genome.fa.s57.2.7.7.80.10.50.1000.98.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167882.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_15, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22478863

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   

This is table  98  of  106  ( 12717 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20819264--20819409	52	2.8	52	84	4	179	41	7	23	27	1.81
20820187--20820217	11	2.8	11	100	0	62	19	0	29	51	1.47
20820242--20820398	52	3.0	52	85	3	192	40	8	24	26	1.83
20827686--20828047	180	2.0	179	95	1	645	30	19	6	44	1.76
20828587--20828731	52	2.8	52	85	6	179	27	23	6	42	1.79
20828769--20828808	11	3.6	11	93	0	71	50	27	0	22	1.50
20829659--20829782	52	2.4	52	90	0	185	29	25	7	37	1.83
20829839--20829880	11	3.8	11	87	0	66	50	26	0	23	1.50
20832869--20832910	20	2.1	20	86	0	57	33	21	4	40	1.74
20833332--20833397	18	3.6	18	72	9	53	33	1	0	65	1.02
20834266--20834293	2	14.0	2	100	0	56	50	0	0	50	1.00
20835342--20835373	2	16.5	2	93	6	57	0	50	0	50	1.00
20836830--20836860	16	1.9	16	100	0	62	16	6	12	64	1.47
20849172--20849223	27	1.9	27	88	0	77	34	0	7	57	1.27
20849212--20849306	42	2.3	42	83	1	120	35	3	8	52	1.48
20849197--20849307	21	5.3	21	73	10	93	36	2	9	52	1.47
20850595--20850639	19	2.3	20	81	11	58	46	4	2	46	1.35
20850911--20851574	234	2.9	228	79	8	632	32	10	5	51	1.58
20855513--20855675	86	1.9	87	90	1	265	22	2	15	59	1.48
20858407--20858816	214	1.9	213	80	5	470	54	6	8	30	1.55
20858147--20859024	449	2.0	451	82	5	1091	53	5	8	32	1.55
20858571--20859140	235	2.4	232	78	7	524	53	4	9	32	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20858642--20859201	237	2.4	234	77	7	528	52	4	8	33	1.54
20859827--20859869	21	2.0	22	86	13	63	53	4	2	39	1.34
20860288--20860334	20	2.3	20	75	13	51	53	0	10	36	1.36
20858605--20860317	917	1.9	921	78	8	1871	52	5	9	32	1.58
20860492--20860524	16	2.1	16	94	5	59	63	0	12	24	1.28
20869074--20869106	15	2.1	16	88	5	50	57	0	15	27	1.38
20873078--20873174	36	2.6	38	78	9	108	53	7	9	29	1.59
20873793--20873839	8	5.4	8	90	9	58	42	0	0	57	0.98
20873797--20873834	10	4.0	10	86	13	62	47	0	0	52	1.00
20873793--20873839	18	2.7	16	81	18	58	42	0	0	57	0.98
20875288--20875322	9	3.8	9	85	7	52	11	2	0	85	0.69
20876107--20876136	15	2.0	15	100	0	60	33	0	0	66	0.92
20876990--20877032	2	21.5	2	90	0	68	51	2	0	46	1.13
20898013--20898043	2	15.5	2	93	0	53	48	0	0	51	1.00
20902433--20902462	2	15.0	2	100	0	60	50	0	0	50	1.00
20905262--20905322	8	7.9	8	83	7	54	52	9	0	37	1.35
20905259--20905308	12	4.2	12	89	0	64	52	8	0	40	1.31
20905274--20905310	2	18.5	2	94	0	65	54	0	0	45	1.00
20906036--20906065	15	1.9	16	93	6	53	63	0	0	36	0.95
20907706--20907746	17	2.4	17	91	0	64	14	2	2	80	0.92
20908032--20908061	13	2.2	14	94	5	53	20	0	3	76	0.92
20914547--20914872	171	1.9	171	85	1	447	38	11	12	38	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20918579--20918643	31	2.1	31	88	2	96	35	9	15	40	1.79
20920783--20920842	29	2.1	29	83	0	75	46	1	5	46	1.34
20920788--20921004	108	2.0	105	87	2	308	42	5	4	47	1.47
20920927--20920973	15	2.8	19	70	29	52	42	0	4	53	1.20
20920923--20920988	32	2.3	31	80	15	79	43	0	3	53	1.16
20927450--20927500	14	3.7	14	71	5	50	49	0	1	49	1.12
20927440--20927503	27	2.4	27	86	5	94	48	0	1	50	1.10
20928136--20928198	21	3.0	21	81	9	67	53	0	4	41	1.22
20928885--20928926	5	8.4	5	79	10	50	59	2	0	38	1.10
20928885--20928925	16	2.7	15	88	7	57	60	2	0	36	1.10
20928920--20928947	14	2.0	14	100	0	56	35	7	7	50	1.57
20935558--20935595	20	1.9	20	89	10	60	68	0	0	31	0.90
20938784--20938831	24	2.0	24	88	4	71	83	2	10	4	0.87
20938788--20938844	16	3.4	17	78	9	55	78	1	14	5	0.99
20940120--20940257	8	16.0	8	72	15	53	78	11	0	10	0.97
20940128--20940193	30	2.1	32	88	5	100	78	13	0	7	0.94
20940137--20940267	42	3.1	41	77	13	126	77	13	0	8	0.97
20940120--20940266	21	7.3	19	72	17	86	78	12	0	9	0.97
20944933--20944973	20	2.0	20	90	9	66	56	0	0	43	0.99
20944922--20944984	29	2.1	31	85	11	87	57	1	0	41	1.08
20944920--20944984	31	2.1	30	78	13	62	56	1	0	41	1.08
20944997--20945047	26	1.9	27	88	4	77	29	3	7	58	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20945291--20945344	26	2.1	26	82	6	65	33	9	5	51	1.57
20946420--20946451	13	2.4	14	90	10	50	31	0	0	68	0.90
20946419--20946462	22	2.0	22	82	8	54	31	0	0	68	0.90
20946413--20946561	30	5.0	30	81	7	135	38	4	1	55	1.29
20946457--20946561	30	3.5	30	86	2	140	42	6	0	49	1.35
20947601--20947642	2	20.5	2	86	13	59	45	0	4	50	1.23
20950836--20950907	36	2.0	36	97	2	137	30	20	15	33	1.94
20952201--20952383	92	2.0	89	88	5	269	31	15	19	33	1.93
20954416--20954459	22	2.0	21	82	4	52	29	4	0	65	1.12
20954493--20954524	15	2.1	15	100	0	64	6	0	25	68	1.12
20954969--20955045	22	3.6	21	77	12	68	77	9	0	12	0.98
20954969--20955023	21	2.6	21	78	18	60	76	7	0	16	1.00
20954991--20955042	20	2.6	19	79	8	59	75	11	0	13	1.06
20954970--20955048	26	3.0	26	77	3	77	78	8	0	12	0.96
20955937--20955979	23	1.9	23	85	4	61	67	6	13	11	1.41
20967264--20967319	11	5.0	11	77	12	60	33	5	0	60	1.19
20968116--20968178	33	1.9	33	93	0	108	28	17	17	36	1.93
20968119--20968193	33	2.3	33	88	0	105	29	16	14	40	1.88
20968150--20968504	136	2.6	135	81	4	419	28	12	17	41	1.86
20968150--20968528	134	2.8	134	79	2	418	27	12	17	41	1.86
20969220--20969250	16	1.9	16	100	0	62	38	0	22	38	1.54
20978378--20978584	80	2.6	79	85	3	279	27	7	23	42	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20983477--20983517	14	2.8	15	79	17	50	51	2	9	36	1.48
20989883--20989943	30	2.0	30	83	0	77	54	1	0	44	1.10
20996665--20996750	43	2.0	43	86	8	122	45	27	0	26	1.54
21000500--21000535	18	2.1	18	89	5	56	75	0	11	13	1.06
21000485--21000557	24	3.3	22	75	22	64	75	0	15	9	1.04
21000490--21000557	19	3.6	19	78	13	77	75	0	14	10	1.06
21000515--21000585	29	2.5	28	75	8	72	74	0	18	7	1.03
21000490--21000578	37	2.4	36	81	5	90	74	0	15	10	1.07
21001344--21001416	15	5.1	15	77	12	91	31	20	9	38	1.85
21001357--21001409	13	3.9	13	80	9	70	26	22	11	39	1.88
21001344--21001425	28	2.9	28	92	0	137	31	21	9	36	1.86
21001991--21002198	45	4.8	45	81	6	207	24	11	17	47	1.80
21001991--21002248	89	2.9	87	79	9	238	25	10	16	48	1.78
21002337--21002385	21	2.3	22	82	6	57	34	10	16	38	1.82
21002349--21002478	22	5.9	22	66	17	63	34	10	13	41	1.79
21002493--21002572	19	4.3	19	78	9	92	31	18	10	40	1.84
21002539--21002577	18	2.2	18	90	0	60	41	20	7	30	1.80
21002470--21002577	57	1.9	57	83	7	141	32	17	11	38	1.85
21002592--21002892	19	16.3	19	76	11	189	29	13	10	46	1.77
21002721--21002778	11	5.8	11	75	22	56	27	12	8	51	1.68
21002698--21002887	37	5.2	36	77	9	188	28	13	11	46	1.77
21002698--21002805	8	12.0	8	68	24	56	27	12	10	50	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
21003000--21003087	22	4.1	22	70	16	60	34	7	15	42	1.77
21003292--21003334	18	2.4	18	84	7	52	25	0	6	67	1.15
21004537--21004577	18	2.3	18	87	8	57	53	0	2	43	1.13
21004342--21004599	118	2.2	121	83	4	319	43	10	8	36	1.70
21004542--21004584	18	2.3	19	80	8	52	60	2	2	34	1.22
21006476--21006532	22	2.6	23	78	15	68	3	5	12	78	1.03
21007477--21007520	18	2.5	17	85	14	54	9	0	15	75	1.05
21011076--21011129	22	2.4	23	76	17	60	37	3	0	59	1.15
21011087--21011129	22	2.0	22	86	8	63	37	2	0	60	1.10
21011129--21011163	15	2.3	15	95	0	61	60	0	0	40	0.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106