genome.fa.s57.2.7.7.80.10.50.1000.70.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167882.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_15, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22478863

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   

This is table  70  of  106  ( 12717 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12787081--12787117	2	18.5	2	100	0	74	51	0	0	48	1.00
12787314--12787354	2	21.0	2	95	5	75	48	0	0	51	1.00
12787784--12787841	8	6.3	9	79	15	57	77	6	1	13	1.05
12787796--12787845	17	2.9	17	80	8	57	80	8	2	10	0.99
12793639--12793673	9	3.9	9	88	0	52	88	0	5	5	0.63
12794825--12794854	15	2.1	15	93	6	53	46	0	0	53	1.00
12795859--12796388	99	5.3	99	78	5	503	24	12	19	43	1.85
12795859--12796362	199	2.5	201	85	3	642	24	12	19	43	1.85
12796622--12796671	17	2.8	18	85	11	59	80	2	2	16	0.91
12796631--12796671	9	4.8	8	83	16	55	82	0	2	14	0.76
12797755--12797797	21	2.2	19	83	8	50	32	0	0	67	0.91
12797755--12797791	19	2.0	19	89	5	58	32	0	0	67	0.91
12802666--12802743	31	2.5	31	77	2	86	33	24	8	33	1.87
12807569--12807599	2	15.5	2	93	0	53	54	0	0	45	0.99
12807786--12807815	2	15.0	2	92	0	51	53	0	0	46	1.00
12808458--12808489	17	1.9	17	93	6	57	53	0	0	46	1.00
12809129--12809154	12	2.2	12	100	0	52	42	15	19	23	1.89
12815289--12815316	2	14.0	2	100	0	56	50	0	0	50	1.00
12817059--12817092	14	2.4	14	90	0	50	35	8	2	52	1.47
12819915--12819970	15	3.6	16	79	15	55	67	7	3	21	1.30
12831794--12831832	2	20.0	2	84	5	53	48	2	2	46	1.29
12835098--12835128	3	10.3	3	100	0	62	35	0	0	64	0.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12836752--12836802	17	3.0	17	75	11	50	74	5	0	19	1.02
12839978--12840017	21	1.9	21	85	10	55	65	2	2	30	1.19
12840026--12840084	26	2.3	27	85	5	77	38	3	1	55	1.26
12840581--12840645	24	3.0	20	77	18	58	44	1	0	53	1.09
12849086--12849110	13	1.9	13	100	0	50	32	0	0	68	0.90
12849137--12849173	14	2.5	15	91	4	58	32	0	2	64	1.07
12849303--12849336	15	2.3	15	89	0	50	52	2	8	35	1.47
12857260--12857310	22	2.3	22	82	0	57	60	0	1	37	1.08
12857288--12857375	40	2.2	40	84	8	108	55	1	2	40	1.20
12857860--12857958	34	2.9	35	79	5	96	46	4	6	43	1.47
12858323--12858357	18	1.9	18	88	11	54	74	2	8	14	1.17
12867209--12867246	19	2.0	19	94	0	67	34	15	18	31	1.92
12867205--12867240	19	1.9	18	88	5	54	36	13	16	33	1.89
12868867--12868919	21	2.6	21	87	3	72	54	11	0	33	1.36
12870812--12870846	18	1.9	18	88	0	52	28	5	0	65	1.15
12874656--12874711	22	2.5	21	83	11	67	73	1	1	23	1.03
12874671--12874742	29	2.4	30	78	17	71	72	1	2	23	1.06
12874643--12874713	23	3.1	23	74	11	74	67	2	2	26	1.18
12875009--12875059	23	2.2	22	89	6	75	43	0	0	56	0.99
12875009--12875059	12	4.4	12	77	22	56	43	0	0	56	0.99
12875208--12875237	2	15.5	2	93	6	53	50	0	0	50	1.00
12876747--12876777	2	15.5	2	100	0	62	51	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12880239--12880300	31	2.0	31	87	3	90	50	6	4	38	1.50
12883589--12883668	29	2.7	30	84	1	108	45	7	0	47	1.31
12883653--12883702	17	2.8	18	70	14	50	46	0	2	52	1.12
12885089--12885145	29	1.9	30	86	10	82	36	1	5	56	1.32
12885078--12885146	30	2.3	30	80	14	79	31	1	7	59	1.33
12885896--12885983	28	3.1	28	76	16	74	64	1	0	34	1.01
12885918--12885979	31	2.1	29	85	11	81	64	1	0	33	1.03
12891077--12891125	12	4.1	12	89	0	62	36	46	16	0	1.47
12891083--12891134	6	8.7	6	89	8	79	34	50	15	0	1.45
12891070--12891134	18	3.8	18	82	13	75	38	47	13	0	1.43
12891140--12891165	3	8.7	3	100	0	52	34	34	30	0	1.58
12899894--12899925	3	10.7	3	100	0	64	65	0	0	34	0.93
12901401--12901684	141	2.0	141	97	0	541	41	9	27	20	1.84
12908065--12908156	27	3.5	26	76	15	84	48	0	0	51	1.00
12909010--12909060	26	1.9	26	88	4	75	41	0	7	50	1.31
12910171--12910212	19	2.2	20	91	4	68	52	0	7	40	1.29
12913052--12913113	27	2.3	27	81	10	72	41	0	1	56	1.09
12915587--12915704	61	1.9	62	87	1	175	36	15	13	34	1.87
12915587--12915731	62	2.3	62	83	2	175	33	13	16	36	1.87
12915772--12915894	64	1.9	65	81	1	149	33	12	12	42	1.79
12926479--12926513	15	2.3	15	90	0	52	65	11	5	17	1.43
12929188--12929233	22	2.0	24	87	8	69	54	4	10	30	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12932929--12932967	5	7.8	5	94	0	69	64	0	35	0	0.94
12941858--12941897	18	2.2	19	86	4	55	60	12	10	17	1.59
12946149--12946197	24	2.0	25	84	11	66	38	8	20	32	1.82
12949163--12949198	18	2.1	18	89	5	56	27	13	2	55	1.52
12952577--12952601	2	12.5	2	100	0	50	52	0	0	48	1.00
12952859--12952920	31	2.0	31	87	6	90	37	8	9	45	1.67
12954400--12954452	23	2.2	24	86	3	72	20	3	3	71	1.17
12954779--12954803	10	2.5	10	100	0	50	84	0	0	16	0.63
12958415--12958624	82	2.6	82	80	8	223	40	5	7	45	1.56
12964592--12964630	20	2.0	21	90	10	64	51	0	23	25	1.49
12964796--12964842	20	2.4	19	77	16	51	55	0	0	44	0.99
12969553--12969617	29	2.3	28	81	7	78	56	4	3	35	1.35
12969670--12969712	21	2.2	19	79	8	50	48	0	4	46	1.22
12969671--12969712	20	2.0	20	86	4	57	47	0	4	47	1.23
12969756--12969799	20	2.2	20	84	8	54	54	9	0	36	1.32
12969832--12969904	10	7.8	9	83	7	67	54	5	1	38	1.32
12969858--12969904	20	2.4	19	89	6	76	53	6	0	40	1.27
12969965--12970014	15	3.2	16	77	11	50	34	2	4	60	1.27
12970031--12970069	19	2.1	18	90	4	60	43	5	2	48	1.38
12970151--12970203	18	2.9	17	76	17	52	28	0	11	60	1.31
12970189--12970238	20	2.5	20	78	12	50	38	2	8	52	1.43
12970222--12970295	30	2.5	31	78	10	73	45	4	4	45	1.41
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12970330--12970392	19	3.3	19	88	2	90	34	0	9	55	1.32
12970506--12970558	22	2.5	21	85	8	72	35	1	9	52	1.45
12971473--12971498	3	8.7	3	100	0	52	30	0	0	69	0.89
12979129--12979201	35	2.0	35	81	5	83	39	5	5	49	1.49
12979290--12979385	49	2.0	45	82	11	111	59	2	2	36	1.21
12979652--12979680	3	9.7	3	100	0	58	31	0	0	68	0.89
12981971--12982005	13	2.7	13	100	0	70	57	0	31	11	1.34
12987260--12987317	21	2.9	21	71	16	52	62	0	3	34	1.12
12993580--12993633	22	2.4	23	75	6	56	42	3	9	44	1.54
12995439--12995511	33	2.2	33	97	0	137	20	8	12	58	1.59
12998486--12998544	23	2.5	24	78	16	68	62	5	13	18	1.48
12999747--12999788	17	2.6	16	80	3	57	26	4	11	57	1.54
13000600--13000660	26	2.3	27	78	10	65	42	4	4	47	1.46
13006053--13006092	17	2.2	19	86	8	57	77	5	10	7	1.11
13007448--13007487	11	3.5	11	83	6	53	12	0	17	70	1.18
13011545--13011655	42	2.6	41	81	5	141	22	25	4	47	1.70
13012199--13012262	32	2.0	32	90	0	101	31	7	7	53	1.58
13012774--13012992	42	5.2	42	77	6	194	52	15	8	23	1.69
13012782--13012993	84	2.5	83	80	9	234	52	15	8	24	1.69
13019097--13019208	24	4.9	23	81	8	131	19	4	2	73	1.13
13019097--13019208	23	4.9	23	78	12	106	19	4	2	73	1.13
13019153--13019251	31	3.3	28	80	14	92	17	7	2	73	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13025964--13026007	22	2.0	22	82	8	54	47	0	2	50	1.13
13028632--13028666	2	17.5	2	100	0	70	0	48	0	51	1.00
13029629--13029945	158	2.0	158	96	0	580	25	23	20	30	1.99
13031669--13031695	14	1.9	14	100	0	54	59	0	0	40	0.98
13031665--13031708	22	2.0	22	86	4	61	63	0	0	36	0.95
13036090--13036121	1	32.0	1	100	0	64	0	0	100	0	0.00
13039663--13039699	20	1.9	20	88	5	58	37	0	5	56	1.22
13039980--13040018	20	2.0	19	85	5	51	69	5	2	23	1.21
13042177--13042220	2	22.0	2	95	0	79	47	2	0	50	1.13
13050174--13050249	26	3.0	25	81	9	91	36	1	0	61	1.04

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106