genome.fa.s57.2.7.7.80.10.50.1000.25.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167882.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_15, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22478863

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   

This is table  25  of  106  ( 12717 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4590219--4590434	63	3.4	63	81	5	253	37	12	14	35	1.84
4593569--4593644	35	2.2	35	85	2	109	38	19	9	32	1.84
4607535--4607589	27	2.1	27	86	3	76	25	3	16	54	1.58
4607616--4607755	63	2.2	63	77	5	140	30	7	13	48	1.69
4608036--4608147	22	5.1	22	73	13	97	37	12	2	47	1.56
4608209--4608273	22	3.0	21	72	17	60	44	10	6	38	1.64
4608272--4608605	22	15.3	22	73	8	173	37	9	4	48	1.56
4608274--4608574	44	6.9	43	73	10	209	37	9	4	48	1.57
4608272--4608439	87	1.9	89	84	9	229	37	8	4	48	1.56
4608274--4608431	65	2.4	65	80	7	176	37	8	5	49	1.55
4608470--4608596	65	1.9	66	82	4	159	37	10	4	47	1.59
4609614--4609889	59	4.7	59	78	12	245	35	10	6	46	1.66
4609614--4609877	116	2.3	117	81	10	301	35	10	6	46	1.66
4609832--4610041	70	3.0	69	86	4	278	31	10	5	52	1.58
4611584--4612377	437	1.8	437	79	9	938	32	11	6	49	1.65
4611584--4612501	437	2.1	431	78	11	912	31	12	6	49	1.66
4612559--4612612	17	3.2	16	79	10	54	29	5	3	61	1.36
4612990--4613033	17	2.5	17	85	7	52	29	4	0	65	1.12
4612005--4614139	928	2.3	921	78	7	2151	31	11	5	50	1.62
4612541--4613263	211	3.4	212	75	10	519	32	11	3	52	1.55
4612940--4613354	219	1.9	220	80	5	491	32	11	4	51	1.58
4613518--4613560	17	2.5	17	84	0	50	30	0	6	62	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4614275--4614324	19	2.7	19	75	9	50	70	4	14	12	1.31
4618505--4618897	217	1.8	219	89	2	621	53	16	8	21	1.69
4620681--4620710	15	2.0	15	93	0	51	56	3	0	40	1.16
4623530--4623602	9	7.8	9	77	19	53	35	0	1	63	1.04
4624728--4624773	18	2.5	18	82	3	56	36	0	6	56	1.25
4630132--4630221	9	9.8	9	72	11	67	66	6	2	24	1.27
4630359--4630402	21	2.0	22	82	4	54	63	0	6	29	1.20
4630381--4630432	26	1.9	26	84	7	68	57	5	3	32	1.40
4630492--4630532	18	2.3	19	87	8	59	63	2	4	29	1.28
4630575--4630630	27	2.1	26	83	9	69	30	7	3	58	1.42
4630724--4630805	41	2.0	41	83	7	103	31	2	1	64	1.14
4631279--4631318	21	1.9	21	84	0	53	22	5	17	55	1.61
4634413--4634759	139	2.5	139	83	4	396	25	11	12	51	1.72
4637481--4637540	31	1.9	32	89	3	95	35	16	23	25	1.95
4637678--4637739	22	2.8	22	82	4	72	35	19	14	30	1.92
4637822--4638187	42	8.4	42	73	14	240	29	12	15	42	1.83
4637872--4638187	133	2.4	133	84	3	395	29	12	15	42	1.83
4637910--4638089	91	2.0	91	81	6	213	28	13	15	42	1.84
4637872--4638233	133	2.7	132	81	6	392	30	11	15	43	1.82
4638126--4638257	43	3.1	43	75	7	126	28	9	15	45	1.79
4638333--4638454	44	2.8	44	81	5	122	31	13	16	37	1.88
4640239--4640405	86	1.9	86	92	0	280	40	7	11	41	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4643741--4643819	30	2.6	30	84	7	115	21	7	29	41	1.80
4650587--4650638	21	2.5	21	100	0	104	38	32	3	25	1.74
4652320--4652350	16	1.9	16	100	0	62	25	12	6	54	1.62
4653370--4653652	141	2.0	141	99	0	557	34	6	20	38	1.78
4655284--4655355	16	4.6	16	78	15	62	73	2	2	20	1.08
4655738--4655786	24	2.0	26	84	8	66	38	16	6	38	1.73
4658019--4658149	46	2.9	44	77	15	124	40	18	12	29	1.87
4658251--4658500	51	5.0	49	77	7	225	42	16	12	28	1.84
4658253--4658499	101	2.5	100	82	5	302	42	16	12	28	1.84
4659510--4659636	57	2.2	57	84	0	155	44	22	9	23	1.82
4660214--4660282	22	3.3	20	80	13	77	5	14	7	72	1.25
4661186--4661241	24	2.3	24	100	0	112	33	23	0	42	1.54
4662373--4662421	22	2.2	23	82	10	57	8	10	4	77	1.10
4665375--4665413	20	2.0	20	84	0	51	58	12	7	20	1.58
4667085--4667125	12	3.5	11	83	9	55	26	14	0	58	1.37
4671605--4671638	17	2.1	17	94	5	61	8	0	14	76	1.01
4673088--4673322	126	1.9	124	80	3	274	36	11	13	39	1.80
4673242--4673391	63	2.4	64	81	5	155	44	7	11	37	1.68
4673278--4673415	63	2.2	63	83	7	174	42	10	10	36	1.72
4673296--4673445	63	2.4	63	82	3	167	42	9	10	38	1.71
4675580--4675624	21	2.1	21	84	8	56	26	2	6	64	1.30
4683025--4683204	73	2.5	72	81	4	209	34	21	21	23	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4688171--4688205	16	2.2	16	89	0	52	34	11	11	42	1.77
4689784--4689965	72	2.5	72	79	7	174	34	22	19	23	1.96
4691251--4691447	13	15.4	12	70	16	89	45	34	0	19	1.54
4691251--4691416	7	25.3	7	69	15	79	46	33	0	20	1.51
4691255--4691418	59	2.8	57	81	9	188	45	34	0	20	1.52
4691291--4691399	33	3.3	32	76	14	98	44	34	0	21	1.52
4692614--4692655	20	2.2	20	87	8	61	28	2	4	64	1.26
4693555--4693833	37	7.6	37	75	6	154	35	20	9	34	1.85
4696941--4697025	7	10.9	7	72	18	53	76	1	17	4	1.02
4696940--4697026	15	5.5	15	72	17	59	77	1	17	4	1.01
4696980--4697046	16	4.8	14	74	20	52	76	0	19	4	0.96
4696940--4697026	8	10.9	8	70	14	54	77	1	17	4	1.01
4697383--4697408	9	2.9	9	100	0	52	88	0	0	11	0.52
4699457--4699560	40	2.6	39	80	3	118	31	9	16	42	1.80
4700002--4700040	20	1.9	21	94	5	71	84	2	2	10	0.81
4700471--4700784	135	2.3	137	78	12	329	33	11	13	41	1.81
4702323--4702488	20	8.1	20	76	11	122	43	37	1	16	1.59
4702339--4702477	7	20.7	6	72	17	80	44	36	1	17	1.58
4702339--4702477	13	10.3	12	70	18	80	44	36	1	17	1.58
4702322--4702486	40	4.0	44	75	9	136	43	37	1	16	1.59
4706634--4706675	14	3.0	15	80	13	54	21	0	4	73	1.01
4713533--4713591	31	1.9	31	85	0	82	23	11	13	50	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4714243--4714281	17	2.3	17	95	0	69	56	0	10	33	1.33
4722672--4722704	18	1.9	17	88	11	50	18	21	3	57	1.53
4726408--4726503	48	2.0	48	97	0	183	21	12	13	52	1.74
4740849--4740911	17	3.6	17	75	14	58	26	3	9	60	1.43
4740917--4741011	49	1.9	49	83	10	122	24	12	5	57	1.55
4740966--4741034	16	4.3	15	73	12	50	28	11	5	53	1.60
4740972--4741072	48	2.1	49	85	9	136	29	10	4	54	1.56
4740974--4741035	32	2.0	31	87	3	88	30	11	6	51	1.63
4740977--4741043	17	4.1	17	70	16	61	31	11	5	50	1.63
4740932--4741072	49	2.9	48	80	12	155	29	11	4	54	1.55
4740979--4741086	49	2.2	49	82	8	123	30	11	5	52	1.59
4741052--4741089	16	2.2	19	86	13	55	26	5	5	63	1.37
4741085--4741132	24	2.0	23	96	4	87	25	8	10	56	1.61
4744124--4744167	15	2.8	17	80	16	58	29	11	6	52	1.63
4744108--4744169	16	3.9	16	73	12	56	30	9	8	51	1.63
4744836--4744870	18	2.0	18	88	5	54	14	2	14	68	1.32
4747275--4747310	18	1.9	19	88	5	56	13	5	33	47	1.67
4753157--4753229	21	3.5	20	75	16	67	80	1	16	1	0.85
4753157--4753229	22	3.5	20	75	16	67	80	1	16	1	0.85
4753698--4753771	25	3.0	24	75	19	73	74	2	18	4	1.10
4753743--4753775	12	2.6	13	85	9	50	81	3	15	0	0.80
4754453--4754511	22	2.7	22	92	5	93	30	11	16	40	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4754749--4754885	28	4.6	29	70	13	91	32	17	16	33	1.92
4754744--4754889	56	2.4	59	78	15	149	33	17	16	32	1.93
4754684--4754857	32	5.7	32	71	13	143	32	17	17	32	1.94
4755171--4755425	32	7.8	31	73	11	122	35	20	13	30	1.91
4755275--4755423	32	4.6	32	73	12	135	35	16	14	32	1.90
4755350--4755436	32	2.7	31	75	7	84	33	16	18	32	1.93
4756043--4756083	9	4.4	9	90	3	55	68	7	0	24	1.15
4756043--4756144	28	3.7	27	70	22	79	65	3	0	30	1.10
4756631--4756881	122	2.1	122	92	0	421	44	11	15	29	1.81
4757140--4757200	25	2.5	24	84	12	79	19	24	6	49	1.72

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106