genome.fa.s57.2.7.7.80.10.50.1000.91.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167882.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_15, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22478863

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   

This is table  91  of  106  ( 12717 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18853394--18853434	21	2.0	21	90	0	64	46	9	0	43	1.36
18853513--18853551	20	2.0	20	94	0	69	51	20	2	25	1.60
18856347--18856384	2	19.0	2	88	0	58	50	0	5	44	1.24
18858114--18858138	7	3.6	7	100	0	50	56	0	16	28	1.41
18864879--18864925	19	2.6	17	83	12	58	31	2	0	65	1.04
18865174--18865227	19	2.8	18	88	5	63	57	0	0	42	0.98
18865180--18865227	19	2.5	20	89	6	64	60	0	0	39	0.97
18865191--18865236	19	2.4	19	96	0	83	54	0	2	43	1.12
18865233--18865279	21	2.2	21	88	7	69	31	0	0	68	0.90
18865239--18865306	21	3.0	22	80	19	70	38	0	1	60	1.06
18865334--18865374	21	2.0	22	85	9	59	53	0	0	46	1.00
18867670--18867715	23	2.0	22	84	12	58	30	0	4	65	1.12
18871731--18872528	411	1.9	411	96	0	1479	24	26	18	30	1.98
18876151--18876205	20	2.6	21	77	8	58	58	12	7	21	1.59
18876196--18876236	21	2.0	21	90	0	64	46	9	0	43	1.36
18883775--18883860	39	2.2	38	85	2	109	20	8	8	62	1.48
18884809--18885605	411	1.9	411	97	0	1495	24	26	18	30	1.98
18900289--18900359	4	17.8	4	94	0	61	29	0	19	50	1.48
18900313--18900339	2	13.5	2	100	0	54	48	0	0	51	1.00
18907420--18907462	10	4.4	10	91	2	70	11	44	16	27	1.82
18912683--18912721	20	2.0	20	100	0	78	17	41	15	25	1.89
18914460--18914502	18	2.4	18	88	7	61	51	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18941546--18941637	47	1.9	48	84	2	123	46	1	1	51	1.15
18941546--18941628	25	3.4	25	72	11	73	45	1	0	53	1.08
18941646--18941694	21	2.3	22	86	10	66	65	0	2	32	1.04
18941634--18941694	21	3.0	20	81	13	63	67	0	1	31	1.01
18941835--18941865	16	1.9	16	93	0	53	45	0	0	54	0.99
18947301--18947647	173	2.0	173	95	0	631	39	20	16	23	1.92
18954060--18954106	25	1.9	25	86	4	69	31	0	2	65	1.04
18954099--18954146	25	1.9	25	83	8	62	52	2	2	43	1.24
18960617--18960644	14	2.0	14	100	0	56	28	7	28	35	1.84
18960704--18960738	2	17.5	2	93	0	61	45	0	0	54	0.99
18968408--18968447	18	2.2	18	86	8	55	62	0	2	35	1.09
18992292--18992335	2	22.0	2	100	0	88	50	0	0	50	1.00
18998104--18998193	36	2.4	36	72	3	90	35	5	1	57	1.29
19007438--19007525	45	2.0	45	97	0	167	38	23	19	18	1.93
19012576--19012605	10	3.1	10	95	4	53	36	0	0	63	0.95
19012578--19012607	9	3.2	9	95	4	51	36	0	0	63	0.95
19013238--19013273	19	1.9	19	88	5	56	11	5	2	80	0.98
19029072--19029160	44	2.0	45	82	8	110	49	6	17	25	1.71
19034879--19034946	32	2.1	32	88	0	100	45	1	0	52	1.09
19034914--19034962	13	3.9	13	75	17	50	38	0	2	59	1.09
19035042--19035092	24	2.1	24	85	7	68	29	5	1	62	1.29
19039029--19039053	1	25.0	1	100	0	50	100	0	0	0	0.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19039188--19039299	34	3.3	34	79	13	115	48	5	5	41	1.49
19039410--19039508	34	2.9	33	80	5	108	44	6	2	47	1.39
19039422--19039510	34	2.6	34	87	0	124	46	4	1	48	1.30
19039513--19039537	10	2.5	10	100	0	50	64	0	8	28	1.22
19042043--19042160	44	2.7	43	85	6	148	44	11	12	31	1.77
19041925--19042190	85	3.1	85	78	9	245	45	12	11	30	1.78
19041925--19042185	43	6.0	43	78	9	212	44	12	11	31	1.79
19042510--19042576	34	1.9	34	81	3	80	41	8	11	37	1.73
19042605--19042698	18	5.4	18	74	12	72	42	9	11	36	1.74
19042600--19042718	34	3.5	32	72	17	89	40	10	12	36	1.77
19043023--19043149	46	2.8	46	80	2	139	40	14	8	36	1.76
19043023--19043140	24	5.1	24	62	12	66	40	14	8	36	1.76
19044254--19044292	19	2.0	20	85	5	53	10	7	2	79	1.02
19047359--19047410	26	2.0	26	96	0	95	26	25	7	40	1.82
19049221--19049262	23	1.9	22	90	9	68	71	0	2	26	0.98
19051889--19051940	21	2.5	22	93	6	90	51	0	0	48	1.00
19052339--19052408	34	2.1	34	100	0	140	31	12	11	44	1.78
19061869--19061938	17	4.1	17	75	16	65	35	0	0	64	0.94
19061903--19061935	9	3.7	9	88	12	50	36	0	0	63	0.95
19061869--19061936	25	2.6	26	86	6	84	35	0	0	64	0.94
19061907--19061975	21	3.2	21	79	8	77	44	0	0	55	0.99
19061940--19061980	21	2.0	21	90	0	64	53	0	0	46	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19063317--19063346	1	30.0	1	100	0	60	0	0	0	100	0.00
19064740--19064823	27	3.1	27	100	0	168	30	14	7	47	1.71
19069430--19069466	14	2.4	16	82	13	51	48	0	21	29	1.50
19084517--19084570	2	27.0	2	90	0	81	51	3	0	44	1.19
19086692--19086778	45	1.9	45	85	0	120	28	11	18	41	1.85
19089040--19089085	22	2.1	22	83	0	56	56	4	0	39	1.19
19090600--19090672	22	3.3	22	75	17	71	49	0	0	50	1.00
19090586--19090663	40	1.9	41	81	2	95	44	0	1	53	1.08
19091286--19091352	34	2.0	34	85	11	93	43	14	11	29	1.82
19091742--19091930	91	2.1	91	94	0	333	33	12	13	40	1.82
19092183--19092360	64	2.8	61	81	11	205	37	11	14	35	1.83
19094684--19094778	34	2.8	34	77	0	100	42	14	11	31	1.82
19103730--19103804	29	2.6	29	83	12	84	46	0	0	53	1.00
19103736--19103839	24	4.3	24	70	24	60	50	0	0	49	1.07
19107760--19107798	13	3.0	13	80	0	51	41	0	0	58	0.98
19107835--19107878	20	2.3	19	84	7	61	63	0	2	34	1.07
19107959--19108012	25	2.3	25	84	9	69	59	0	0	40	0.98
19113413--19113448	18	2.0	18	100	0	72	38	11	5	44	1.63
19137416--19137442	8	3.4	8	100	0	54	29	0	22	48	1.51
19138456--19138519	30	2.1	30	86	11	87	48	4	4	42	1.45
19138711--19138744	17	2.1	17	88	5	52	44	0	5	50	1.26
19144776--19144843	33	2.1	33	81	10	77	54	0	1	44	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19146006--19146054	22	2.2	24	82	10	59	40	0	2	57	1.10
19154650--19154700	26	2.0	26	96	0	93	56	0	0	43	0.99
19156438--19156472	17	2.1	17	94	0	61	48	0	0	51	1.00
19158150--19158191	13	3.3	13	80	6	59	73	0	0	26	0.83
19158138--19158204	25	2.7	24	86	6	91	68	1	0	29	0.98
19158154--19158192	6	6.3	6	82	5	51	74	0	0	25	0.82
19163083--19163148	21	3.2	20	82	8	78	83	9	4	3	0.89
19163080--19163152	26	2.9	25	80	15	87	82	9	5	2	0.93
19164809--19165092	141	2.0	142	93	2	491	40	11	15	33	1.82
19168952--19169027	30	2.6	29	81	10	91	47	1	10	40	1.46
19188823--19188920	30	3.3	29	88	2	124	48	3	8	39	1.48
19189271--19189335	30	2.2	30	82	0	76	47	3	6	43	1.43
19189278--19189370	30	3.1	30	80	9	91	49	2	8	39	1.45
19190012--19190062	10	4.9	10	90	7	75	15	1	1	80	0.89
19192945--19193234	58	4.9	59	85	5	311	45	5	12	37	1.64
19193111--19193205	31	3.2	31	69	22	103	46	6	8	38	1.60
19199453--19199516	22	3.0	22	80	8	62	32	0	1	65	1.02
19199455--19199532	18	3.9	21	79	14	76	33	0	1	65	1.01
19203181--19203213	17	1.9	17	88	11	50	18	0	0	81	0.68
19204824--19204879	27	2.1	27	86	0	76	44	23	14	17	1.85
19207779--19207918	70	2.0	70	91	0	226	29	15	22	32	1.95
19213215--19213263	20	2.5	19	83	6	62	63	4	0	32	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19213235--19213282	11	4.2	11	77	17	53	62	6	0	31	1.20
19222652--19222707	28	2.0	28	82	6	69	53	0	3	42	1.18
19222702--19222744	23	1.9	22	85	4	59	41	0	4	53	1.21
19225506--19225536	16	1.9	16	93	0	53	29	12	0	58	1.35
19225917--19225974	30	2.0	29	83	10	73	43	0	3	53	1.17
19226730--19226773	21	2.1	21	82	0	52	54	0	9	36	1.32
19227801--19227847	22	2.2	21	88	7	69	36	2	6	55	1.37
19230336--19230500	84	2.0	83	84	5	217	15	6	14	63	1.48
19230994--19231024	16	1.9	16	93	0	53	67	0	9	22	1.19
19231584--19231664	37	2.2	37	84	10	103	54	1	1	43	1.16

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106