221827	9	5.0	9	80	0	54	0	17	2	80	0.82
1221787--1221825	20	2.0	20	90	10	62	0	20	2	76	0.90
1221786--1221823	11	3.8	10	83	10	51	0	18	2	78	0.86
1222204--1222244	17	2.4	17	91	0	64	0	2	9	87	0.62
1222204--1222255	9	5.4	9	82	17	61	0	3	11	84	0.74
1222715--1222754	2	20.0	2	89	0	62	47	2	2	47	1.29
1223810--1223840	15	2.1	15	94	5	55	64	0	9	25	1.24
1237751--1237921	82	2.1	80	87	5	238	41	9	9	39	1.71
1246360--1246457	32	3.1	32	82	5	103	53	25	2	19	1.56
1246391--1246457	15	4.3	15	84	3	89	52	25	1	20	1.55
1248048--1248135	30	2.9	30	77	13	90	52	26	1	20	1.54
1248062--1248137	15	4.9	15	79	9	64	48	28	1	21	1.58
1255614--1255660	6	7.7	6	90	4	76	17	0	0	82	0.66
1255614--1255662	13	3.9	13	94	2	75	18	0	0	81	0.69
1255613--1255687	19	3.9	19	78	13	73	20	1	2	76	0.99
1256506--1256560	7	7.9	7	75	15	51	18	1	0	80	0.81
1256574--1256942	61	6.2	60	80	10	307	49	4	11	33	1.60
1260924--1261007	35	2.4	34	78	5	87	19	21	11	47	1.81
1260961--1261035	35	2.1	35	85	4	98	25	20	6	48	1.73
1267996--1268102	27	3.8	26	70	19	81	53	0	2	42	1.22
1267996--1268119	59	2.1	58	84	8	155	55	0	4	39	1.24
1270020--1270083	23	2.7	24	80	9	69	60	1	0	37	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1270022--1270091	22	3.1	22	70	22	56	62	1	0	35	1.04
1277535--1277578	2	22.0	2	85	0	61	45	0	6	47	1.29
1285008--1285040	17	1.9	17	93	0	57	57	0	9	33	1.30
1286484--1286531	22	2.2	22	85	3	62	62	6	2	29	1.31
1286646--1286743	18	5.2	18	68	19	65	57	1	1	40	1.12
1286646--1286757	22	5.2	22	71	21	85	57	0	0	41	1.11
1286646--1286760	40	2.8	39	75	18	110	56	0	0	41	1.11
1286703--1286816	27	4.4	26	74	12	92	55	0	0	43	1.05
1286709--1286815	55	1.9	55	90	5	171	53	0	0	45	1.06
1286667--1286815	18	8.8	17	72	18	107	55	1	0	42	1.13
1286711--1286806	42	2.2	41	77	17	97	52	1	0	46	1.07
1286870--1286899	13	2.3	13	94	0	51	46	0	0	53	1.00
1286843--1286928	19	4.9	18	73	19	67	46	1	0	52	1.08
1286863--1286959	15	6.3	16	65	24	57	47	1	0	51	1.07
1286864--1286931	35	1.9	35	82	11	86	47	0	0	52	1.00
1286902--1286972	25	2.8	25	87	8	99	47	1	0	50	1.09
1286909--1286972	26	2.5	26	90	5	96	48	1	0	50	1.10
1288186--1288323	72	1.9	72	85	2	188	56	19	9	14	1.65
1295855--1295897	21	2.0	22	90	4	70	34	2	0	62	1.08
1296073--1296233	74	2.2	75	91	1	261	44	13	7	35	1.71
1296105--1296473	163	2.3	163	78	5	399	44	10	7	38	1.66
1296425--1296782	184	2.0	184	92	1	596	36	13	9	40	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1300199--1300232	15	2.2	16	94	5	61	35	0	0	64	0.94
1302324--1302510	100	1.9	99	89	2	295	45	9	6	38	1.63
1307143--1307209	22	3.2	21	63	25	52	49	14	16	19	1.80
1307131--1307212	40	2.0	42	95	4	150	47	17	14	20	1.82
1316035--1316059	13	1.9	13	100	0	50	84	0	8	8	0.79
1327398--1328898	161	9.4	161	79	3	1436	33	9	14	42	1.79
1332191--1332229	20	2.0	20	94	0	69	46	17	0	35	1.49
1332703--1332764	24	2.5	25	77	15	65	56	1	3	38	1.25
1332753--1332852	31	3.2	31	64	20	82	47	10	6	37	1.62
1332727--1332852	62	2.0	62	98	0	243	48	8	6	36	1.60
1338954--1338981	14	2.0	14	100	0	56	28	28	0	42	1.56
1339068--1339127	28	2.2	27	85	8	77	45	0	1	53	1.10
1343595--1343638	22	2.0	22	95	0	79	31	11	13	43	1.80
1347667--1347710	22	2.0	22	86	8	63	31	11	13	43	1.80
1351006--1351055	23	2.1	25	85	14	70	52	0	0	48	1.00
1357026--1357085	26	2.3	26	82	5	68	51	3	10	35	1.52
1362645--1362684	21	1.9	21	90	10	64	30	35	0	35	1.58
1362605--1362673	33	2.1	33	83	0	84	27	34	1	36	1.66
1365928--1365985	25	2.3	27	88	8	86	50	1	6	41	1.39
1366174--1366223	26	1.9	26	83	0	64	56	2	4	38	1.30
1366920--1366987	21	3.2	21	89	6	102	47	0	1	51	1.09
1370525--1370579	21	2.5	22	85	5	76	49	10	5	34	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1370525--1370590	21	3.0	21	74	12	62	46	10	7	34	1.67
1370613--1370657	17	2.6	17	92	0	72	51	20	0	28	1.48
1370663--1370808	17	8.6	17	68	10	75	40	10	19	29	1.85
1371098--1371222	46	2.8	45	73	9	112	42	13	4	39	1.66
1372674--1372746	9	8.8	9	77	18	70	9	10	1	78	1.04
1372690--1372737	17	2.7	18	84	12	64	12	12	2	72	1.20
1372675--1372750	25	3.1	25	83	12	95	10	11	1	76	1.09
1376782--1376828	19	2.5	20	79	10	62	42	0	2	55	1.12
1378949--1379842	228	3.9	228	82	0	775	20	25	25	28	1.99
1380796--1380868	31	2.4	30	84	9	85	38	9	8	43	1.67
1382556--1382642	31	2.8	31	82	3	104	43	11	13	31	1.80
1382717--1382755	20	2.0	20	100	0	78	43	25	10	20	1.83
1383342--1383391	21	2.3	22	83	10	59	8	20	0	72	1.10
1383457--1383513	28	2.0	29	83	10	73	1	31	0	66	1.02
1384312--1384349	16	2.3	17	86	4	51	5	7	2	84	0.86
1384676--1384734	23	2.7	22	82	12	68	3	20	0	76	0.93
1384698--1384731	11	3.0	11	83	8	50	2	17	0	79	0.86
1384998--1385124	63	2.0	63	95	0	227	37	16	7	37	1.78
1385134--1385161	4	7.0	4	100	0	56	25	0	0	75	0.81
1387753--1387795	21	2.0	22	81	9	52	41	16	6	34	1.75
1392042--1392066	8	3.1	8	100	0	50	0	36	0	64	0.94
1392853--1392883	15	2.1	15	93	0	53	67	3	0	29	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1394300--1394354	27	2.1	26	86	3	74	36	1	0	61	1.06
1394312--1394354	18	2.5	17	81	7	52	32	0	0	67	0.91
1395053--1395615	228	2.5	227	79	2	565	29	25	23	20	1.99
1395756--1395809	22	2.4	23	96	3	101	9	14	14	61	1.57
1395784--1395921	41	3.4	41	87	2	188	8	14	15	60	1.57
1403007--1403077	21	3.4	21	70	18	67	25	4	32	38	1.75
1403007--1403099	42	2.2	42	90	3	143	26	7	30	35	1.84
1404498--1404535	7	5.6	7	82	17	53	55	0	0	44	0.99
1405550--1405593	13	3.4	14	76	23	51	34	0	0	65	0.93
1406023--1406047	13	1.9	13	100	0	50	56	24	0	20	1.43

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106