genome.fa.s57.2.7.7.80.10.50.1000.71.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167882.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_15, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22478863

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   

This is table  71  of  106  ( 12717 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13052654--13052707	14	3.8	13	75	15	54	68	1	5	24	1.21
13052748--13052812	27	2.3	31	84	12	86	30	6	1	61	1.29
13052869--13052919	13	3.8	14	76	7	52	45	0	0	54	0.99
13062817--13062881	25	2.6	26	78	9	73	49	1	1	47	1.20
13065398--13065511	57	2.0	57	98	0	219	17	28	5	48	1.69
13067770--13068061	15	19.1	15	64	12	83	24	26	19	29	1.98
13067772--13068013	81	3.1	80	88	7	377	25	26	19	29	1.98
13067765--13068019	75	3.3	74	88	8	384	25	25	18	30	1.98
13067926--13068072	30	4.9	30	80	3	125	25	25	20	28	1.99
13077333--13077363	15	2.1	15	93	0	53	70	0	19	9	1.14
13078317--13078343	5	5.4	5	100	0	54	18	0	0	81	0.69
13080821--13080892	4	18.0	4	76	0	63	43	5	6	44	1.54
13080821--13080892	6	12.0	6	84	0	63	43	5	6	44	1.54
13087781--13087824	19	2.3	18	85	14	54	36	0	2	61	1.09
13089452--13089484	17	1.9	18	88	11	52	30	3	6	60	1.36
13092462--13092496	3	11.7	3	100	0	70	31	0	0	68	0.90
13097454--13097609	52	3.0	52	86	1	206	26	23	8	41	1.82
13097634--13097683	11	4.5	11	89	0	64	52	30	0	18	1.46
13097963--13098054	25	3.8	24	73	9	69	17	30	10	41	1.84
13097958--13098054	49	2.0	49	81	2	113	18	31	10	39	1.84
13100242--13100312	35	2.0	35	97	0	133	33	30	5	29	1.81
13100435--13100539	52	2.0	52	86	0	147	27	19	8	44	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13100566--13100627	11	5.6	11	96	0	115	51	27	0	20	1.48
13101714--13101758	23	2.0	23	86	0	63	64	2	0	33	1.06
13101695--13101779	23	3.6	24	74	12	61	63	3	3	29	1.28
13104097--13104121	4	6.2	4	100	0	50	0	24	0	76	0.80
13106223--13106341	59	2.0	59	93	0	202	36	18	15	29	1.91
13110271--13110427	52	3.0	51	83	3	170	26	25	7	40	1.82
13110713--13110798	25	3.5	25	82	9	95	19	34	6	38	1.79
13110835--13110914	31	2.6	31	90	4	126	28	25	17	28	1.97
13111408--13111552	52	2.8	52	86	2	184	26	24	8	40	1.83
13113361--13113410	15	3.3	15	83	13	50	70	0	0	30	0.88
13126172--13126219	25	1.9	25	83	8	62	68	8	2	20	1.26
13127455--13127479	5	5.0	5	100	0	50	60	0	0	40	0.97
13130929--13130959	10	3.1	10	95	0	53	58	3	0	38	1.15
13131079--13131130	26	2.0	26	88	3	77	42	0	7	50	1.31
13134169--13134201	14	2.3	15	89	5	50	57	0	3	39	1.14
13149223--13149273	12	4.5	12	71	14	54	47	0	0	52	1.00
13149810--13149840	8	3.9	8	95	0	53	6	29	0	64	1.18
13149810--13149848	8	4.9	8	93	0	51	5	28	0	66	1.12
13156984--13157037	21	2.6	21	86	13	76	51	0	0	48	1.00
13156984--13157036	23	2.5	22	90	9	83	52	0	0	47	1.00
13158682--13158806	4	31.2	4	76	0	97	42	6	6	44	1.55
13158682--13158806	6	20.8	6	76	0	97	42	6	6	44	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13158675--13158804	26	4.8	26	76	7	125	42	7	6	43	1.60
13186914--13186947	18	1.9	17	88	5	50	20	2	2	73	1.09
13194150--13194197	22	2.1	23	84	7	62	50	6	2	41	1.39
13194638--13194702	23	2.8	23	76	0	67	36	1	4	56	1.29
13197447--13197476	2	15.0	2	92	0	51	0	46	0	53	1.00
13198741--13198775	2	17.0	2	94	5	61	48	0	2	48	1.16
13199527--13199554	2	14.0	2	100	0	56	50	0	0	50	1.00
13208046--13208090	23	2.0	22	95	4	81	42	0	0	57	0.98
13208213--13208245	13	2.4	14	85	10	50	63	0	3	33	1.10
13208440--13208481	9	4.7	9	81	0	57	50	0	2	47	1.14
13208440--13208480	13	3.1	13	85	3	55	48	0	2	48	1.14
13209487--13209515	9	3.0	10	90	10	51	51	10	0	37	1.36
13223615--13223656	20	2.1	20	90	0	66	35	9	14	40	1.78
13247643--13247712	34	2.1	34	100	0	140	42	5	11	40	1.65
13248045--13248076	15	2.1	15	94	0	55	53	6	3	37	1.42
13248301--13248343	20	2.2	20	91	4	70	37	6	2	53	1.41
13251703--13251772	29	2.3	31	82	7	90	50	2	4	42	1.37
13253622--13253948	163	2.0	165	91	3	534	33	21	15	30	1.94
13254337--13254562	107	2.1	107	90	0	353	31	12	17	38	1.87
13266656--13266680	2	12.5	2	100	0	50	52	0	0	48	1.00
13273642--13273696	29	1.9	28	82	10	67	23	0	7	69	1.14
13275700--13275755	11	5.4	11	79	10	55	21	0	30	48	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13275852--13275889	19	2.0	20	89	5	60	44	2	2	50	1.30
13275997--13276034	20	2.0	20	89	5	60	31	7	10	50	1.66
13277045--13277096	27	1.9	27	84	0	68	28	15	13	42	1.85
13278217--13278247	2	15.5	2	100	0	62	48	0	0	51	1.00
13278449--13278484	2	18.0	2	100	0	72	50	0	50	0	1.00
13289204--13289234	16	1.9	16	93	0	53	41	0	0	58	0.98
13289204--13289238	16	2.1	16	89	5	52	42	0	0	57	0.99
13290191--13290245	28	2.0	28	81	0	65	47	0	1	50	1.11
13294791--13294877	35	2.5	35	82	0	111	36	24	6	32	1.82
13303502--13303533	3	10.7	3	100	0	64	65	0	34	0	0.93
13311301--13311329	15	2.0	15	93	6	51	41	6	10	41	1.66
13312986--13313015	11	2.7	11	94	0	51	30	0	3	66	1.07
13313629--13313653	1	25.0	1	100	0	50	0	0	0	100	0.00
13323064--13323117	21	2.7	20	77	5	65	48	24	7	20	1.75
13333083--13333668	296	2.0	296	98	0	1136	30	22	21	25	1.99
13340903--13340958	12	4.8	12	77	16	55	39	0	1	58	1.08
13340886--13340952	6	11.3	6	74	15	50	40	0	5	53	1.25
13341022--13341070	25	2.1	25	85	11	68	42	4	4	48	1.40
13342013--13342077	20	3.2	20	70	14	53	52	1	1	44	1.19
13342042--13342083	18	2.3	19	79	4	50	54	0	0	45	0.99
13343331--13343376	17	2.6	19	80	16	62	47	2	0	50	1.13
13343320--13343360	21	1.9	22	85	14	59	46	0	0	53	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13343878--13343978	34	3.0	35	82	4	109	45	2	7	43	1.48
13344333--13344363	6	5.0	6	96	4	53	64	0	0	35	0.94
13344408--13344459	15	3.3	15	75	20	52	51	0	1	46	1.12
13356720--13356829	54	2.0	54	100	0	220	32	20	9	37	1.84
13372140--13372178	6	6.5	6	100	0	78	33	66	0	0	0.92
13372731--13372773	15	2.8	15	76	16	52	13	4	62	18	1.48
13378373--13378438	32	2.1	32	97	0	123	37	12	10	39	1.77
13384874--13384948	23	3.3	23	67	14	55	52	5	0	42	1.24
13385218--13385257	21	2.0	21	90	5	64	52	0	0	47	1.00
13385223--13385269	21	2.2	22	77	11	53	53	2	0	44	1.12
13385619--13385653	16	2.1	17	89	5	54	57	0	0	42	0.99
13389419--13389461	21	2.0	21	86	8	61	60	0	4	34	1.17
13389992--13390071	41	1.9	42	89	2	126	36	0	3	60	1.15
13390003--13390078	23	3.5	23	73	25	74	39	0	3	56	1.18
13390102--13390145	23	1.9	23	81	9	54	54	0	0	45	0.99
13390694--13390745	21	2.5	22	93	6	90	51	0	0	48	1.00
13390732--13390781	16	3.1	16	79	0	55	64	0	0	36	0.94
13390718--13390783	30	2.2	30	81	10	73	59	0	0	40	0.98
13391307--13391384	26	3.0	26	71	15	63	41	0	2	56	1.13
13397303--13397361	23	2.6	23	71	10	57	52	5	10	32	1.57
13406314--13406356	2	21.5	2	100	0	86	0	48	0	51	1.00
13410937--13410961	13	1.9	13	100	0	50	16	16	40	28	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13411040--13411587	272	2.0	274	91	1	893	37	20	16	26	1.93
13412852--13412879	2	14.0	2	100	0	56	50	0	50	0	1.00
13429867--13429923	27	2.1	27	96	0	105	47	15	3	33	1.63
13431041--13431074	8	4.2	8	88	11	52	47	0	0	52	1.00
13431046--13431074	15	1.9	15	100	0	58	44	0	0	55	0.99
13431181--13431300	28	4.5	26	71	16	77	50	1	0	48	1.11
13431879--13431913	17	2.1	17	88	0	52	42	2	8	45	1.49
13444794--13444839	25	1.9	24	86	8	67	69	4	2	23	1.17
13446773--13446870	43	2.3	43	90	0	151	30	24	9	35	1.87
13447106--13447142	16	2.2	17	90	4	58	35	0	0	64	0.94

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106