genome.fa.s57.2.7.7.80.10.50.1000.77.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167882.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_15, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22478863

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   

This is table  77  of  106  ( 12717 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14963959--14964016	18	3.2	18	76	11	57	31	5	1	62	1.27
14977085--14977123	14	2.9	13	81	7	51	41	2	0	56	1.13
14985714--14985741	14	2.0	14	100	0	56	14	28	7	50	1.69
14992369--14992408	21	1.9	21	84	0	53	27	5	0	67	1.11
14992798--14992840	18	2.4	18	76	0	50	58	0	0	41	0.98
14993485--14993528	16	2.8	16	86	6	54	65	0	0	34	0.93
14993488--14993542	28	2.0	26	86	6	74	61	0	0	38	0.96
14993502--14993535	16	2.1	16	94	0	59	61	0	0	38	0.96
14995820--14995859	13	3.2	12	86	10	53	7	2	10	80	1.00
14996480--14996519	15	2.5	16	88	8	55	22	0	5	72	1.04
14997200--14997303	47	2.3	47	90	6	160	33	1	9	54	1.44
14997347--14997398	20	2.4	23	81	15	67	36	5	3	53	1.43
14997250--14997520	141	1.9	137	81	12	322	32	2	8	56	1.45
14997330--14997420	32	2.9	31	85	8	105	34	5	6	53	1.50
14997386--14997430	20	2.2	20	88	0	63	33	4	8	53	1.52
14997392--14997560	44	3.9	41	75	16	139	31	2	10	55	1.46
14997489--14997550	24	2.6	24	85	7	81	33	3	9	53	1.50
14997482--14997520	19	2.1	19	85	0	51	30	5	10	53	1.56
14997661--14997748	17	4.7	19	73	13	67	30	4	12	52	1.59
14997771--14997816	25	1.9	24	82	8	58	26	8	19	45	1.79
15003589--15003616	2	14.0	2	100	0	56	50	0	0	50	1.00
15004942--15004966	11	2.3	11	100	0	50	32	0	28	40	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15004987--15005142	52	3.0	51	79	6	172	44	7	19	28	1.77
15005696--15005745	25	2.0	25	84	7	66	38	8	30	24	1.84
15006033--15006183	52	2.9	51	78	5	153	47	5	17	28	1.71
15006737--15006823	25	3.5	26	81	6	90	35	5	34	24	1.79
15007129--15007230	52	1.9	53	86	2	143	41	5	21	31	1.77
15007819--15007887	25	2.8	24	82	8	84	34	4	34	26	1.76
15007807--15007914	50	2.2	48	77	11	112	37	5	31	25	1.79
15008203--15008307	52	2.0	51	81	5	122	41	8	23	25	1.83
15011743--15012000	136	1.9	136	90	1	410	26	26	14	32	1.94
15015888--15015937	17	2.9	16	77	16	55	52	2	2	44	1.24
15015981--15016006	11	2.4	11	100	0	52	26	0	0	73	0.84
15016035--15016084	20	2.5	20	80	6	57	56	4	0	40	1.18
15018690--15018736	16	2.9	16	76	14	51	46	0	0	53	1.00
15023902--15023954	27	1.9	27	84	3	70	39	0	0	60	0.97
15025713--15025766	27	2.0	28	85	3	74	48	0	5	46	1.25
15026271--15026312	16	2.4	18	88	7	61	0	23	2	73	0.94
15029290--15029391	25	4.5	24	67	16	65	50	1	0	47	1.19
15029326--15029382	13	4.5	12	76	8	51	52	3	1	42	1.28
15054399--15054431	17	1.9	17	93	0	57	63	0	6	30	1.18
15055281--15055332	23	2.2	24	83	10	63	26	1	3	67	1.18
15055812--15055855	22	2.1	22	87	8	65	38	0	4	56	1.20
15055932--15056003	30	2.4	30	76	2	74	56	2	0	40	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15056336--15056376	20	2.1	19	86	4	55	58	0	2	39	1.11
15065264--15065321	30	1.9	30	82	6	73	48	1	3	46	1.29
15066610--15066671	31	2.0	31	96	0	115	37	11	6	45	1.66
15068933--15068968	2	18.0	2	100	0	72	50	0	0	50	1.00
15069364--15069427	33	1.9	33	93	0	110	31	6	25	37	1.81
15073769--15073794	2	13.0	2	100	0	52	50	0	0	50	1.00
15074730--15074804	13	5.9	13	71	12	57	45	0	0	54	0.99
15074720--15074814	42	2.1	47	83	14	123	44	1	0	54	1.07
15076431--15076458	13	2.2	13	100	0	56	21	21	32	25	1.98
15077090--15077120	11	2.8	11	90	0	53	54	6	12	25	1.62
15080935--15080964	5	6.0	5	100	0	60	40	0	20	40	1.52
15082069--15082197	63	2.0	64	89	1	197	26	6	14	52	1.65
15082280--15082341	26	2.6	23	75	12	70	53	14	6	25	1.65
15087558--15087584	2	13.5	2	100	0	54	48	0	0	51	1.00
15088805--15088872	25	2.9	21	85	14	73	54	1	0	44	1.09
15088805--15088859	22	2.6	21	86	13	69	54	1	0	43	1.10
15089134--15089175	22	1.9	22	95	0	75	40	7	0	52	1.29
15101442--15101466	2	12.5	2	100	0	50	52	0	0	48	1.00
15101740--15101816	29	2.5	32	85	8	106	42	0	5	51	1.24
15101923--15101967	21	2.0	22	83	12	56	57	4	2	35	1.31
15108044--15108083	5	8.0	5	94	0	71	0	22	0	77	0.77
15109745--15109832	30	2.9	30	82	1	95	53	1	9	36	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15110650--15110674	2	12.5	2	100	0	50	52	0	0	48	1.00
15111242--15111274	16	2.0	17	88	5	50	21	0	3	75	0.93
15112032--15112081	26	1.9	26	88	8	75	50	2	4	44	1.32
15112777--15112808	2	16.5	2	93	6	57	50	0	0	50	1.00
15111624--15113401	591	3.0	593	91	2	2770	43	7	5	43	1.55
15113373--15113405	2	17.0	2	93	6	59	51	0	0	48	1.00
15121668--15121703	18	1.9	19	88	5	56	38	2	0	58	1.13
15122071--15122110	17	2.4	17	86	0	62	52	7	2	37	1.43
15122123--15122162	15	2.7	15	88	0	62	57	5	2	35	1.34
15122039--15122267	112	2.0	112	99	0	449	49	10	3	35	1.56
15122183--15122222	17	2.4	17	86	0	62	52	7	2	37	1.43
15122235--15122267	15	2.2	15	100	0	66	60	6	0	33	1.21
15123499--15123525	2	13.5	2	100	0	54	48	0	0	51	1.00
15125177--15125211	18	1.9	18	88	0	52	62	2	0	34	1.10
15133053--15133117	24	2.7	23	79	6	76	41	0	1	56	1.08
15137569--15137613	22	2.0	24	86	8	67	44	2	0	53	1.13
15138346--15138393	12	4.0	12	81	8	53	45	0	0	54	0.99
15138394--15138440	23	2.0	25	87	8	71	53	2	0	44	1.12
15141912--15142040	66	2.0	66	93	0	222	27	21	17	33	1.96
15144537--15144599	31	2.0	31	90	0	99	41	4	15	38	1.69
15145682--15145724	19	2.3	19	84	8	52	37	0	0	62	0.95
15145696--15145724	10	3.0	10	95	5	51	37	0	0	62	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15146665--15146739	31	2.5	31	82	4	82	68	1	0	30	0.98
15146697--15146744	25	1.9	26	91	8	82	68	0	0	31	0.90
15147128--15147246	24	5.1	24	70	23	67	34	0	5	58	1.28
15147266--15147300	14	2.7	13	87	12	54	37	0	0	62	0.95
15152448--15152502	27	2.1	26	83	10	67	32	7	1	58	1.36
15164887--15164928	9	4.6	9	77	16	50	85	4	7	2	0.80
15164886--15164922	19	1.9	20	94	5	67	86	5	5	2	0.78
15164885--15164928	19	2.3	19	84	4	61	86	4	6	2	0.77
15166603--15166647	20	2.2	20	88	7	65	66	0	0	33	0.92
15166601--15166647	10	4.7	10	76	10	51	63	0	0	36	0.94
15174113--15174161	11	4.3	11	82	10	53	28	2	2	67	1.13
15178320--15178350	2	15.5	2	100	0	62	48	0	0	51	1.00
15184693--15184744	15	3.5	15	80	17	56	46	1	0	51	1.12
15184693--15184729	15	2.3	16	86	13	58	51	2	0	45	1.15
15185642--15185692	14	3.5	15	75	21	54	52	0	1	45	1.12
15186665--15186709	3	15.0	3	85	0	54	8	28	33	28	1.87
15186678--15186715	9	4.2	9	89	0	58	10	21	34	34	1.87
15188877--15188904	14	2.0	14	100	0	56	50	14	7	28	1.69
15190957--15190990	16	2.1	16	88	5	50	26	0	0	73	0.83
15191699--15191743	19	2.4	18	82	7	63	64	0	0	35	0.94
15191969--15192010	20	2.0	21	86	4	59	38	0	0	61	0.96
15193333--15193376	23	2.0	23	86	8	65	47	4	0	47	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15199211--15199244	6	5.7	6	96	0	50	58	0	0	41	0.98
15204940--15204979	19	2.1	19	100	0	80	37	22	15	25	1.93
15204945--15204988	19	2.3	19	84	0	52	40	18	18	22	1.91
15205228--15205260	2	17.0	2	93	6	59	51	0	0	48	1.00
15207121--15207147	5	5.4	5	100	0	54	40	0	0	59	0.98
15210257--15210296	19	2.2	19	86	4	55	57	2	0	40	1.12
15211175--15211231	10	5.3	11	74	17	57	54	1	0	43	1.10
15214278--15214302	2	12.5	2	100	0	50	0	0	48	52	1.00
15219065--15219106	6	6.7	6	80	20	50	0	2	66	30	1.04
15219065--15219117	26	2.0	27	88	3	81	0	5	66	28	1.15

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106