genome.fa.s57.2.7.7.80.10.50.1000.56.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167882.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_15, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22478863

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   

This is table  56  of  106  ( 12717 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9862580--9862629	18	2.8	19	76	8	52	64	2	0	34	1.05
9863163--9863200	11	3.2	12	81	11	51	60	0	0	39	0.97
9863161--9863209	25	2.0	25	84	8	64	67	0	0	32	0.91
9863356--9863387	15	2.1	15	94	0	55	50	12	3	34	1.56
9865819--9865866	25	1.9	25	95	0	87	12	22	18	45	1.83
9867163--9867202	3	13.3	3	100	0	80	32	0	0	67	0.91
9869733--9869813	40	2.0	40	97	0	153	50	3	14	30	1.60
9870975--9871000	2	13.0	2	100	0	52	50	0	0	50	1.00
9872645--9872708	31	2.1	31	93	0	110	28	14	23	34	1.93
9873734--9873818	43	2.0	42	88	2	125	27	18	14	40	1.89
9874256--9874302	24	2.0	22	84	8	58	44	0	2	53	1.12
9879399--9879571	85	2.0	85	97	0	328	43	6	15	34	1.71
9879541--9879605	24	2.6	25	83	9	80	49	1	1	47	1.20
9884175--9884200	11	2.4	11	100	0	52	50	0	0	50	1.00
9888221--9888267	4	11.2	4	86	8	67	46	2	0	51	1.13
9891856--9891895	2	20.0	2	84	0	53	52	5	0	42	1.23
9904367--9904407	17	2.4	18	76	12	50	68	0	26	4	1.10
9904556--9904599	19	2.6	16	82	10	52	47	0	4	47	1.22
9906313--9906361	16	3.0	17	80	14	59	44	0	0	55	0.99
9907421--9907498	38	2.2	36	84	13	101	41	7	6	44	1.58
9907732--9907778	18	2.7	18	83	3	60	51	0	0	48	1.00
9907732--9907781	6	8.5	6	79	16	52	52	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9908748--9908784	17	2.2	17	90	0	56	32	13	32	21	1.92
9908717--9908894	88	2.0	89	94	1	313	32	13	18	35	1.90
9917084--9917117	14	2.3	15	90	5	52	44	2	2	50	1.32
9917424--9917466	21	2.0	23	86	9	63	32	2	0	65	1.06
9917424--9917497	22	3.4	22	74	20	59	29	2	1	66	1.14
9917433--9917497	21	3.1	20	79	16	69	27	1	1	69	1.07
9918118--9918146	3	9.7	3	100	0	58	31	0	0	68	0.89
9929104--9929424	164	2.0	164	89	1	500	33	17	16	32	1.93
9929330--9929554	123	1.8	123	90	0	360	35	16	16	32	1.91
9930852--9930899	21	2.3	22	85	7	64	58	0	6	35	1.23
9936811--9936851	18	2.3	18	87	4	57	39	0	0	60	0.96
9937636--9937668	2	16.5	2	100	0	66	48	0	0	51	1.00
9938453--9938490	2	19.0	2	94	0	67	47	0	0	52	1.00
9938964--9939002	18	2.3	16	86	8	51	46	2	0	51	1.14
9941873--9941908	2	18.0	2	88	0	54	50	5	0	44	1.25
9941943--9942004	27	2.3	27	76	17	67	48	4	3	43	1.40
9941981--9942020	20	2.0	20	85	5	53	45	2	0	52	1.14
9951552--9951585	17	2.1	17	88	5	52	38	2	0	58	1.13
9952658--9952696	11	3.5	11	82	6	51	61	2	0	35	1.10
9957182--9957232	20	2.6	21	84	9	63	56	1	0	41	1.10
9958434--9958475	21	2.0	21	95	0	75	47	9	26	16	1.77
9962117--9962152	2	18.0	2	100	0	72	50	0	50	0	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9963075--9963099	2	12.5	2	100	0	50	48	0	0	52	1.00
9963354--9963394	22	1.9	22	85	14	59	65	0	2	31	1.05
9964924--9964951	2	14.0	2	100	0	56	50	0	0	50	1.00
9967220--9967255	11	3.4	11	88	7	56	22	5	0	72	1.05
9968023--9968074	24	2.2	23	90	6	86	76	0	3	19	0.93
9968019--9968080	21	3.0	21	78	7	72	72	0	4	22	1.03
9968024--9968080	24	2.6	21	86	8	69	73	0	3	22	0.98
9968019--9968164	46	3.3	44	76	11	106	69	1	3	25	1.11
9968093--9968157	4	15.8	4	74	17	53	70	0	0	29	0.87
9968356--9968398	20	2.2	20	83	8	52	2	2	13	81	0.89
9968425--9968664	44	5.5	44	81	4	234	41	20	14	24	1.89
9968475--9968758	86	3.3	86	77	5	243	41	22	13	23	1.88
9968429--9968704	130	2.1	131	82	3	324	41	21	13	23	1.88
9968475--9968817	44	8.0	41	79	5	229	43	20	12	23	1.86
9968630--9968817	82	2.2	84	81	4	209	46	19	11	22	1.81
9968630--9968819	41	4.5	42	80	5	161	46	18	11	22	1.81
9969118--9969199	43	1.9	42	90	7	130	32	17	12	37	1.86
9969383--9969441	22	2.7	23	81	7	77	35	20	6	37	1.79
9970636--9970672	15	2.5	15	91	4	58	10	24	0	64	1.25
9977300--9977354	25	2.2	25	80	9	58	40	7	5	47	1.54
9977918--9977959	22	1.9	22	90	0	66	66	9	2	21	1.32
9978201--9978351	52	2.8	52	76	16	148	69	1	3	25	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9978203--9978368	7	23.6	7	69	24	50	71	1	3	24	1.08
9978293--9978335	12	3.5	13	90	9	72	62	0	0	37	0.95
9978197--9978370	77	2.2	78	77	10	176	71	1	3	23	1.08
9980700--9980740	8	5.4	8	80	11	50	24	0	19	56	1.42
9980707--9980762	15	3.9	15	83	9	71	23	0	25	51	1.48
9980709--9980762	14	3.8	14	87	2	72	22	0	25	51	1.48
9998834--9998903	35	2.0	35	82	0	86	34	11	17	37	1.85
10002094--10002165	12	6.0	12	75	12	58	41	27	8	22	1.82
10002091--10002151	23	2.5	24	89	7	88	42	27	9	19	1.83
10002146--10002180	12	2.9	12	91	0	52	34	22	11	31	1.90
10002844--10002877	13	2.6	13	90	0	59	55	20	0	23	1.43
10002898--10003512	188	3.3	187	84	3	747	42	10	10	36	1.74
10003361--10003666	154	2.0	153	84	5	404	43	10	9	37	1.71
10011749--10011815	33	2.0	33	82	0	80	35	14	11	37	1.84
10012223--10012252	12	2.5	12	94	0	51	43	0	6	50	1.28
10020079--10020174	3	31.3	3	70	10	61	31	4	5	59	1.38
10020510--10020547	20	1.9	19	85	15	51	26	0	34	39	1.57
10024836--10024947	57	2.0	57	84	7	147	57	8	18	16	1.63
10025177--10025202	10	2.6	10	100	0	52	76	0	7	15	0.99
10025197--10025245	25	1.9	25	84	12	64	81	8	10	0	0.87
10025215--10025244	14	2.1	15	93	6	53	83	6	10	0	0.81
10026271--10026371	51	2.0	51	86	0	139	30	15	14	38	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10026183--10026439	137	1.9	137	80	5	304	29	16	14	38	1.88
10026452--10026496	16	2.7	17	89	6	74	22	17	4	55	1.60
10026538--10026670	69	1.9	69	81	3	160	30	18	9	41	1.82
10026630--10026827	86	2.3	86	80	0	207	32	20	10	36	1.86
10027004--10027417	119	3.5	118	80	4	359	20	22	14	42	1.87
10027659--10027693	3	11.7	3	87	0	52	28	2	0	68	1.04
10027656--10027694	9	4.3	9	86	0	51	25	2	0	71	0.98
10028177--10028259	31	2.6	31	86	1	112	25	1	22	50	1.56
10028562--10028598	19	1.9	19	88	0	56	18	2	2	75	1.04
10035163--10035196	17	2.0	17	94	0	59	2	29	26	41	1.70
10035254--10035318	32	2.0	32	88	5	96	53	27	3	15	1.56
10043850--10043888	19	2.1	19	100	0	78	56	10	12	20	1.65
10056422--10056943	245	2.2	234	82	6	593	51	4	11	32	1.60
10056935--10056977	19	2.2	20	84	12	54	72	6	11	9	1.29
10057402--10057475	34	2.2	34	87	0	103	37	13	12	36	1.82
10067698--10068160	122	3.8	119	80	8	475	44	6	11	38	1.66
10067698--10068153	62	7.4	61	73	12	304	44	6	11	37	1.66
10072474--10072525	27	1.9	27	92	0	86	26	13	15	44	1.84
10079057--10079111	28	2.0	28	82	7	67	50	7	0	41	1.30
10079590--10079646	28	2.0	28	83	6	71	50	5	0	43	1.24
10079900--10079934	18	1.9	18	88	0	52	34	0	2	62	1.10
10079967--10080025	20	2.8	20	75	17	57	49	1	0	49	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10080982--10081011	10	3.1	10	95	4	53	0	0	6	93	0.35
10089003--10089045	21	2.2	20	88	12	63	44	13	9	32	1.76
10097755--10097820	35	2.0	32	82	14	80	45	3	1	50	1.26
10097880--10097933	24	2.2	24	83	6	65	35	0	0	64	0.94
10097901--10097935	10	3.6	10	84	7	54	31	0	0	68	0.90
10098369--10098422	25	2.2	25	86	6	74	46	0	3	50	1.19
10098564--10098608	17	2.6	17	86	6	56	53	0	0	46	1.00
10105416--10105499	8	11.1	8	73	16	65	75	1	13	10	1.12
10107265--10107346	41	2.0	42	85	7	114	24	15	18	41	1.89
10107433--10107524	42	2.2	42	92	3	150	29	16	19	34	1.94

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106