genome.fa.s57.2.7.7.80.10.50.1000.12.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167882.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_15, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22478863

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   

This is table  12  of  106  ( 12717 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1914169--1914299	66	2.0	66	95	0	235	24	4	16	54	1.61
1914215--1914290	39	1.9	40	84	12	104	23	3	19	52	1.63
1915540--1915781	133	1.8	135	86	3	355	24	10	13	50	1.73
1917978--1918023	7	6.6	7	97	0	65	19	0	34	45	1.51
1917978--1918023	14	3.3	14	93	0	74	19	0	34	45	1.51
1920472--1920538	10	6.7	10	74	25	54	1	19	0	79	0.82
1920475--1920580	22	5.0	21	70	22	69	3	19	0	76	0.94
1920482--1920580	35	2.8	33	76	18	94	4	19	0	76	0.94
1920482--1920580	30	3.5	29	76	11	73	4	19	0	76	0.94
1921739--1921769	8	3.9	8	95	0	53	22	0	3	74	0.96
1921765--1921799	11	3.1	11	87	4	52	0	17	0	82	0.66
1921890--1922155	138	1.9	138	90	0	424	45	16	9	27	1.78
1925097--1925174	26	3.2	25	75	7	70	21	3	33	41	1.72
1925255--1925300	18	2.5	18	92	3	74	28	0	23	47	1.52
1926435--1926476	20	2.2	20	95	4	77	38	16	14	30	1.89
1926439--1926477	10	3.9	10	82	0	51	33	15	17	33	1.92
1935255--1935839	306	1.9	306	92	1	976	45	11	12	29	1.78
1940637--1940690	26	2.0	27	89	3	83	27	24	9	38	1.86
1940642--1940700	27	2.2	27	81	6	66	30	22	8	38	1.83
1941017--1941057	20	2.2	18	86	8	55	65	4	7	21	1.37
1941272--1941909	105	6.0	105	80	9	611	36	14	15	32	1.88
1941272--1941909	215	3.0	213	81	6	681	36	14	15	32	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1941811--1942053	126	1.9	127	80	2	283	34	13	16	35	1.88
1942218--1942261	15	2.9	15	79	3	52	84	13	2	0	0.73
1949721--1949936	106	2.0	110	86	8	307	41	15	12	31	1.83
1954172--1954275	22	4.7	22	75	18	99	49	10	6	33	1.64
1958867--1958918	22	2.4	22	80	6	61	40	9	7	42	1.66
1959360--1959453	22	4.3	22	81	0	107	46	5	8	39	1.57
1959349--1959509	44	3.7	44	77	3	144	47	5	8	38	1.58
1961753--1961818	20	3.6	20	71	23	63	21	4	24	50	1.67
1961748--1961812	34	1.9	34	90	0	103	21	3	27	47	1.65
1961847--1961898	13	3.9	13	89	2	68	19	7	19	53	1.68
1961971--1962007	3	12.0	3	88	5	56	35	0	2	62	1.10
1962854--1962909	7	8.6	7	84	9	66	21	1	1	75	0.99
1962842--1962906	32	2.1	31	91	8	105	16	4	3	75	1.10
1966537--1966607	34	2.1	34	100	0	142	40	5	16	36	1.73
1970184--1970334	75	2.0	75	93	0	257	21	24	21	32	1.98
1970380--1970426	23	2.0	23	100	0	94	23	29	17	29	1.97
1972230--1972270	20	2.2	19	83	12	50	46	4	0	48	1.23
1972372--1972433	34	1.9	30	87	12	88	61	0	1	37	1.06
1972371--1972424	17	3.2	17	72	12	58	61	0	1	37	1.07
1972395--1972433	20	2.0	20	89	0	60	64	0	0	35	0.94
1972513--1972586	28	2.8	26	80	10	80	47	1	2	48	1.24
1972512--1972586	25	2.8	28	78	13	79	46	1	2	49	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1972794--1972831	19	2.0	19	85	10	51	52	0	0	47	1.00
1973903--1973933	16	1.9	16	93	0	53	45	0	0	54	0.99
1973894--1973937	14	3.2	13	78	9	52	45	0	0	54	0.99
1974160--1974189	7	4.3	7	91	0	51	60	0	0	40	0.97
1976187--1976221	2	17.5	2	100	0	70	51	0	0	48	1.00
1988350--1988387	14	2.8	14	85	14	53	34	0	5	60	1.19
1995227--1995284	21	2.8	21	75	12	57	46	1	3	48	1.29
1995834--1995872	21	1.9	20	84	5	51	41	7	0	51	1.31
1995954--1995995	16	2.5	17	80	7	50	45	2	0	52	1.13
2000046--2000076	15	2.1	15	93	0	53	32	6	3	58	1.40
2003226--2003335	15	7.1	15	71	16	73	48	2	0	49	1.15
2003201--2003354	20	7.8	20	70	15	88	48	1	0	49	1.12
2003258--2003344	28	3.4	25	71	17	65	44	3	0	51	1.18
2007099--2007146	16	2.8	18	87	9	66	39	16	2	41	1.60
2007680--2007737	29	2.0	29	86	6	82	53	1	6	37	1.38
2012730--2012778	26	2.0	25	84	8	64	59	2	0	38	1.09
2016366--2016641	141	1.9	143	80	9	316	34	13	14	38	1.84
2018165--2018216	27	1.9	27	84	7	70	44	30	1	23	1.64
2018172--2018226	20	2.8	20	86	2	76	45	30	1	21	1.62
2018157--2018240	7	12.7	7	70	12	52	47	33	1	17	1.56
2019252--2019292	17	2.3	18	87	4	57	75	0	0	24	0.80
2019418--2019472	25	2.2	25	86	0	74	25	10	7	56	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2034897--2034960	17	3.6	17	74	14	58	76	0	9	14	1.01
2035968--2036102	44	3.1	46	80	15	144	26	14	17	41	1.88
2035967--2036294	41	8.0	41	83	8	316	25	16	17	40	1.90
2036528--2036572	3	14.7	3	82	13	56	26	0	0	73	0.84
2036522--2036572	20	2.5	20	81	12	68	25	0	0	74	0.82
2036528--2036572	14	3.4	13	82	11	56	26	0	0	73	0.84
2036503--2036605	37	2.7	37	81	11	120	22	1	1	73	1.03
2036504--2036601	6	15.7	6	77	17	67	21	2	2	74	1.02
2036504--2036600	17	5.5	17	69	21	67	21	2	2	74	1.03
2037613--2037643	8	3.8	8	91	8	53	77	0	0	22	0.77
2037612--2037642	9	3.6	9	91	8	55	80	0	0	19	0.71
2040059--2040085	3	9.0	3	100	0	54	33	0	0	66	0.92
2041741--2041765	6	4.2	6	100	0	50	64	0	0	36	0.94
2042053--2042088	14	2.4	16	86	13	58	72	0	5	22	1.05
2042054--2042086	15	2.3	15	94	5	59	72	0	6	21	1.05
2043377--2043434	26	2.3	26	81	3	64	68	8	3	18	1.30
2053516--2053558	17	2.6	17	78	17	54	30	2	2	65	1.18
2053534--2053574	21	2.0	21	85	9	57	31	0	2	65	1.05
2053545--2053570	13	2.0	13	100	0	52	38	0	0	61	0.96
2057898--2057963	28	2.3	29	80	12	82	21	1	7	69	1.21
2057942--2057968	14	1.9	14	100	0	54	22	0	3	74	0.98
2059715--2059745	10	3.1	10	95	0	53	29	16	25	29	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2061814--2061849	16	2.3	15	90	4	54	75	0	0	25	0.81
2065967--2066182	119	1.8	120	89	5	348	36	12	6	44	1.68
2065967--2066196	60	3.9	59	88	5	333	35	12	6	46	1.67
2066199--2066448	6	38.5	6	71	18	103	74	2	2	20	1.05
2066196--2066386	22	8.8	22	72	15	123	75	1	3	19	0.99
2066283--2066457	4	43.8	4	71	24	81	73	2	1	22	1.04
2066200--2066408	86	2.5	86	78	16	213	75	0	3	20	1.00
2066209--2066456	40	6.1	39	67	24	99	73	2	2	21	1.06
2066199--2066408	108	1.9	108	82	9	259	75	0	3	20	1.00
2066199--2066464	108	2.5	107	78	16	241	74	1	3	20	1.05
2066701--2066749	18	2.5	19	83	16	64	0	46	0	53	1.00
2066704--2066745	17	2.4	17	88	4	57	0	45	0	54	0.99
2067311--2067417	24	4.7	22	72	18	76	69	0	5	24	1.16
2067320--2067384	29	2.2	28	77	17	71	67	0	7	24	1.16
2067353--2067456	3	33.3	3	71	18	54	68	0	3	27	1.07
2067316--2067424	52	2.2	50	76	15	120	69	0	5	24	1.09
2067286--2067419	17	8.4	16	69	22	70	68	0	5	24	1.17
2067649--2067678	9	3.2	9	95	4	51	0	0	13	86	0.57
2067652--2067681	14	2.1	14	93	0	51	0	0	16	83	0.65
2067712--2067824	44	2.5	44	85	7	140	42	14	15	28	1.85
2067792--2068125	42	8.1	41	81	8	295	37	19	16	26	1.93
2067768--2068125	83	4.3	82	79	10	316	37	19	15	27	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2067810--2068125	125	2.6	123	78	11	349	37	19	15	27	1.92
2069851--2069915	33	1.9	33	81	3	76	9	16	0	73	1.07
2072239--2072275	15	2.5	15	100	0	74	37	21	32	8	1.83
2073729--2073946	58	3.7	59	82	3	237	35	12	7	44	1.71
2073959--2074172	5	41.8	5	75	12	104	74	1	2	21	1.00
2074047--2074166	3	43.0	3	74	17	91	73	0	1	24	0.98
2073959--2074168	100	2.1	100	87	9	320	74	1	2	21	1.01
2073961--2074166	6	36.3	6	77	15	95	73	1	2	22	1.03
2073959--2074130	6	28.5	6	75	17	108	75	1	2	20	0.98
2075046--2075165	20	5.7	20	67	24	61	70	1	6	21	1.20

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106