genome.fa.s57.2.7.7.80.10.50.1000.80.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167882.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_15, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22478863

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   

This is table  80  of  106  ( 12717 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15915955--15916028	36	2.1	36	97	0	139	32	14	21	31	1.94
15917157--15917187	2	15.5	2	100	0	62	51	0	0	48	1.00
15923155--15923542	194	2.0	194	96	0	722	23	25	12	37	1.90
15924146--15924216	24	3.0	24	82	0	79	32	19	30	16	1.95
15924393--15924471	36	2.2	36	86	0	122	34	17	24	24	1.96
15929702--15929730	13	2.2	13	100	0	58	41	13	6	37	1.72
15935112--15935146	16	2.2	16	89	0	52	2	2	5	88	0.68
15945458--15945491	2	17.5	2	93	6	61	50	0	0	50	1.00
15945539--15945589	24	2.2	24	83	10	63	43	3	9	43	1.56
15945707--15945756	21	2.4	21	79	0	55	32	6	4	58	1.41
15950930--15951004	29	2.5	29	78	4	78	40	8	13	38	1.74
15960920--15960944	12	2.1	12	100	0	50	32	0	0	68	0.90
15961170--15961213	19	2.4	19	85	7	56	70	11	0	18	1.16
15964101--15964204	54	1.9	54	88	3	156	39	11	17	31	1.85
15964405--15964448	22	2.0	22	95	0	79	54	11	13	20	1.69
15966311--15966351	22	1.9	22	85	14	59	36	19	24	19	1.95
15968294--15968345	20	2.6	20	84	6	61	65	1	1	30	1.14
15970112--15970163	14	3.3	16	71	13	54	36	0	0	63	0.95
15970088--15970163	30	2.6	30	85	6	93	38	1	1	59	1.14
15970200--15970263	27	2.3	29	81	7	80	60	0	0	39	0.97
15977400--15977425	2	13.0	2	100	0	52	0	50	0	50	1.00
15982663--15982698	14	2.6	14	90	0	63	0	50	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15984939--15984963	2	12.5	2	100	0	50	52	0	0	48	1.00
15989300--15989333	17	2.1	17	89	10	54	58	2	0	38	1.13
15990110--15990140	10	3.2	10	90	9	55	32	0	0	67	0.91
15990168--15990212	19	2.3	19	88	3	63	80	0	11	8	0.92
15990518--15990578	24	2.5	24	76	5	61	62	6	1	29	1.30
16000252--16000425	90	1.9	90	94	0	303	24	29	26	19	1.98
16009284--16009330	24	2.0	24	83	8	60	38	4	10	46	1.58
16009537--16009583	20	2.5	19	86	10	62	38	0	6	55	1.26
16011183--16011215	3	11.0	3	100	0	66	66	0	0	33	0.92
16011425--16011481	26	2.2	25	78	9	62	57	10	1	29	1.42
16011947--16012005	28	2.0	29	83	6	75	52	0	1	45	1.10
16011973--16012007	16	2.1	17	89	5	54	62	0	0	37	0.95
16012890--16012945	28	1.9	30	85	7	80	28	3	8	58	1.45
16012902--16012961	30	2.0	29	87	3	84	30	1	6	61	1.31
16012937--16012970	17	2.1	17	88	5	52	44	5	2	47	1.42
16013763--16013840	21	3.7	21	77	13	70	64	3	3	28	1.29
16024904--16024944	2	20.5	2	100	0	82	51	0	48	0	1.00
16036614--16036643	2	15.0	2	100	0	60	50	0	0	50	1.00
16041399--16042501	550	2.0	550	100	0	2206	33	17	17	31	1.94
16047412--16047441	2	15.0	2	100	0	60	50	0	0	50	1.00
16048371--16048402	2	16.0	2	93	0	55	50	3	0	46	1.17
16052940--16053035	44	2.2	43	83	5	122	38	19	9	32	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16068978--16069017	21	1.9	21	85	10	55	35	5	7	52	1.51
16069591--16069627	17	2.2	17	90	4	58	18	5	0	75	0.99
16071701--16071738	8	4.8	8	84	9	51	21	0	2	76	0.91
16071906--16071930	13	1.9	13	100	0	50	12	0	0	88	0.53
16071940--16071972	17	1.9	17	100	0	66	75	6	0	18	1.00
16072433--16072494	31	2.0	31	87	3	90	48	19	9	22	1.78
16073194--16073590	83	4.7	84	83	6	446	47	14	13	23	1.80
16073163--16073590	168	2.5	165	83	6	493	46	15	13	24	1.82
16073194--16073590	43	9.4	42	83	7	430	47	14	13	23	1.80
16073727--16073773	15	3.1	15	77	14	51	38	6	10	44	1.65
16073816--16073958	43	3.2	43	75	11	126	34	18	13	33	1.90
16074172--16074222	22	2.3	22	89	0	75	39	17	3	39	1.68
16075454--16075495	9	4.6	9	82	5	57	9	4	0	85	0.72
16075445--16075502	27	2.1	29	90	9	95	8	10	0	81	0.89
16075454--16075502	19	2.7	19	87	6	66	8	6	0	85	0.73
16075454--16075502	9	5.4	9	78	9	55	8	6	0	85	0.73
16077716--16077772	27	2.1	27	96	0	105	49	15	7	28	1.71
16078448--16078507	23	2.6	23	89	2	84	46	5	21	26	1.72
16079977--16080016	8	4.8	9	79	14	50	20	0	2	77	0.88
16080108--16080167	25	2.4	24	83	8	66	36	6	5	51	1.50
16080215--16080264	21	2.4	21	90	3	75	78	8	0	14	0.97
16080667--16080693	12	2.2	12	100	0	54	48	25	7	18	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16086553--16086596	22	2.0	22	90	0	70	38	4	2	54	1.33
16096313--16096456	59	2.4	59	88	4	209	36	11	4	47	1.60
16096468--16096500	14	2.3	15	94	5	59	36	0	3	60	1.12
16096365--16096600	130	1.8	130	86	5	345	37	11	5	45	1.62
16096365--16096620	127	2.0	122	81	10	291	38	10	5	46	1.61
16096601--16096727	57	2.2	59	87	8	181	38	8	3	49	1.49
16096736--16096774	9	3.8	10	83	16	53	69	0	0	30	0.89
16096823--16096848	12	2.2	12	100	0	52	69	23	0	7	1.14
16096820--16096854	15	2.3	15	95	0	61	68	20	0	11	1.20
16096872--16096902	4	7.8	4	92	0	53	74	0	3	22	0.96
16097824--16098058	89	2.7	86	79	9	249	44	17	11	25	1.83
16097856--16098048	44	4.3	44	85	7	237	46	15	11	26	1.81
16098891--16098938	21	2.2	23	88	7	73	8	6	0	85	0.74
16098897--16098940	14	3.4	13	81	9	54	6	4	0	88	0.62
16100498--16100733	58	4.0	58	81	9	248	36	12	5	45	1.66
16100504--16100702	58	3.3	59	85	4	256	35	11	5	47	1.63
16100715--16100747	14	2.3	15	94	5	59	30	0	6	63	1.18
16100739--16100854	61	1.9	61	84	7	155	31	12	5	50	1.61
16100810--16100901	48	2.0	46	85	8	123	36	13	7	42	1.72
16100863--16100974	58	1.9	59	89	7	174	37	10	3	48	1.56
16100947--16100987	15	2.6	16	81	14	50	41	0	7	51	1.30
16101841--16101873	17	1.9	17	93	0	57	15	3	0	81	0.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16101839--16101875	9	4.4	8	90	10	56	16	2	0	81	0.81
16107291--16107397	52	2.1	51	81	10	119	41	1	1	55	1.22
16111937--16111982	24	1.9	24	95	0	83	21	8	15	54	1.68
16114081--16114129	3	16.7	3	83	12	66	73	0	0	26	0.83
16119133--16119157	3	8.3	3	100	0	50	32	32	36	0	1.58
16121754--16121779	2	13.0	2	100	0	52	50	0	50	0	1.00
16125129--16125207	26	3.0	26	94	0	140	29	27	11	31	1.91
16126876--16126916	18	2.2	19	91	4	66	29	0	2	68	1.03
16126930--16126997	33	2.1	33	83	5	84	54	2	0	42	1.15
16127216--16127244	2	14.5	2	100	0	58	51	0	0	48	1.00
16127884--16127960	32	2.4	33	78	8	86	41	2	1	54	1.22
16127942--16127999	20	2.9	20	77	22	68	37	1	0	60	1.07
16127948--16128022	20	4.0	18	77	17	64	36	1	0	62	1.04
16127937--16128013	20	4.1	20	75	18	67	37	1	0	61	1.05
16127986--16128019	16	2.1	16	94	0	59	29	0	0	70	0.87
16128148--16128223	11	6.5	11	71	14	62	53	2	1	42	1.23
16128082--16128163	23	3.6	23	68	15	71	45	1	1	52	1.16
16128088--16128218	46	2.8	47	81	8	124	48	2	1	47	1.23
16128187--16128223	12	3.1	12	88	0	56	59	0	0	40	0.97
16128255--16128326	36	2.0	36	94	0	126	22	38	6	31	1.81
16135562--16135588	7	3.9	7	100	0	54	29	14	11	44	1.80
16135562--16135596	14	2.6	14	90	4	54	31	14	11	42	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16136869--16136969	30	3.4	30	78	13	120	37	6	0	55	1.27
16141788--16141830	19	2.3	19	87	0	59	67	4	0	27	1.10
16141893--16141918	2	13.0	2	100	0	52	50	0	0	50	1.00
16146639--16146832	97	2.0	96	87	3	282	43	12	9	34	1.76
16147606--16147634	14	2.1	14	93	6	51	58	0	0	41	0.98
16149546--16149648	52	2.0	51	94	1	179	43	3	12	39	1.61
16149448--16149932	242	2.0	243	98	0	936	35	16	14	33	1.90
16149788--16149891	52	2.0	52	98	0	199	44	2	13	39	1.59
16160880--16160945	29	2.4	27	77	18	73	60	0	1	37	1.06
16164749--16164821	38	1.9	38	83	5	94	30	13	20	35	1.91

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106