genome.fa.s57.2.7.7.80.10.50.1000.87.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167882.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_15, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22478863

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   

This is table  87  of  106  ( 12717 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17575086--17575220	67	2.0	67	98	0	261	49	15	13	21	1.78
17575444--17575468	6	4.2	6	100	0	50	48	36	16	0	1.46
17586846--17586887	2	21.0	2	100	0	84	50	0	0	50	1.00
17592636--17592681	9	5.1	9	85	15	60	43	2	0	54	1.12
17593041--17593083	14	2.8	16	79	17	54	37	9	0	53	1.33
17598492--17598569	24	3.3	24	82	8	88	37	0	0	62	0.95
17598502--17598562	12	5.2	12	79	16	65	36	0	0	63	0.94
17598493--17598562	12	5.9	13	82	15	64	35	0	0	64	0.94
17598777--17598893	9	13.7	9	66	16	54	52	0	0	46	1.06
17598777--17598842	26	2.6	25	88	7	105	51	0	1	46	1.10
17598785--17598888	16	6.6	16	68	23	60	51	0	0	47	1.07
17598811--17598850	15	2.6	16	84	4	55	52	0	2	45	1.14
17598818--17598887	36	1.9	37	85	8	99	52	0	1	45	1.09
17598815--17598932	52	2.3	49	83	9	141	54	0	1	44	1.10
17598925--17599136	15	13.7	15	66	19	80	41	1	1	55	1.19
17598936--17599142	18	11.0	18	69	22	108	42	1	1	53	1.20
17599009--17599066	23	2.5	23	88	0	89	46	0	1	51	1.11
17598936--17599136	23	9.5	22	72	18	78	41	1	1	54	1.20
17598995--17599136	30	4.6	30	72	20	98	42	0	1	55	1.13
17599244--17599304	22	2.9	22	76	9	65	42	4	0	52	1.23
17608068--17608115	14	3.4	14	79	2	51	56	0	43	0	0.99
17608296--17608324	2	14.5	2	100	0	58	0	48	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17621024--17621050	2	13.5	2	100	0	54	0	0	48	51	1.00
17626485--17626514	13	2.3	13	94	0	51	40	3	6	50	1.45
17628672--17628735	7	9.1	7	94	0	65	28	51	1	18	1.55
17628674--17628742	21	3.3	21	91	0	102	26	53	2	17	1.57
17628683--17628742	7	8.6	7	96	0	102	26	55	1	16	1.51
17628911--17628945	2	17.0	2	94	5	61	48	0	2	48	1.16
17630209--17630235	2	13.5	2	100	0	54	51	0	0	48	1.00
17655511--17655551	6	7.0	6	86	5	57	0	2	12	85	0.70
17670334--17670375	17	2.4	18	76	15	52	66	0	26	7	1.17
17670484--17670518	15	2.3	15	90	0	52	17	0	62	20	1.32
17670451--17670525	35	2.1	34	81	13	82	13	1	61	24	1.40
17671012--17671061	25	2.1	23	88	7	73	46	0	8	46	1.32
17671391--17671448	25	2.3	24	73	23	57	44	1	12	41	1.51
17674831--17674901	18	3.9	18	83	7	81	32	33	5	28	1.80
17682353--17682385	2	16.5	2	100	0	66	48	0	0	51	1.00
17682637--17682670	2	17.0	2	100	0	68	50	0	0	50	1.00
17688417--17688442	2	13.0	2	100	0	52	50	0	0	50	1.00
17691921--17691976	27	2.2	26	83	6	69	55	5	3	35	1.40
17692365--17692391	4	6.8	4	100	0	54	74	0	0	25	0.83
17693805--17693839	18	1.9	18	88	0	52	34	0	0	65	0.93
17699248--17699278	2	15.5	2	100	0	62	0	48	0	51	1.00
17699777--17699804	2	14.0	2	100	0	56	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17706015--17706051	16	2.2	18	90	9	60	62	0	0	37	0.96
17706016--17706053	19	2.0	19	85	10	51	60	0	0	39	0.97
17706154--17706194	11	3.7	11	83	0	55	53	0	0	46	1.00
17707390--17707422	17	1.9	17	100	0	66	54	0	0	45	0.99
17712537--17712583	23	2.1	23	88	4	69	55	0	6	38	1.26
17712788--17712933	75	2.0	75	89	4	224	28	23	15	32	1.95
17724270--17724303	12	2.8	12	90	0	50	32	2	26	38	1.71
17729640--17729687	3	16.0	3	100	0	96	33	0	0	66	0.92
17733177--17733219	7	6.0	7	81	13	52	27	4	2	65	1.25
17733275--17733388	25	4.9	24	76	19	109	27	4	4	64	1.32
17733286--17733435	22	6.8	20	71	19	79	26	4	2	66	1.25
17733286--17733431	45	3.2	43	79	13	136	26	4	2	65	1.26
17733337--17733437	44	2.3	43	83	11	116	24	4	1	68	1.20
17733604--17733648	19	2.4	18	85	10	63	8	6	2	82	0.93
17733753--17734037	121	2.4	116	83	12	326	43	5	11	38	1.66
17733752--17734037	58	4.8	56	77	13	268	43	5	11	38	1.66
17737037--17737091	21	2.6	21	75	8	58	20	3	12	63	1.43
17737907--17737963	9	6.4	8	77	18	51	82	0	14	3	0.80
17737907--17737963	17	3.2	17	77	18	62	82	0	14	3	0.80
17737909--17737961	20	2.8	19	83	10	65	84	0	11	3	0.73
17737907--17737963	29	2.0	28	86	10	80	82	0	14	3	0.80
17739285--17739366	43	1.9	42	85	7	112	40	9	13	36	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17739660--17740020	42	8.6	42	84	3	390	25	14	19	39	1.90
17739660--17740018	125	2.9	125	87	2	497	25	14	19	39	1.90
17739660--17740140	42	11.5	41	79	8	341	25	15	19	39	1.90
17739685--17740098	167	2.5	166	81	8	477	25	14	19	39	1.90
17739689--17740020	83	4.0	82	84	7	382	25	15	20	39	1.91
17739689--17740099	125	3.3	124	79	9	406	25	15	19	39	1.90
17740172--17740200	14	2.1	14	100	0	58	79	6	0	13	0.93
17740213--17740365	43	3.5	44	90	4	229	20	15	22	41	1.90
17740577--17740619	7	6.0	7	81	13	52	27	4	2	65	1.25
17740633--17740673	10	4.2	10	90	3	66	0	9	0	90	0.46
17740631--17740664	17	1.9	18	94	5	61	0	11	0	88	0.52
17740681--17740853	4	43.8	4	67	16	53	26	4	2	66	1.23
17740681--17740853	24	7.3	25	70	21	106	26	4	2	66	1.23
17740763--17740848	21	4.0	20	76	18	75	24	4	1	69	1.14
17740747--17740864	46	2.5	47	84	12	136	22	5	2	69	1.20
17741738--17741862	16	7.2	16	67	20	56	20	4	3	72	1.14
17741819--17741873	15	3.6	14	81	15	65	18	3	0	78	0.90
17741902--17742178	61	4.5	61	78	8	303	42	5	12	39	1.66
17745131--17745321	93	2.1	93	90	2	303	38	9	7	43	1.66
17745131--17745270	44	3.1	44	64	13	111	40	8	7	43	1.64
17745352--17745389	18	2.1	18	85	9	51	31	0	5	63	1.17
17745874--17745929	27	2.1	28	83	6	71	37	7	7	48	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17746233--17746260	7	4.0	7	100	0	56	85	0	0	14	0.59
17752192--17752260	30	2.3	30	92	0	111	24	21	28	24	1.99
17759515--17759555	19	2.2	19	82	4	57	68	0	0	31	0.90
17759565--17759603	18	2.1	19	85	4	53	43	0	2	53	1.14
17759778--17759859	43	1.9	43	94	0	146	31	15	15	36	1.90
17760844--17760884	21	2.0	21	85	9	57	48	9	4	36	1.58
17775929--17775975	20	2.3	20	96	0	85	48	14	29	6	1.69
17790092--17790139	20	2.3	20	82	7	60	41	0	16	41	1.48
17796432--17796477	19	2.4	20	85	10	69	63	0	0	36	0.95
17800150--17800199	23	2.2	22	82	3	55	20	4	12	64	1.43
17801229--17801288	28	2.2	28	96	3	113	20	8	6	65	1.43
17810085--17810127	21	2.0	22	90	4	70	44	11	9	34	1.73
17816122--17816162	22	1.9	21	90	5	64	58	0	0	41	0.98
17817321--17817368	25	1.9	25	86	0	69	25	2	2	70	1.09
17817338--17817388	19	2.7	19	81	3	59	27	3	3	64	1.28
17817600--17817641	20	2.1	20	86	0	57	54	16	28	0	1.42
17825425--17825494	34	2.1	34	86	0	95	50	4	4	41	1.42
17825427--17825495	18	3.9	18	81	7	70	47	4	4	43	1.42
17828674--17828769	46	2.1	46	92	0	156	34	15	13	36	1.87
17837766--17837968	102	2.0	99	89	3	309	32	5	12	49	1.63
17847596--17847624	15	1.9	15	100	0	58	20	13	17	48	1.81
17850170--17850205	14	2.4	16	90	9	58	55	0	2	41	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17856383--17856441	29	2.0	29	100	0	118	33	6	27	32	1.83
17865425--17865489	31	2.1	31	97	0	121	32	21	3	43	1.68
17866164--17866188	2	12.5	2	100	0	50	48	0	0	52	1.00
17874779--17874809	15	2.1	15	100	0	62	54	12	12	19	1.70
17876243--17876274	15	2.1	16	94	5	57	71	0	0	28	0.86
17876316--17876384	33	2.1	33	86	0	93	53	1	0	44	1.09
17878560--17878585	2	13.0	2	100	0	52	50	0	0	50	1.00
17885563--17885622	31	1.9	31	89	3	93	51	0	3	45	1.17
17885563--17885622	32	1.9	32	89	3	95	51	0	3	45	1.17
17885702--17885751	16	3.3	16	72	16	52	24	6	2	68	1.23

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106